Rh6CG394000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0005989
Physical Location & Seq
Forward (+)
58189968 .. 58191276
1309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG394000.1

Sequence Viewer

Length: 582 bp
ATGGTTGTTGAAGTTCTCAGTCCACAAGATTGCCTCAAACACCCTTCAAGTGAAGGCCTCCTCTCGCTTCCGATGAAATACCACTCCCGAAACCCTAACCCTACCCCTAACCGGGCCGCCCGTCCCCAGTCCGACCGCCGCAAGCCGCAGCGCAAGCCGGCCCGGCCTAACACCACCACCTCCTCCCCGGTCCAGAAGGCTCCAGTTCCCCAAGCCCTCCTCACCGGCCAGGTCAAAATCCTCAAGCGCGGCGAAGAGCTCCCGAAGCCGGAGGAGCTCCCAAAGCCGGCGCCATCATCCAAAGAGAATCGCTCACCTCAGAAACAGAACCAGAAAGTTCCAGATCTCGGATCTACAGTTCGTTTGGGTCCGAACCCGAAGAAGGTTCCCCAGCAGACCCGACTCGCTGACCCGGTTAACCCGGCTCTCGGGTTCTACGCCGGGTCGTCATCCTGTATAGCCTCCCCGCCTCCGAGCTCGCTTCCACTTCCCTCTTTCTTCGCAAAGAAGAACGCCGTCGTTTCGAACACCGATGAAGCCGCCAGCGAGTTACTGAAGCTTCTTCGGCTTAATTTATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

193

Amino Acids

20.92

Weight (kDa)

10.23

Isoelectric Point (pI)

73.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 289
AccII CGCG 1 cut(s) 249
AciI CCGC 7 cut(s) 117, 136, 139, 146, 249, 467, 540
AclWI GGATC 1 cut(s) 358
AcoI YGGCCR 1 cut(s) 226
AcuI CTGAAG 1 cut(s) 575
AcyI GRCGYC 1 cut(s) 290
AfiI CCNNNNNNNGG 7 cut(s) 111, 112, 268, 286, 347, 382, 428
AgsI TTSAA 2 cut(s) 11, 48
AjnI CCWGG 1 cut(s) 228
AloI GAACNNNNNNTCC 2 cut(s) 342, 374
AluBI AGCT 4 cut(s) 259, 277, 477, 559
AluI AGCT 4 cut(s) 259, 277, 477, 559
Alw21I GWGCWC 3 cut(s) 261, 279, 479
AlwI GGATC 1 cut(s) 358
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 5 cut(s) 55, 114, 159, 164, 226
ApeKI GCWGC 1 cut(s) 148
AspLEI GCGC 3 cut(s) 153, 249, 292
AspS9I GGNCC 4 cut(s) 114, 160, 190, 368
AsuC2I CCSGG 6 cut(s) 113, 163, 188, 413, 422, 442
AsuHPI GGTGA 2 cut(s) 214, 306
AsuII TTCGAA 1 cut(s) 524
AvaI CYCGRG 1 cut(s) 428
AvaII GGWCC 2 cut(s) 190, 368
BanI GGYRCC 1 cut(s) 289
BanII GRGCYC 3 cut(s) 261, 279, 479
Bbv12I GWGCWC 3 cut(s) 261, 279, 479
BbvI GCAGC 1 cut(s) 160
BccI CCATC 1 cut(s) 301
BceAI ACGGC 1 cut(s) 500
BciT130I CCWGG 1 cut(s) 230
BcnI CCSGG 6 cut(s) 113, 163, 188, 413, 422, 442
BfmI CTRYAG 1 cut(s) 354
BfoI RGCGCY 1 cut(s) 293
BglI GCCNNNNNGGC 1 cut(s) 163
BglII AGATCT 1 cut(s) 343
BisI GCNGC 6 cut(s) 117, 139, 146, 149, 250, 540
BlsI GCNGC 6 cut(s) 118, 140, 147, 150, 251, 541
Bme1390I CCNGG 7 cut(s) 113, 163, 188, 230, 413, 422, 442
Bme18I GGWCC 2 cut(s) 190, 368
BmeT110I CYCGRG 1 cut(s) 428
BmgT120I GGNCC 4 cut(s) 114, 160, 190, 368
BmiI GGNNCC 4 cut(s) 201, 291, 369, 387
BmrFI CCNGG 7 cut(s) 113, 163, 188, 230, 413, 422, 442
BmrI ACTGGG 1 cut(s) 121
BmuI ACTGGG 1 cut(s) 121
BplI GAGNNNNNCTC 2 cut(s) 296, 328
BpmI CTGGAG 1 cut(s) 186
Bpu14I TTCGAA 1 cut(s) 524
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 6 cut(s) 113, 163, 188, 413, 422, 442
BsaHI GRCGYC 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 7 cut(s) 111, 112, 268, 286, 347, 382, 428
Bse118I RCCGGY 3 cut(s) 157, 224, 286
Bse1I ACTGG 2 cut(s) 127, 203
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 2 cut(s) 296, 449
BseLI CCNNNNNNNGG 7 cut(s) 111, 112, 268, 286, 347, 382, 428
BseMII CTCAG 2 cut(s) 31, 332
BseNI ACTGG 2 cut(s) 127, 203
BseRI GAGGAG 4 cut(s) 50, 172, 209, 287
BseXI GCAGC 1 cut(s) 160
BseYI CCCAGC 1 cut(s) 390
Bsh1236I CGCG 1 cut(s) 249
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 5 cut(s) 57, 116, 161, 166, 228
BshNI GGYRCC 1 cut(s) 289
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 3 cut(s) 261, 279, 479
BsiHKCI CYCGRG 1 cut(s) 428
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 7 cut(s) 111, 112, 268, 286, 347, 382, 428
BsmFI GGGAC 1 cut(s) 108
BsnI GGCC 5 cut(s) 57, 116, 161, 166, 228
BsoBI CYCGRG 1 cut(s) 428
Bsp119I TTCGAA 1 cut(s) 524
Bsp1286I GDGCHC 3 cut(s) 261, 279, 479
Bsp143I GATC 2 cut(s) 343, 350
BspACI CCGC 7 cut(s) 117, 136, 139, 146, 249, 467, 540
BspANI GGCC 5 cut(s) 57, 116, 161, 166, 228
BspCNI CTCAG 2 cut(s) 30, 331
BspFNI CGCG 1 cut(s) 249
BspLI GGNNCC 4 cut(s) 201, 291, 369, 387
BspPI GGATC 1 cut(s) 358
BspQI GCTCTTC 1 cut(s) 249
BspT104I TTCGAA 1 cut(s) 524
BspT107I GGYRCC 1 cut(s) 289
BsrFI RCCGGY 3 cut(s) 157, 224, 286
BsrI ACTGG 2 cut(s) 127, 203
BssAI RCCGGY 3 cut(s) 157, 224, 286
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 2 cut(s) 343, 350
BssNI GRCGYC 1 cut(s) 290
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 358
Bst6I CTCTTC 1 cut(s) 249
BstACI GRCGYC 1 cut(s) 290
BstBI TTCGAA 1 cut(s) 524
BstC8I GCNNGC 6 cut(s) 143, 155, 159, 288, 479, 544
BstDEI CTNAG 3 cut(s) 17, 318, 579
BstF5I GGATG 2 cut(s) 296, 449
BstFNI CGCG 1 cut(s) 249
BstH2I RGCGCY 1 cut(s) 293
BstHHI GCGC 3 cut(s) 153, 249, 292
BstKTI GATC 2 cut(s) 346, 353
BstMBI GATC 2 cut(s) 343, 350
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 6 cut(s) 154, 163, 265, 274, 283, 565
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 7 cut(s) 111, 161, 186, 228, 411, 420, 440
BstSFI CTRYAG 1 cut(s) 354
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 160
BstX2I RGATCY 2 cut(s) 343, 350
BstYI RGATCY 2 cut(s) 343, 350
BsuRI GGCC 5 cut(s) 57, 116, 161, 166, 228
BtsCI GGATG 2 cut(s) 296, 449
Cac8I GCNNGC 6 cut(s) 143, 155, 159, 288, 479, 544
CfoI GCGC 3 cut(s) 153, 249, 292
Cfr10I RCCGGY 3 cut(s) 157, 224, 286
Cfr13I GGNCC 4 cut(s) 114, 160, 190, 368
DdeI CTNAG 3 cut(s) 17, 318, 579
DinI GGCGCC 1 cut(s) 291
DpnI GATC 2 cut(s) 345, 352
DpnII GATC 2 cut(s) 343, 350
EaeI YGGCCR 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Ecl136II GAGCTC 3 cut(s) 259, 277, 477
Eco147I AGGCCT 1 cut(s) 57
Eco24I GRGCYC 3 cut(s) 261, 279, 479
Eco47I GGWCC 2 cut(s) 190, 368
Eco53kI GAGCTC 3 cut(s) 259, 277, 477
Eco57I CTGAAG 1 cut(s) 575
Eco88I CYCGRG 1 cut(s) 428
EcoICRI GAGCTC 3 cut(s) 259, 277, 477
EcoRII CCWGG 1 cut(s) 228
EcoT38I GRGCYC 3 cut(s) 261, 279, 479
EgeI GGCGCC 1 cut(s) 291
EheI GGCGCC 1 cut(s) 291
FaiI YATR 1 cut(s) 458
FaqI GGGAC 1 cut(s) 108
FauI CCCGC 1 cut(s) 474
Fnu4HI GCNGC 6 cut(s) 117, 139, 146, 149, 250, 540
FokI GGATG 2 cut(s) 283, 436
FriOI GRGCYC 3 cut(s) 261, 279, 479
Fsp4HI GCNGC 6 cut(s) 117, 139, 146, 149, 250, 540
GlaI GCGC 3 cut(s) 152, 248, 291
GluI GCNGC 6 cut(s) 117, 139, 146, 149, 250, 540
GsaI CCCAGC 1 cut(s) 394
GsuI CTGGAG 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 293
HaeIII GGCC 5 cut(s) 57, 116, 161, 166, 228
HhaI GCGC 3 cut(s) 153, 249, 292
Hin1I GRCGYC 1 cut(s) 290
Hin6I GCGC 3 cut(s) 151, 247, 290
HinP1I GCGC 3 cut(s) 151, 247, 290
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HindIII AAGCTT 1 cut(s) 557
HinfI GANTC 2 cut(s) 307, 402
HpaI GTTAAC 1 cut(s) 418
HphI GGTGA 2 cut(s) 214, 306
Hpy166II GTNNAC 2 cut(s) 23, 418
Hpy188I TCNGA 6 cut(s) 72, 133, 321, 350, 372, 474
Hpy188III TCNNGA 4 cut(s) 87, 193, 262, 341
Hpy8I GTNNAC 2 cut(s) 23, 418
Hpy99I CGWCG 1 cut(s) 521
HpyAV CCTTC 4 cut(s) 47, 54, 190, 376
HpyCH4III ACNGT 1 cut(s) 358
HpyF10VI GCNNNNNNNGC 6 cut(s) 154, 163, 265, 274, 283, 565
HpyF3I CTNAG 3 cut(s) 17, 318, 579
Hsp92I GRCGYC 1 cut(s) 290
HspAI GCGC 3 cut(s) 151, 247, 290
KasI GGCGCC 1 cut(s) 289
KroI GCCGGC 2 cut(s) 157, 286
KroNI GCCGGC 2 cut(s) 159, 288
KspAI GTTAAC 1 cut(s) 418
Kzo9I GATC 2 cut(s) 343, 350
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 4 cut(s) 205, 264, 274, 282
Lsp1109I GCAGC 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 549
MalI GATC 2 cut(s) 345, 352
MboI GATC 2 cut(s) 343, 350
MboII GAAGA 5 cut(s) 266, 391, 490, 520, 554
MflI RGATCY 2 cut(s) 343, 350
MhlI GDGCHC 3 cut(s) 261, 279, 479
MluCI AATT 1 cut(s) 571
Mly113I GGCGCC 1 cut(s) 290
MlyI GAGTC 1 cut(s) 396
MmeI TCCRAC 1 cut(s) 156
MroNI GCCGGC 2 cut(s) 157, 286
MseI TTAA 2 cut(s) 417, 570
MspR9I CCNGG 7 cut(s) 113, 163, 188, 230, 413, 422, 442
MvaI CCWGG 1 cut(s) 230
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 6 cut(s) 154, 163, 265, 274, 283, 565
NaeI GCCGGC 2 cut(s) 159, 288
NarI GGCGCC 1 cut(s) 290
NciI CCSGG 6 cut(s) 113, 163, 188, 413, 422, 442
NdeII GATC 2 cut(s) 343, 350
NgoMIV GCCGGC 2 cut(s) 157, 286
NlaIV GGNNCC 4 cut(s) 201, 291, 369, 387
NspV TTCGAA 1 cut(s) 524
PceI AGGCCT 1 cut(s) 57
PciSI GCTCTTC 1 cut(s) 249
PdiI GCCGGC 2 cut(s) 159, 288
PfeI GAWTC 1 cut(s) 307
PkrI GCNGC 6 cut(s) 118, 140, 147, 150, 251, 541
PleI GAGTC 1 cut(s) 396
PluTI GGCGCC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 396
Psp124BI GAGCTC 3 cut(s) 261, 279, 479
Psp6I CCWGG 1 cut(s) 228
PspFI CCCAGC 1 cut(s) 390
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 4 cut(s) 201, 291, 369, 387
PspPI GGNCC 4 cut(s) 114, 160, 190, 368
PsuI RGATCY 2 cut(s) 343, 350
SacI GAGCTC 3 cut(s) 261, 279, 479
SapI GCTCTTC 1 cut(s) 249
SaqAI TTAA 2 cut(s) 417, 570
SatI GCNGC 6 cut(s) 117, 139, 146, 149, 250, 540
Sau3AI GATC 2 cut(s) 343, 350
Sau96I GGNCC 4 cut(s) 114, 160, 190, 368
SchI GAGTC 1 cut(s) 396
ScrFI CCNGG 7 cut(s) 113, 163, 188, 230, 413, 422, 442
SduI GDGCHC 3 cut(s) 261, 279, 479
SetI ASST 8 cut(s) 182, 234, 261, 279, 319, 387, 479, 561
SfcI CTRYAG 1 cut(s) 354
SfoI GGCGCC 1 cut(s) 291
SfuI TTCGAA 1 cut(s) 524
SinI GGWCC 2 cut(s) 190, 368
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 1 cut(s) 571
SseBI AGGCCT 1 cut(s) 57
SsiI CCGC 7 cut(s) 117, 136, 139, 146, 249, 467, 540
SspDI GGCGCC 1 cut(s) 289
SstI GAGCTC 3 cut(s) 261, 279, 479
StuI AGGCCT 1 cut(s) 57
StyD4I CCNGG 7 cut(s) 111, 161, 186, 228, 411, 420, 440
TaaI ACNGT 1 cut(s) 358
TaqI TCGA 1 cut(s) 524
TasI AATT 1 cut(s) 571
TauI GCSGC 5 cut(s) 119, 141, 148, 252, 542
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 2 cut(s) 417, 570
Tru9I TTAA 2 cut(s) 417, 570
TseI GCWGC 1 cut(s) 148
TspDTI ATGAA 2 cut(s) 89, 549
VpaK11BI GGWCC 2 cut(s) 190, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.