FvH4_7g24010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005989
Physical Location & Seq
Forward (+)
18596679 .. 18597089
411 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24010.t1

Sequence Viewer

Length: 396 bp
ATGGTTGTCGAAGTTCTCAGCCCACAAGACTGCCTCAAACACCCTTCATCTCACGGTCTCCTCTCTCTTCCGATGAAGTACCACCACCGCAACCCTACCCCTAACAAGGCCGCCCGTCCCCAGCCCGACCGCAGCAAGCCGCAGCCCAAGCCGGCCTCCCCGGTCCAGAAAGCTCTTGTTCCCCTCCTCACCGGCCCTGTCAAAATCCTCAAGCGCGGCAAAGACCTCCCCAAGCCGGAGGAGCTCCCGAAAGCCAAGGAGAATTGCTCCCCTCCGAAACAGAACCAGAAGGTTCCAGATCAGATCTCGGATCTACAGTTTTTCGGGTCCGAAAAACCCGAAGAAGGGTTTAAAGTTGTTTTGGATGTTAAAATTGCAATGGAATCAAAAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

132

Amino Acids

14.49

Weight (kDa)

9.6

Isoelectric Point (pI)

58.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 216
AciI CCGC 5 cut(s) 88, 111, 130, 140, 216
AclWI GGATC 1 cut(s) 318
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 4 cut(s) 106, 235, 344, 345
AluBI AGCT 2 cut(s) 173, 244
AluI AGCT 2 cut(s) 173, 244
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 1 cut(s) 318
AoxI GGCC 3 cut(s) 108, 153, 193
ApeKI GCWGC 2 cut(s) 132, 142
AspLEI GCGC 1 cut(s) 216
AspS9I GGNCC 3 cut(s) 163, 194, 327
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 181
AvaII GGWCC 2 cut(s) 163, 327
BanII GRGCYC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 2 cut(s) 144, 154
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 62
BfmI CTRYAG 1 cut(s) 314
BglII AGATCT 1 cut(s) 303
BisI GCNGC 5 cut(s) 111, 133, 140, 143, 217
BlsI GCNGC 5 cut(s) 112, 134, 141, 144, 218
Bme1390I CCNGG 1 cut(s) 161
Bme18I GGWCC 2 cut(s) 163, 327
BmgT120I GGNCC 3 cut(s) 163, 194, 327
BmiI GGNNCC 2 cut(s) 294, 328
BmrFI CCNGG 1 cut(s) 161
BplI GAGNNNNNCTC 2 cut(s) 251, 283
BpuEI CTTGAG 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 161
BsaI GGTCTC 1 cut(s) 62
BsaJI CCNNGG 2 cut(s) 159, 255
Bsc4I CCNNNNNNNGG 4 cut(s) 106, 235, 344, 345
Bse118I RCCGGY 2 cut(s) 151, 191
Bse3DI GCAATG 1 cut(s) 384
BseDI CCNNGG 2 cut(s) 159, 255
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 4 cut(s) 106, 235, 344, 345
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 1 cut(s) 31
BseRI GAGGAG 3 cut(s) 50, 176, 254
BseXI GCAGC 2 cut(s) 144, 154
BseYI CCCAGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 216
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 3 cut(s) 110, 155, 195
BsiEI CGRYCG 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 4 cut(s) 152, 161, 192, 236
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 4 cut(s) 106, 235, 344, 345
BsmAI GTCTC 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 3 cut(s) 110, 155, 195
Bso31I GGTCTC 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 3 cut(s) 298, 303, 310
BspACI CCGC 5 cut(s) 88, 111, 130, 140, 216
BspANI GGCC 3 cut(s) 110, 155, 195
BspCNI CTCAG 1 cut(s) 30
BspFNI CGCG 1 cut(s) 216
BspLI GGNNCC 2 cut(s) 294, 328
BspPI GGATC 1 cut(s) 318
BspTNI GGTCTC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 384
BsrFI RCCGGY 2 cut(s) 151, 191
BssAI RCCGGY 2 cut(s) 151, 191
BssECI CCNNGG 2 cut(s) 159, 255
BssMI GATC 3 cut(s) 298, 303, 310
BssT1I CCWWGG 1 cut(s) 255
Bst4CI ACNGT 2 cut(s) 56, 318
Bst6I CTCTTC 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 137, 153
BstDEI CTNAG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 370
BstFNI CGCG 1 cut(s) 216
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 3 cut(s) 301, 306, 313
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 3 cut(s) 298, 303, 310
BstMCI CGRYCG 1 cut(s) 130
BstMWI GCNNNNNNNGC 2 cut(s) 148, 241
BstSCI CCNGG 1 cut(s) 159
BstSFI CTRYAG 1 cut(s) 314
BstUI CGCG 1 cut(s) 216
BstV1I GCAGC 2 cut(s) 144, 154
BstX2I RGATCY 2 cut(s) 303, 310
BstYI RGATCY 2 cut(s) 303, 310
BsuRI GGCC 3 cut(s) 110, 155, 195
BtsCI GGATG 1 cut(s) 370
Cac8I GCNNGC 2 cut(s) 137, 153
CfoI GCGC 1 cut(s) 216
Cfr10I RCCGGY 2 cut(s) 151, 191
Cfr13I GGNCC 3 cut(s) 163, 194, 327
Csp6I GTAC 1 cut(s) 79
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 1 cut(s) 17
DpnI GATC 3 cut(s) 300, 305, 312
DpnII GATC 3 cut(s) 298, 303, 310
DraI TTTAAA 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Ecl136II GAGCTC 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 246
Eco31I GGTCTC 1 cut(s) 62
Eco47I GGWCC 2 cut(s) 163, 327
Eco53kI GAGCTC 1 cut(s) 244
EcoICRI GAGCTC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 255
FaqI GGGAC 1 cut(s) 102
Fnu4HI GCNGC 5 cut(s) 111, 133, 140, 143, 217
FokI GGATG 1 cut(s) 377
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 5 cut(s) 111, 133, 140, 143, 217
GlaI GCGC 1 cut(s) 215
GluI GCNGC 5 cut(s) 111, 133, 140, 143, 217
GsaI CCCAGC 1 cut(s) 124
HaeIII GGCC 3 cut(s) 110, 155, 195
HapII CCGG 4 cut(s) 152, 161, 192, 236
HhaI GCGC 1 cut(s) 216
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HinfI GANTC 1 cut(s) 383
HpaII CCGG 4 cut(s) 152, 161, 192, 236
HphI GGTGA 1 cut(s) 181
Hpy188I TCNGA 5 cut(s) 72, 276, 303, 310, 331
Hpy188III TCNNGA 3 cut(s) 166, 247, 296
HpyAV CCTTC 3 cut(s) 54, 283, 338
HpyCH4III ACNGT 2 cut(s) 56, 318
HpyCH4V TGCA 1 cut(s) 377
HpyF10VI GCNNNNNNNGC 2 cut(s) 148, 241
HpyF3I CTNAG 1 cut(s) 17
HspAI GCGC 1 cut(s) 214
KroI GCCGGC 1 cut(s) 151
KroNI GCCGGC 1 cut(s) 153
Kzo9I GATC 3 cut(s) 298, 303, 310
LmnI GCTCC 3 cut(s) 241, 249, 272
LpnPI CCDG 9 cut(s) 134, 165, 174, 179, 205, 210, 249, 299, 309
Lsp1109I GCAGC 2 cut(s) 144, 154
MalI GATC 3 cut(s) 300, 305, 312
MboI GATC 3 cut(s) 298, 303, 310
MboII GAAGA 2 cut(s) 59, 353
MflI RGATCY 2 cut(s) 303, 310
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 2 cut(s) 262, 372
MnlI CCTC 9 cut(s) 44, 71, 166, 194, 197, 218, 232, 236, 282
MroNI GCCGGC 1 cut(s) 151
MseI TTAA 2 cut(s) 351, 369
MspI CCGG 4 cut(s) 152, 161, 192, 236
MspR9I CCNGG 1 cut(s) 161
MvnI CGCG 1 cut(s) 216
MwoI GCNNNNNNNGC 2 cut(s) 148, 241
NaeI GCCGGC 1 cut(s) 153
NciI CCSGG 1 cut(s) 161
NdeII GATC 3 cut(s) 298, 303, 310
NgoMIV GCCGGC 1 cut(s) 151
NlaIV GGNNCC 2 cut(s) 294, 328
PdiI GCCGGC 1 cut(s) 153
PfeI GAWTC 1 cut(s) 383
PkrI GCNGC 5 cut(s) 112, 134, 141, 144, 218
Psp124BI GAGCTC 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 120
PspN4I GGNNCC 2 cut(s) 294, 328
PspPI GGNCC 3 cut(s) 163, 194, 327
PsuI RGATCY 2 cut(s) 303, 310
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SacI GAGCTC 1 cut(s) 246
SaqAI TTAA 2 cut(s) 351, 369
SatI GCNGC 5 cut(s) 111, 133, 140, 143, 217
Sau3AI GATC 3 cut(s) 298, 303, 310
Sau96I GGNCC 3 cut(s) 163, 194, 327
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 246
SetI ASST 4 cut(s) 175, 228, 246, 294
SfcI CTRYAG 1 cut(s) 314
SinI GGWCC 2 cut(s) 163, 327
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 2 cut(s) 262, 372
SsiI CCGC 5 cut(s) 88, 111, 130, 140, 216
SstI GAGCTC 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 2 cut(s) 56, 318
TaqI TCGA 1 cut(s) 9
TasI AATT 2 cut(s) 262, 372
TauI GCSGC 3 cut(s) 113, 142, 219
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 2 cut(s) 351, 369
Tru9I TTAA 2 cut(s) 351, 369
TseI GCWGC 2 cut(s) 132, 142
TspDTI ATGAA 2 cut(s) 36, 89
VpaK11BI GGWCC 2 cut(s) 163, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.