Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005989

Physical Location & Seq

Genomic Coordinates Reverse (-)

40515352 .. 40515867

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G486700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGGTGTTCAAGTTCTCAGTCCCCAGAATTGCCTCAAAGACTCTCTCTCACCTCAGCAAGCGCTGATGAATCCCAATCGAAACCCTAACCCTAATCGGGTCAGAACCTCTCCCCAAACCGACCGGAAGAAGCGAAGGCCGACCCGGCCCAACAACAACTCACCCTCTCCGGTCCAGAAACCCGCAGCCCCCAAGAATATCGTCATGGGCCAGGTCAAAATCCTAAAACGCGGCGACGAAATCCCCAAAGCGACTCCGGTTCGGTCACCACAGAAGCAGAATCCCAATCCCCAGGTTCCGGATCTCGGATCCACCAGCCGGATGGGTCCTGACTCGAAGAAGGTTCCGGAACGGAACTGGGCTTCCGGGTTCTACGCCGGGTCGTCGTCGTGTATAGCTGCGCCTCCCCCGGAGTCCCTACCTCTGCCGTCGTTCTTCGCAAAGAAGAGCGCCCCTTCAAGCACCGATGAAGCTGCAAGCGTGCTGCTGAAGCTTCTGCGGCTCAATTTGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

172

Amino Acids

18.54

Weight (kDa)

10.69

Isoelectric Point (pI)

76.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25250 AT4G32020
fragaria_vesca	FvH4_1g16040 FvH4_2g28260 FvH4_6g47730 FvH4_7g22490 FvH4_7g24010
malus_domestica	MD15G1131400.v1.1
prunus_persica	Prupe.1G486700_v2.0.a1 Prupe.1G486800_v2.0.a1
pyrus_communis	pycom08g13360 pycom15g11860
rosa_chinensis	RchiOBHm_Chr6g0297171
rosa_laevigata	RLG00000011625 RLG00000027299
rosa_multiflora	Rmu_co8054888.1_g000001 Rmu_sc0001574.1_g000004 Rmu_sc0007424.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170820
rosa_rugosa	Rorug01G0334300 Rorug06G0269500
rosa_samantha	Rh6AG380600 Rh6BG388700 Rh6CG394000 Rh6DG380600
rosa_wichuraiana	Rw1G030330 Rw6G033140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	231
AccIII	TCCGGA	2 cut(s)	298, 346
AciI	CCGC	3 cut(s)	183, 231, 499
AclWI	GGATC	3 cut(s)	303, 309, 316
AcuI	CTGAAG	1 cut(s)	509
AfeI	AGCGCT	1 cut(s)	63
AfiI	CCNNNNNNNGG	4 cut(s)	97, 298, 305, 318
AgsI	TTSAA	2 cut(s)	11, 459
AjnI	CCWGG	2 cut(s)	210, 291
AloI	GAACNNNNNNTCC	2 cut(s)	347, 379
AluBI	AGCT	3 cut(s)	398, 473, 493
AluI	AGCT	3 cut(s)	398, 473, 493
AlwI	GGATC	3 cut(s)	303, 309, 316
Aor13HI	TCCGGA	2 cut(s)	298, 346
Aor51HI	AGCGCT	1 cut(s)	63
AoxI	GGCC	3 cut(s)	137, 146, 208
ApeKI	GCWGC	4 cut(s)	185, 398, 473, 484
AspLEI	GCGC	3 cut(s)	64, 403, 452
AspS9I	GGNCC	4 cut(s)	147, 172, 208, 326
AsuC2I	CCSGG	4 cut(s)	145, 367, 379, 410
AsuHPI	GGTGA	3 cut(s)	42, 153, 258
AvaII	GGWCC	2 cut(s)	172, 326
BamHI	GGATCC	1 cut(s)	308
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	4 cut(s)	197, 385, 460, 471
BccI	CCATC	1 cut(s)	316
BceAI	ACGGC	1 cut(s)	412
BcgI	CGANNNNNNTGC	2 cut(s)	455, 489
BciT130I	CCWGG	2 cut(s)	212, 293
BcnI	CCSGG	4 cut(s)	145, 367, 379, 410
BfoI	RGCGCY	2 cut(s)	65, 453
BglI	GCCNNNNNGGC	1 cut(s)	145
BisI	GCNGC	6 cut(s)	186, 232, 399, 474, 485, 500
BlsI	GCNGC	6 cut(s)	187, 233, 400, 475, 486, 501
Bme1390I	CCNGG	6 cut(s)	145, 212, 293, 367, 379, 410
Bme18I	GGWCC	2 cut(s)	172, 326
BmgT120I	GGNCC	4 cut(s)	147, 172, 208, 326
BmiI	GGNNCC	4 cut(s)	297, 310, 327, 345
BmrFI	CCNGG	6 cut(s)	145, 212, 293, 367, 379, 410
BmrI	ACTGGG	1 cut(s)	367
BmuI	ACTGGG	1 cut(s)	367
Bpu10I	CCTNAGC	1 cut(s)	54
BpuMI	CCSGG	4 cut(s)	145, 367, 379, 410
BsaJI	CCNNGG	2 cut(s)	291, 408
BsaWI	WCCGGW	5 cut(s)	123, 169, 256, 298, 346
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 298, 305, 318
Bse1I	ACTGG	1 cut(s)	362
BseAI	TCCGGA	2 cut(s)	298, 346
BseBI	CCWGG	2 cut(s)	212, 293
BseDI	CCNNGG	2 cut(s)	291, 408
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	4 cut(s)	97, 298, 305, 318
BseMII	CTCAG	2 cut(s)	31, 68
BseNI	ACTGG	1 cut(s)	362
BseXI	GCAGC	4 cut(s)	197, 385, 460, 471
Bsh1236I	CGCG	1 cut(s)	231
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	3 cut(s)	139, 148, 210
BsiEI	CGRYCG	1 cut(s)	124
BslFI	GGGAC	2 cut(s)	6, 400
BslI	CCNNNNNNNGG	4 cut(s)	97, 298, 305, 318
BsmFI	GGGAC	2 cut(s)	6, 400
BsnI	GGCC	3 cut(s)	139, 148, 210
Bsp13I	TCCGGA	2 cut(s)	298, 346
Bsp143I	GATC	2 cut(s)	301, 308
BspACI	CCGC	3 cut(s)	183, 231, 499
BspANI	GGCC	3 cut(s)	139, 148, 210
BspCNI	CTCAG	2 cut(s)	30, 67
BspEI	TCCGGA	2 cut(s)	298, 346
BspFNI	CGCG	1 cut(s)	231
BspLI	GGNNCC	4 cut(s)	297, 310, 327, 345
BspPI	GGATC	3 cut(s)	303, 309, 316
BspQI	GCTCTTC	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	362
BssECI	CCNNGG	2 cut(s)	291, 408
BssMI	GATC	2 cut(s)	301, 308
Bst2UI	CCWGG	2 cut(s)	212, 293
Bst6I	CTCTTC	1 cut(s)	440
BstC8I	GCNNGC	3 cut(s)	60, 478, 482
BstDEI	CTNAG	2 cut(s)	17, 54
BstEII	GGTNACC	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	327
BstFNI	CGCG	1 cut(s)	231
BstH2I	RGCGCY	2 cut(s)	65, 453
BstHHI	GCGC	3 cut(s)	64, 403, 452
BstKTI	GATC	2 cut(s)	304, 311
BstMBI	GATC	2 cut(s)	301, 308
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 490, 499
BstNI	CCWGG	2 cut(s)	212, 293
BstPI	GGTNACC	1 cut(s)	264
BstSCI	CCNGG	6 cut(s)	143, 210, 291, 365, 377, 408
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	4 cut(s)	197, 385, 460, 471
BstX2I	RGATCY	2 cut(s)	301, 308
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstYI	RGATCY	2 cut(s)	301, 308
BsuRI	GGCC	3 cut(s)	139, 148, 210
BtsCI	GGATG	1 cut(s)	327
Cac8I	GCNNGC	3 cut(s)	60, 478, 482
CfoI	GCGC	3 cut(s)	64, 403, 452
Cfr13I	GGNCC	4 cut(s)	147, 172, 208, 326
CviAII	CATG	1 cut(s)	205
DdeI	CTNAG	2 cut(s)	17, 54
DpnI	GATC	2 cut(s)	303, 310
DpnII	GATC	2 cut(s)	301, 308
Eam1104I	CTCTTC	1 cut(s)	440
EarI	CTCTTC	1 cut(s)	440
Eco47I	GGWCC	2 cut(s)	172, 326
Eco47III	AGCGCT	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	509
Eco91I	GGTNACC	1 cut(s)	264
EcoO109I	RGGNCCY	1 cut(s)	326
EcoO65I	GGTNACC	1 cut(s)	264
EcoRII	CCWGG	2 cut(s)	210, 291
FaeI	CATG	1 cut(s)	208
FaiI	YATR	2 cut(s)	206, 395
FaqI	GGGAC	2 cut(s)	6, 400
FatI	CATG	1 cut(s)	204
FauI	CCCGC	1 cut(s)	190
Fnu4HI	GCNGC	6 cut(s)	186, 232, 399, 474, 485, 500
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	6 cut(s)	186, 232, 399, 474, 485, 500
GlaI	GCGC	3 cut(s)	63, 402, 451
GluI	GCNGC	6 cut(s)	186, 232, 399, 474, 485, 500
HaeII	RGCGCY	2 cut(s)	65, 453
HaeIII	GGCC	3 cut(s)	139, 148, 210
HhaI	GCGC	3 cut(s)	64, 403, 452
Hin1II	CATG	1 cut(s)	208
Hin6I	GCGC	3 cut(s)	62, 401, 450
HinP1I	GCGC	3 cut(s)	62, 401, 450
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	6 cut(s)	41, 70, 253, 280, 332, 413
HphI	GGTGA	3 cut(s)	42, 153, 258
Hpy188I	TCNGA	2 cut(s)	104, 308
Hpy188III	TCNNGA	4 cut(s)	175, 299, 329, 347
Hpy99I	CGWCG	4 cut(s)	239, 388, 391, 433
HpyAV	CCTTC	3 cut(s)	129, 334, 465
HpyCH4V	TGCA	1 cut(s)	476
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 490, 499
HpyF3I	CTNAG	2 cut(s)	17, 54
Hsp92II	CATG	1 cut(s)	208
HspAI	GCGC	3 cut(s)	62, 401, 450
Kpn2I	TCCGGA	2 cut(s)	298, 346
Kzo9I	GATC	2 cut(s)	301, 308
LguI	GCTCTTC	1 cut(s)	440
Lsp1109I	GCAGC	4 cut(s)	197, 385, 460, 471
MaeIII	GTNAC	1 cut(s)	264
MalI	GATC	2 cut(s)	303, 310
MboI	GATC	2 cut(s)	301, 308
MboII	GAAGA	4 cut(s)	139, 349, 427, 457
MflI	RGATCY	2 cut(s)	301, 308
MluCI	AATT	2 cut(s)	28, 505
MlyI	GAGTC	4 cut(s)	35, 247, 326, 422
MnlI	CCTC	6 cut(s)	44, 63, 118, 175, 414, 432
MroI	TCCGGA	2 cut(s)	298, 346
MspR9I	CCNGG	6 cut(s)	145, 212, 293, 367, 379, 410
MvaI	CCWGG	2 cut(s)	212, 293
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	3 cut(s)	145, 490, 499
NciI	CCSGG	4 cut(s)	145, 367, 379, 410
NdeII	GATC	2 cut(s)	301, 308
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	4 cut(s)	297, 310, 327, 345
NmuCI	GTSAC	1 cut(s)	264
PciSI	GCTCTTC	1 cut(s)	440
PfeI	GAWTC	2 cut(s)	70, 280
PkrI	GCNGC	6 cut(s)	187, 233, 400, 475, 486, 501
PleI	GAGTC	4 cut(s)	35, 247, 326, 421
PpsI	GAGTC	4 cut(s)	35, 247, 326, 421
PpuMI	RGGWCCY	1 cut(s)	326
Psp5II	RGGWCCY	1 cut(s)	326
Psp6I	CCWGG	2 cut(s)	210, 291
PspEI	GGTNACC	1 cut(s)	264
PspGI	CCWGG	2 cut(s)	210, 291
PspN4I	GGNNCC	4 cut(s)	297, 310, 327, 345
PspPI	GGNCC	4 cut(s)	147, 172, 208, 326
PspPPI	RGGWCCY	1 cut(s)	326
PsuI	RGATCY	2 cut(s)	301, 308
SapI	GCTCTTC	1 cut(s)	440
SatI	GCNGC	6 cut(s)	186, 232, 399, 474, 485, 500
Sau3AI	GATC	2 cut(s)	301, 308
Sau96I	GGNCC	4 cut(s)	147, 172, 208, 326
SchI	GAGTC	4 cut(s)	35, 247, 326, 422
ScrFI	CCNGG	6 cut(s)	145, 212, 293, 367, 379, 410
SetI	ASST	9 cut(s)	55, 110, 216, 297, 345, 400, 424, 475, 495
SfiI	GGCCNNNNNGGCC	1 cut(s)	145
SinI	GGWCC	2 cut(s)	172, 326
Sse9I	AATT	2 cut(s)	28, 505
SsiI	CCGC	3 cut(s)	183, 231, 499
StyD4I	CCNGG	6 cut(s)	143, 210, 291, 365, 377, 408
TaqI	TCGA	2 cut(s)	79, 335
TaqII	GACCGA	1 cut(s)	252
TasI	AATT	2 cut(s)	28, 505
TauI	GCSGC	2 cut(s)	234, 502
TfiI	GAWTC	2 cut(s)	70, 280
TseFI	GTSAC	1 cut(s)	264
TseI	GCWGC	4 cut(s)	185, 398, 473, 484
Tsp45I	GTSAC	1 cut(s)	264
TspDTI	ATGAA	2 cut(s)	83, 483
TspGWI	ACGGA	1 cut(s)	367
VpaK11BI	GGWCC	2 cut(s)	172, 326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.