Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001574.1

Orthogroup ID

OG0005989

Physical Location & Seq

Genomic Coordinates Forward (+)

11334 .. 11903

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001574.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atggttgttgaagttctcagtccacaagattgcctcaaacacccttcaagtgaaggcctcctctcgcttccgatgaaataccactcccgaaaccctaaccgggccacccgtccccagcccgaccgccgcaagccgcagcgcaagccggcccggcctaacaccaccacctcctccccggtccagaaggctccagttccccaagccctcctcaccggccaggtcaaaatcctcaagcgcggcgaagagctcccaaagccggaggagctcccaaagccggcgccatcatccaaagagaatcgctcacctcagaaacagaaccagaaagttccagatctcggatctacagttcgtctgggtccgaacccgaagaaggttcccaagcagacccgactcgctgacccggttaacccggctctcgggttctacgccgggtcgtcatcctgtatagcctccccgcctccgagctcgcttccacttccgtctttcttcgcaaagaagaacgccgtggtttcgaacaccgatgaagccgccagcgagttactgaagcttcttcggcttaatttatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

189

Amino Acids

20.55

Weight (kDa)

10.26

Isoelectric Point (pI)

72.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25250 AT4G32020
fragaria_vesca	FvH4_1g16040 FvH4_2g28260 FvH4_6g47730 FvH4_7g22490 FvH4_7g24010
malus_domestica	MD15G1131400.v1.1
prunus_persica	Prupe.1G486700_v2.0.a1 Prupe.1G486800_v2.0.a1
pyrus_communis	pycom08g13360 pycom15g11860
rosa_chinensis	RchiOBHm_Chr6g0297171
rosa_laevigata	RLG00000011625 RLG00000027299
rosa_multiflora	Rmu_co8054888.1_g000001 Rmu_sc0001574.1_g000004 Rmu_sc0007424.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170820
rosa_rugosa	Rorug01G0334300 Rorug06G0269500
rosa_samantha	Rh6AG380600 Rh6BG388700 Rh6CG394000 Rh6DG380600
rosa_wichuraiana	Rw1G030330 Rw6G033140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	277
AccII	CGCG	1 cut(s)	237
AciI	CCGC	6 cut(s)	124, 127, 134, 237, 455, 528
AclWI	GGATC	1 cut(s)	346
AcoI	YGGCCR	1 cut(s)	214
AcuI	CTGAAG	1 cut(s)	563
AcyI	GRCGYC	1 cut(s)	278
AfiI	CCNNNNNNNGG	6 cut(s)	100, 256, 274, 335, 370, 416
AgsI	TTSAA	2 cut(s)	11, 48
AjnI	CCWGG	1 cut(s)	216
AloI	GAACNNNNNNTCC	2 cut(s)	330, 362
AluBI	AGCT	4 cut(s)	247, 265, 465, 547
AluI	AGCT	4 cut(s)	247, 265, 465, 547
Alw21I	GWGCWC	3 cut(s)	249, 267, 467
AlwI	GGATC	1 cut(s)	346
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	5 cut(s)	55, 102, 147, 152, 214
ApeKI	GCWGC	1 cut(s)	136
AspLEI	GCGC	3 cut(s)	141, 237, 280
AspS9I	GGNCC	4 cut(s)	102, 148, 178, 356
AsuC2I	CCSGG	6 cut(s)	101, 151, 176, 401, 410, 430
AsuHPI	GGTGA	2 cut(s)	202, 294
AsuII	TTCGAA	1 cut(s)	512
AvaI	CYCGRG	1 cut(s)	416
AvaII	GGWCC	2 cut(s)	178, 356
BanI	GGYRCC	1 cut(s)	277
BanII	GRGCYC	3 cut(s)	249, 267, 467
Bbv12I	GWGCWC	3 cut(s)	249, 267, 467
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	1 cut(s)	289
BceAI	ACGGC	1 cut(s)	488
BciT130I	CCWGG	1 cut(s)	218
BcnI	CCSGG	6 cut(s)	101, 151, 176, 401, 410, 430
BfmI	CTRYAG	1 cut(s)	342
BfoI	RGCGCY	1 cut(s)	281
BglI	GCCNNNNNGGC	1 cut(s)	151
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	5 cut(s)	127, 134, 137, 238, 528
BlsI	GCNGC	5 cut(s)	128, 135, 138, 239, 529
Bme1390I	CCNGG	7 cut(s)	101, 151, 176, 218, 401, 410, 430
Bme18I	GGWCC	2 cut(s)	178, 356
BmeT110I	CYCGRG	1 cut(s)	416
BmgT120I	GGNCC	4 cut(s)	102, 148, 178, 356
BmiI	GGNNCC	4 cut(s)	189, 279, 357, 375
BmrFI	CCNGG	7 cut(s)	101, 151, 176, 218, 401, 410, 430
BplI	GAGNNNNNCTC	2 cut(s)	284, 316
BpmI	CTGGAG	1 cut(s)	174
Bpu14I	TTCGAA	1 cut(s)	512
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	6 cut(s)	101, 151, 176, 401, 410, 430
BsaHI	GRCGYC	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	174, 504
Bsc4I	CCNNNNNNNGG	6 cut(s)	100, 256, 274, 335, 370, 416
Bse118I	RCCGGY	3 cut(s)	145, 212, 274
Bse1I	ACTGG	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	174, 504
BseGI	GGATG	2 cut(s)	284, 437
BseLI	CCNNNNNNNGG	6 cut(s)	100, 256, 274, 335, 370, 416
BseMII	CTCAG	2 cut(s)	31, 320
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	4 cut(s)	50, 160, 197, 275
BseXI	GCAGC	1 cut(s)	148
BseYI	CCCAGC	1 cut(s)	114
Bsh1236I	CGCG	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	5 cut(s)	57, 104, 149, 154, 216
BshNI	GGYRCC	1 cut(s)	277
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	3 cut(s)	249, 267, 467
BsiHKCI	CYCGRG	1 cut(s)	416
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	6 cut(s)	100, 256, 274, 335, 370, 416
BsmFI	GGGAC	1 cut(s)	96
BsnI	GGCC	5 cut(s)	57, 104, 149, 154, 216
BsoBI	CYCGRG	1 cut(s)	416
Bsp119I	TTCGAA	1 cut(s)	512
Bsp1286I	GDGCHC	3 cut(s)	249, 267, 467
Bsp143I	GATC	2 cut(s)	331, 338
BspACI	CCGC	6 cut(s)	124, 127, 134, 237, 455, 528
BspANI	GGCC	5 cut(s)	57, 104, 149, 154, 216
BspCNI	CTCAG	2 cut(s)	30, 319
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	4 cut(s)	189, 279, 357, 375
BspPI	GGATC	1 cut(s)	346
BspQI	GCTCTTC	1 cut(s)	237
BspT104I	TTCGAA	1 cut(s)	512
BspT107I	GGYRCC	1 cut(s)	277
BsrFI	RCCGGY	3 cut(s)	145, 212, 274
BsrI	ACTGG	1 cut(s)	191
BssAI	RCCGGY	3 cut(s)	145, 212, 274
BssECI	CCNNGG	2 cut(s)	174, 504
BssMI	GATC	2 cut(s)	331, 338
BssNI	GRCGYC	1 cut(s)	278
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	1 cut(s)	237
BstACI	GRCGYC	1 cut(s)	278
BstBI	TTCGAA	1 cut(s)	512
BstC8I	GCNNGC	6 cut(s)	131, 143, 147, 276, 467, 532
BstDEI	CTNAG	3 cut(s)	17, 306, 567
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	2 cut(s)	284, 437
BstFNI	CGCG	1 cut(s)	237
BstH2I	RGCGCY	1 cut(s)	281
BstHHI	GCGC	3 cut(s)	141, 237, 280
BstKTI	GATC	2 cut(s)	334, 341
BstMBI	GATC	2 cut(s)	331, 338
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	6 cut(s)	142, 151, 253, 262, 271, 553
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	7 cut(s)	99, 149, 174, 216, 399, 408, 428
BstSFI	CTRYAG	1 cut(s)	342
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	148
BstX2I	RGATCY	2 cut(s)	331, 338
BstYI	RGATCY	2 cut(s)	331, 338
BsuRI	GGCC	5 cut(s)	57, 104, 149, 154, 216
BtgI	CCRYGG	1 cut(s)	504
BtsCI	GGATG	2 cut(s)	284, 437
Cac8I	GCNNGC	6 cut(s)	131, 143, 147, 276, 467, 532
CfoI	GCGC	3 cut(s)	141, 237, 280
Cfr10I	RCCGGY	3 cut(s)	145, 212, 274
Cfr13I	GGNCC	4 cut(s)	102, 148, 178, 356
DdeI	CTNAG	3 cut(s)	17, 306, 567
DinI	GGCGCC	1 cut(s)	279
DpnI	GATC	2 cut(s)	333, 340
DpnII	GATC	2 cut(s)	331, 338
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Ecl136II	GAGCTC	3 cut(s)	247, 265, 465
Eco147I	AGGCCT	1 cut(s)	57
Eco24I	GRGCYC	3 cut(s)	249, 267, 467
Eco47I	GGWCC	2 cut(s)	178, 356
Eco53kI	GAGCTC	3 cut(s)	247, 265, 465
Eco57I	CTGAAG	1 cut(s)	563
Eco88I	CYCGRG	1 cut(s)	416
EcoICRI	GAGCTC	3 cut(s)	247, 265, 465
EcoRII	CCWGG	1 cut(s)	216
EcoT38I	GRGCYC	3 cut(s)	249, 267, 467
EgeI	GGCGCC	1 cut(s)	279
EheI	GGCGCC	1 cut(s)	279
FaiI	YATR	1 cut(s)	446
FaqI	GGGAC	1 cut(s)	96
FauI	CCCGC	1 cut(s)	462
Fnu4HI	GCNGC	5 cut(s)	127, 134, 137, 238, 528
FokI	GGATG	2 cut(s)	271, 424
FriOI	GRGCYC	3 cut(s)	249, 267, 467
Fsp4HI	GCNGC	5 cut(s)	127, 134, 137, 238, 528
GlaI	GCGC	3 cut(s)	140, 236, 279
GluI	GCNGC	5 cut(s)	127, 134, 137, 238, 528
GsaI	CCCAGC	1 cut(s)	118
GsuI	CTGGAG	1 cut(s)	174
HaeII	RGCGCY	1 cut(s)	281
HaeIII	GGCC	5 cut(s)	57, 104, 149, 154, 216
HhaI	GCGC	3 cut(s)	141, 237, 280
Hin1I	GRCGYC	1 cut(s)	278
Hin6I	GCGC	3 cut(s)	139, 235, 278
HinP1I	GCGC	3 cut(s)	139, 235, 278
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	545
HinfI	GANTC	2 cut(s)	295, 390
HpaI	GTTAAC	1 cut(s)	406
HphI	GGTGA	2 cut(s)	202, 294
Hpy166II	GTNNAC	2 cut(s)	23, 406
Hpy188I	TCNGA	5 cut(s)	72, 309, 338, 360, 462
Hpy188III	TCNNGA	3 cut(s)	87, 181, 329
Hpy8I	GTNNAC	2 cut(s)	23, 406
HpyAV	CCTTC	4 cut(s)	47, 54, 178, 364
HpyCH4III	ACNGT	1 cut(s)	346
HpyF10VI	GCNNNNNNNGC	6 cut(s)	142, 151, 253, 262, 271, 553
HpyF3I	CTNAG	3 cut(s)	17, 306, 567
Hsp92I	GRCGYC	1 cut(s)	278
HspAI	GCGC	3 cut(s)	139, 235, 278
KasI	GGCGCC	1 cut(s)	277
KroI	GCCGGC	2 cut(s)	145, 274
KroNI	GCCGGC	2 cut(s)	147, 276
KspAI	GTTAAC	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	331, 338
LguI	GCTCTTC	1 cut(s)	237
LmnI	GCTCC	4 cut(s)	193, 252, 262, 270
Lsp1109I	GCAGC	1 cut(s)	148
MaeIII	GTNAC	1 cut(s)	537
MalI	GATC	2 cut(s)	333, 340
MboI	GATC	2 cut(s)	331, 338
MboII	GAAGA	5 cut(s)	254, 379, 478, 508, 542
MflI	RGATCY	2 cut(s)	331, 338
MhlI	GDGCHC	3 cut(s)	249, 267, 467
MluCI	AATT	1 cut(s)	559
Mly113I	GGCGCC	1 cut(s)	278
MlyI	GAGTC	1 cut(s)	384
MroNI	GCCGGC	2 cut(s)	145, 274
MseI	TTAA	2 cut(s)	405, 558
MspR9I	CCNGG	7 cut(s)	101, 151, 176, 218, 401, 410, 430
MvaI	CCWGG	1 cut(s)	218
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	6 cut(s)	142, 151, 253, 262, 271, 553
NaeI	GCCGGC	2 cut(s)	147, 276
NarI	GGCGCC	1 cut(s)	278
NciI	CCSGG	6 cut(s)	101, 151, 176, 401, 410, 430
NdeII	GATC	2 cut(s)	331, 338
NgoMIV	GCCGGC	2 cut(s)	145, 274
NlaIV	GGNNCC	4 cut(s)	189, 279, 357, 375
NspV	TTCGAA	1 cut(s)	512
PceI	AGGCCT	1 cut(s)	57
PciSI	GCTCTTC	1 cut(s)	237
PdiI	GCCGGC	2 cut(s)	147, 276
PfeI	GAWTC	1 cut(s)	295
PkrI	GCNGC	5 cut(s)	128, 135, 138, 239, 529
PleI	GAGTC	1 cut(s)	384
PluTI	GGCGCC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	384
Psp124BI	GAGCTC	3 cut(s)	249, 267, 467
Psp6I	CCWGG	1 cut(s)	216
PspFI	CCCAGC	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	4 cut(s)	189, 279, 357, 375
PspPI	GGNCC	4 cut(s)	102, 148, 178, 356
PsuI	RGATCY	2 cut(s)	331, 338
SacI	GAGCTC	3 cut(s)	249, 267, 467
SapI	GCTCTTC	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	405, 558
SatI	GCNGC	5 cut(s)	127, 134, 137, 238, 528
Sau3AI	GATC	2 cut(s)	331, 338
Sau96I	GGNCC	4 cut(s)	102, 148, 178, 356
SchI	GAGTC	1 cut(s)	384
ScrFI	CCNGG	7 cut(s)	101, 151, 176, 218, 401, 410, 430
SduI	GDGCHC	3 cut(s)	249, 267, 467
SetI	ASST	8 cut(s)	170, 222, 249, 267, 307, 375, 467, 549
SfcI	CTRYAG	1 cut(s)	342
SfoI	GGCGCC	1 cut(s)	279
SfuI	TTCGAA	1 cut(s)	512
SinI	GGWCC	2 cut(s)	178, 356
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	1 cut(s)	559
SseBI	AGGCCT	1 cut(s)	57
SsiI	CCGC	6 cut(s)	124, 127, 134, 237, 455, 528
SspDI	GGCGCC	1 cut(s)	277
SstI	GAGCTC	3 cut(s)	249, 267, 467
StuI	AGGCCT	1 cut(s)	57
StyD4I	CCNGG	7 cut(s)	99, 149, 174, 216, 399, 408, 428
TaaI	ACNGT	1 cut(s)	346
TaqI	TCGA	1 cut(s)	512
TasI	AATT	1 cut(s)	559
TauI	GCSGC	4 cut(s)	129, 136, 240, 530
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	2 cut(s)	405, 558
Tru9I	TTAA	2 cut(s)	405, 558
TseI	GCWGC	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	89, 537
TspGWI	ACGGA	1 cut(s)	468
VpaK11BI	GGWCC	2 cut(s)	178, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.