Rh6AG380600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0005989
Physical Location & Seq
Forward (+)
58011891 .. 58015541
3651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG380600.1

Sequence Viewer

Length: 570 bp
ATGGTTGTTGAAGTTCTCAGTCCACAAGATTGCCTTAAACACCCTTCAAGTGAAGGCCTCCTCTCGCTTCCGATGAAATACCACTCCCGAAACCCTAACCGGGCCACCCGTCCTCAGCCCGACCGCCGCAAGCCGCAGCGCAAGCCGGCCCGGCCTAACACCACCACCTCCTCCCCGGTCCAGAAGGCTCCAGTTCCCCAAGCCCTCCTCACCGGCCAGGTCAAAATCCTCAAGCGCGGCGAAGAGCTCCCGAAGCCGGAGGAGCTCCCAAAGCCGGCCCCATCATCCAAAGAGAATCGCTCACCTCAGAAACAGAACCAGAAAGTTCCAGATCTCGGATCTACAGTTCGTCTGGGTCCGAACCCGAAGAAGGTTCCCAAGCAGACCCGACTCGCTGACCCGTTTAACCCGGCTCTCGGGTTCTACGCCGGGTCGTCATCCTGTATAGCCTCCCCGCCTCCGAGCTCGCTTCCACTTCCGTCTTTCTTCGCAAAGAGGAACGCCGTGGTTTCGAACACCGATGAAGCCGCCAGCGAGTTACTGAAGCTTCTTCGACTTAATTTATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

189

Amino Acids

20.63

Weight (kDa)

10.32

Isoelectric Point (pI)

74.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 237
AciI CCGC 6 cut(s) 124, 127, 134, 237, 455, 528
AclWI GGATC 1 cut(s) 346
AcoI YGGCCR 1 cut(s) 214
AcuI CTGAAG 1 cut(s) 563
AfiI CCNNNNNNNGG 6 cut(s) 100, 256, 274, 335, 370, 416
AgsI TTSAA 2 cut(s) 11, 48
AjnI CCWGG 1 cut(s) 216
AloI GAACNNNNNNTCC 2 cut(s) 330, 362
AluBI AGCT 4 cut(s) 247, 265, 465, 547
AluI AGCT 4 cut(s) 247, 265, 465, 547
Alw21I GWGCWC 3 cut(s) 249, 267, 467
AlwI GGATC 1 cut(s) 346
Ama87I CYCGRG 1 cut(s) 416
AoxI GGCC 6 cut(s) 55, 102, 147, 152, 214, 276
ApeKI GCWGC 1 cut(s) 136
AspLEI GCGC 2 cut(s) 141, 237
AspS9I GGNCC 5 cut(s) 102, 148, 178, 277, 356
AsuC2I CCSGG 5 cut(s) 101, 151, 176, 410, 430
AsuHPI GGTGA 2 cut(s) 202, 294
AsuII TTCGAA 1 cut(s) 512
AvaI CYCGRG 1 cut(s) 416
AvaII GGWCC 2 cut(s) 178, 356
BanII GRGCYC 3 cut(s) 249, 267, 467
Bbv12I GWGCWC 3 cut(s) 249, 267, 467
BbvCI CCTCAGC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 148
BccI CCATC 1 cut(s) 289
BceAI ACGGC 1 cut(s) 488
BciT130I CCWGG 1 cut(s) 218
BcnI CCSGG 5 cut(s) 101, 151, 176, 410, 430
BfmI CTRYAG 1 cut(s) 342
BglI GCCNNNNNGGC 1 cut(s) 151
BglII AGATCT 1 cut(s) 331
BisI GCNGC 5 cut(s) 127, 134, 137, 238, 528
BlsI GCNGC 5 cut(s) 128, 135, 138, 239, 529
Bme1390I CCNGG 6 cut(s) 101, 151, 176, 218, 410, 430
Bme18I GGWCC 2 cut(s) 178, 356
BmeT110I CYCGRG 1 cut(s) 416
BmgT120I GGNCC 5 cut(s) 102, 148, 178, 277, 356
BmiI GGNNCC 4 cut(s) 189, 279, 357, 375
BmrFI CCNGG 6 cut(s) 101, 151, 176, 218, 410, 430
BplI GAGNNNNNCTC 2 cut(s) 284, 316
BpmI CTGGAG 1 cut(s) 174
Bpu10I CCTNAGC 1 cut(s) 114
Bpu14I TTCGAA 1 cut(s) 512
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 5 cut(s) 101, 151, 176, 410, 430
BsaJI CCNNGG 2 cut(s) 174, 504
Bsc4I CCNNNNNNNGG 6 cut(s) 100, 256, 274, 335, 370, 416
Bse118I RCCGGY 3 cut(s) 145, 212, 274
Bse1I ACTGG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 2 cut(s) 174, 504
BseGI GGATG 2 cut(s) 284, 437
BseLI CCNNNNNNNGG 6 cut(s) 100, 256, 274, 335, 370, 416
BseMII CTCAG 3 cut(s) 31, 128, 320
BseNI ACTGG 1 cut(s) 191
BseRI GAGGAG 4 cut(s) 50, 160, 197, 275
BseXI GCAGC 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 237
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 6 cut(s) 57, 104, 149, 154, 216, 278
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 3 cut(s) 249, 267, 467
BsiHKCI CYCGRG 1 cut(s) 416
BsiSI CCGG 9 cut(s) 100, 146, 151, 176, 213, 257, 275, 410, 429
BslI CCNNNNNNNGG 6 cut(s) 100, 256, 274, 335, 370, 416
BsnI GGCC 6 cut(s) 57, 104, 149, 154, 216, 278
BsoBI CYCGRG 1 cut(s) 416
Bsp119I TTCGAA 1 cut(s) 512
Bsp1286I GDGCHC 3 cut(s) 249, 267, 467
Bsp143I GATC 2 cut(s) 331, 338
BspACI CCGC 6 cut(s) 124, 127, 134, 237, 455, 528
BspANI GGCC 6 cut(s) 57, 104, 149, 154, 216, 278
BspCNI CTCAG 3 cut(s) 30, 127, 319
BspFNI CGCG 1 cut(s) 237
BspLI GGNNCC 4 cut(s) 189, 279, 357, 375
BspPI GGATC 1 cut(s) 346
BspQI GCTCTTC 1 cut(s) 237
BspT104I TTCGAA 1 cut(s) 512
BsrFI RCCGGY 3 cut(s) 145, 212, 274
BsrI ACTGG 1 cut(s) 191
BssAI RCCGGY 3 cut(s) 145, 212, 274
BssECI CCNNGG 2 cut(s) 174, 504
BssMI GATC 2 cut(s) 331, 338
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 346
Bst6I CTCTTC 1 cut(s) 237
BstBI TTCGAA 1 cut(s) 512
BstC8I GCNNGC 6 cut(s) 131, 143, 147, 276, 467, 532
BstDEI CTNAG 4 cut(s) 17, 114, 306, 567
BstDSI CCRYGG 1 cut(s) 504
BstF5I GGATG 2 cut(s) 284, 437
BstFNI CGCG 1 cut(s) 237
BstHHI GCGC 2 cut(s) 141, 237
BstKTI GATC 2 cut(s) 334, 341
BstMBI GATC 2 cut(s) 331, 338
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 5 cut(s) 142, 151, 253, 262, 271
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 6 cut(s) 99, 149, 174, 216, 408, 428
BstSFI CTRYAG 1 cut(s) 342
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 148
BstX2I RGATCY 2 cut(s) 331, 338
BstYI RGATCY 2 cut(s) 331, 338
BsuRI GGCC 6 cut(s) 57, 104, 149, 154, 216, 278
BtgI CCRYGG 1 cut(s) 504
BtsCI GGATG 2 cut(s) 284, 437
Cac8I GCNNGC 6 cut(s) 131, 143, 147, 276, 467, 532
CfoI GCGC 2 cut(s) 141, 237
Cfr10I RCCGGY 3 cut(s) 145, 212, 274
Cfr13I GGNCC 5 cut(s) 102, 148, 178, 277, 356
DdeI CTNAG 4 cut(s) 17, 114, 306, 567
DpnI GATC 2 cut(s) 333, 340
DpnII GATC 2 cut(s) 331, 338
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Ecl136II GAGCTC 3 cut(s) 247, 265, 465
Eco147I AGGCCT 1 cut(s) 57
Eco24I GRGCYC 3 cut(s) 249, 267, 467
Eco47I GGWCC 2 cut(s) 178, 356
Eco53kI GAGCTC 3 cut(s) 247, 265, 465
Eco57I CTGAAG 1 cut(s) 563
Eco88I CYCGRG 1 cut(s) 416
EcoICRI GAGCTC 3 cut(s) 247, 265, 465
EcoRII CCWGG 1 cut(s) 216
EcoT38I GRGCYC 3 cut(s) 249, 267, 467
FaiI YATR 1 cut(s) 446
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FauI CCCGC 1 cut(s) 462
Fnu4HI GCNGC 5 cut(s) 127, 134, 137, 238, 528
FokI GGATG 2 cut(s) 271, 424
FriOI GRGCYC 3 cut(s) 249, 267, 467
Fsp4HI GCNGC 5 cut(s) 127, 134, 137, 238, 528
GlaI GCGC 2 cut(s) 140, 236
GluI GCNGC 5 cut(s) 127, 134, 137, 238, 528
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 6 cut(s) 57, 104, 149, 154, 216, 278
HapII CCGG 9 cut(s) 100, 146, 151, 176, 213, 257, 275, 410, 429
HhaI GCGC 2 cut(s) 141, 237
Hin6I GCGC 2 cut(s) 139, 235
HinP1I GCGC 2 cut(s) 139, 235
HindIII AAGCTT 1 cut(s) 545
HinfI GANTC 2 cut(s) 295, 390
HpaII CCGG 9 cut(s) 100, 146, 151, 176, 213, 257, 275, 410, 429
HphI GGTGA 2 cut(s) 202, 294
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 5 cut(s) 72, 309, 338, 360, 462
Hpy188III TCNNGA 4 cut(s) 87, 181, 250, 329
Hpy8I GTNNAC 1 cut(s) 23
HpyAV CCTTC 4 cut(s) 47, 54, 178, 364
HpyCH4III ACNGT 1 cut(s) 346
HpyF10VI GCNNNNNNNGC 5 cut(s) 142, 151, 253, 262, 271
HpyF3I CTNAG 4 cut(s) 17, 114, 306, 567
HspAI GCGC 2 cut(s) 139, 235
KroI GCCGGC 2 cut(s) 145, 274
KroNI GCCGGC 2 cut(s) 147, 276
Kzo9I GATC 2 cut(s) 331, 338
LguI GCTCTTC 1 cut(s) 237
LmnI GCTCC 4 cut(s) 193, 252, 262, 270
Lsp1109I GCAGC 1 cut(s) 148
MaeIII GTNAC 1 cut(s) 537
MalI GATC 2 cut(s) 333, 340
MboI GATC 2 cut(s) 331, 338
MboII GAAGA 4 cut(s) 254, 379, 478, 542
MflI RGATCY 2 cut(s) 331, 338
MhlI GDGCHC 3 cut(s) 249, 267, 467
MluCI AATT 1 cut(s) 559
MlyI GAGTC 1 cut(s) 384
MroNI GCCGGC 2 cut(s) 145, 274
MseI TTAA 3 cut(s) 36, 405, 558
MspI CCGG 9 cut(s) 100, 146, 151, 176, 213, 257, 275, 410, 429
MspR9I CCNGG 6 cut(s) 101, 151, 176, 218, 410, 430
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 5 cut(s) 142, 151, 253, 262, 271
NaeI GCCGGC 2 cut(s) 147, 276
NciI CCSGG 5 cut(s) 101, 151, 176, 410, 430
NdeII GATC 2 cut(s) 331, 338
NgoMIV GCCGGC 2 cut(s) 145, 274
NlaIV GGNNCC 4 cut(s) 189, 279, 357, 375
NspV TTCGAA 1 cut(s) 512
PceI AGGCCT 1 cut(s) 57
PciSI GCTCTTC 1 cut(s) 237
PdiI GCCGGC 2 cut(s) 147, 276
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 5 cut(s) 128, 135, 138, 239, 529
PleI GAGTC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 384
Psp124BI GAGCTC 3 cut(s) 249, 267, 467
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 4 cut(s) 189, 279, 357, 375
PspPI GGNCC 5 cut(s) 102, 148, 178, 277, 356
PsuI RGATCY 2 cut(s) 331, 338
SacI GAGCTC 3 cut(s) 249, 267, 467
SapI GCTCTTC 1 cut(s) 237
SaqAI TTAA 3 cut(s) 36, 405, 558
SatI GCNGC 5 cut(s) 127, 134, 137, 238, 528
Sau3AI GATC 2 cut(s) 331, 338
Sau96I GGNCC 5 cut(s) 102, 148, 178, 277, 356
SchI GAGTC 1 cut(s) 384
ScrFI CCNGG 6 cut(s) 101, 151, 176, 218, 410, 430
SduI GDGCHC 3 cut(s) 249, 267, 467
SetI ASST 8 cut(s) 170, 222, 249, 267, 307, 375, 467, 549
SfcI CTRYAG 1 cut(s) 342
SfuI TTCGAA 1 cut(s) 512
SinI GGWCC 2 cut(s) 178, 356
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 1 cut(s) 559
SseBI AGGCCT 1 cut(s) 57
SsiI CCGC 6 cut(s) 124, 127, 134, 237, 455, 528
SstI GAGCTC 3 cut(s) 249, 267, 467
StuI AGGCCT 1 cut(s) 57
StyD4I CCNGG 6 cut(s) 99, 149, 174, 216, 408, 428
TaaI ACNGT 1 cut(s) 346
TaqI TCGA 2 cut(s) 512, 553
TasI AATT 1 cut(s) 559
TauI GCSGC 4 cut(s) 129, 136, 240, 530
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 3 cut(s) 36, 405, 558
Tru9I TTAA 3 cut(s) 36, 405, 558
TseI GCWGC 1 cut(s) 136
TspDTI ATGAA 2 cut(s) 89, 537
TspGWI ACGGA 1 cut(s) 468
VpaK11BI GGWCC 2 cut(s) 178, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.