Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005989

Physical Location & Seq

Genomic Coordinates Forward (+)

22228915 .. 22230190

Gene Structure 1276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g28260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGTTGTCGAAGTTCTCAGCCCACAAGACTGCCTCAAACACCCTTCATCTCACGGTCTCCTCTCTCTTCCGATGAAGTACCACCACCGCAACCCTACCCCTAACAAGGCCGCTCGTCCCCAGCCCGACCGCCGCAAGCCGCAGCGCAAGCCGGCCTCCCCGGTCCAGAAAGCTCCTGTTCCCCTCCTCACCGGCTCGATCAAAATCCTCAAGCGCGGCGAAGAGCTCCCCAAGCCGGAGGAGCTCCCGAAAGCCAAGGAGGAGCTCCCACCAGCCAAGGAGAATCGCTCCCCTCCGAAACAGAACCAGAAGGTTCCAGATCTCGGATCTACAGTTTTTTCGGGTCCGAAAAACCCGAAGAAGGGTCCGAAGAAGCAGACCCGTCTCGCTGACCCGGTTAACCCTGCTCTCGGGTTCTACGCCGGGCCGTCCTCCTCTATAGCCTCCCCTCCTCCGAGCTCACTCCCACTTCCTTCCTTCTTCGCAAAGAAGGGGGCGGTGGTTTCGAACATCGATGAAGCCGCCAGCAATATACTCAAGCTTTGCCTTAATTTATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

187

Amino Acids

20.08

Weight (kDa)

10.08

Isoelectric Point (pI)

73.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25250 AT4G32020
fragaria_vesca	FvH4_1g16040 FvH4_2g28260 FvH4_6g47730 FvH4_7g22490 FvH4_7g24010
malus_domestica	MD15G1131400.v1.1
prunus_persica	Prupe.1G486700_v2.0.a1 Prupe.1G486800_v2.0.a1
pyrus_communis	pycom08g13360 pycom15g11860
rosa_chinensis	RchiOBHm_Chr6g0297171
rosa_laevigata	RLG00000011625 RLG00000027299
rosa_multiflora	Rmu_co8054888.1_g000001 Rmu_sc0001574.1_g000004 Rmu_sc0007424.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170820
rosa_rugosa	Rorug01G0334300 Rorug06G0269500
rosa_samantha	Rh6AG380600 Rh6BG388700 Rh6CG394000 Rh6DG380600
rosa_wichuraiana	Rw1G030330 Rw6G033140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	113
AccII	CGCG	1 cut(s)	216
AciI	CCGC	8 cut(s)	88, 111, 130, 133, 140, 216, 497, 522
AclWI	GGATC	1 cut(s)	334
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	6 cut(s)	106, 235, 323, 361, 362, 410
AluBI	AGCT	6 cut(s)	173, 226, 244, 265, 459, 541
AluI	AGCT	6 cut(s)	173, 226, 244, 265, 459, 541
Alw21I	GWGCWC	4 cut(s)	228, 246, 267, 461
Alw26I	GTCTC	2 cut(s)	62, 389
AlwI	GGATC	1 cut(s)	334
Ama87I	CYCGRG	1 cut(s)	410
AoxI	GGCC	3 cut(s)	108, 153, 425
ApeKI	GCWGC	1 cut(s)	142
AspLEI	GCGC	2 cut(s)	147, 216
AspS9I	GGNCC	4 cut(s)	163, 344, 365, 425
AsuC2I	CCSGG	3 cut(s)	161, 395, 424
AsuHPI	GGTGA	1 cut(s)	181
AsuII	TTCGAA	1 cut(s)	506
AvaI	CYCGRG	1 cut(s)	410
AvaII	GGWCC	3 cut(s)	163, 344, 365
BanII	GRGCYC	4 cut(s)	228, 246, 267, 461
Bbv12I	GWGCWC	4 cut(s)	228, 246, 267, 461
BbvI	GCAGC	1 cut(s)	154
BceAI	ACGGC	1 cut(s)	412
BcnI	CCSGG	3 cut(s)	161, 395, 424
BcoDI	GTCTC	2 cut(s)	62, 389
BfmI	CTRYAG	2 cut(s)	330, 438
BglII	AGATCT	1 cut(s)	319
BisI	GCNGC	6 cut(s)	111, 133, 140, 143, 217, 522
BlsI	GCNGC	6 cut(s)	112, 134, 141, 144, 218, 523
Bme1390I	CCNGG	3 cut(s)	161, 395, 424
Bme18I	GGWCC	3 cut(s)	163, 344, 365
BmeT110I	CYCGRG	1 cut(s)	410
BmgT120I	GGNCC	4 cut(s)	163, 344, 365, 425
BmiI	GGNNCC	3 cut(s)	315, 345, 366
BmrFI	CCNGG	3 cut(s)	161, 395, 424
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
Bpu14I	TTCGAA	1 cut(s)	506
BpuEI	CTTGAG	2 cut(s)	194, 521
BpuMI	CCSGG	3 cut(s)	161, 395, 424
Bsa29I	ATCGAT	1 cut(s)	513
BsaBI	GATNNNNATC	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	62
BsaJI	CCNNGG	3 cut(s)	159, 255, 276
Bsc4I	CCNNNNNNNGG	6 cut(s)	106, 235, 323, 361, 362, 410
Bse118I	RCCGGY	2 cut(s)	151, 191
Bse8I	GATNNNNATC	1 cut(s)	203
BseCI	ATCGAT	1 cut(s)	513
BseDI	CCNNGG	3 cut(s)	159, 255, 276
BseJI	GATNNNNATC	1 cut(s)	203
BseLI	CCNNNNNNNGG	6 cut(s)	106, 235, 323, 361, 362, 410
BseMII	CTCAG	1 cut(s)	31
BseRI	GAGGAG	6 cut(s)	50, 176, 254, 275, 424, 441
BseXI	GCAGC	1 cut(s)	154
BseYI	CCCAGC	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	216
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	3 cut(s)	110, 155, 427
BshVI	ATCGAT	1 cut(s)	513
BsiEI	CGRYCG	1 cut(s)	130
BsiHKAI	GWGCWC	4 cut(s)	228, 246, 267, 461
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	6 cut(s)	152, 161, 192, 236, 395, 423
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	6 cut(s)	106, 235, 323, 361, 362, 410
BsmAI	GTCTC	2 cut(s)	62, 389
BsmBI	CGTCTC	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	102
BsnI	GGCC	3 cut(s)	110, 155, 427
Bso31I	GGTCTC	1 cut(s)	62
BsoBI	CYCGRG	1 cut(s)	410
Bsp119I	TTCGAA	1 cut(s)	506
Bsp1286I	GDGCHC	4 cut(s)	228, 246, 267, 461
Bsp143I	GATC	3 cut(s)	198, 319, 326
BspACI	CCGC	8 cut(s)	88, 111, 130, 133, 140, 216, 497, 522
BspANI	GGCC	3 cut(s)	110, 155, 427
BspCNI	CTCAG	1 cut(s)	30
BspDI	ATCGAT	1 cut(s)	513
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	3 cut(s)	315, 345, 366
BspPI	GGATC	1 cut(s)	334
BspQI	GCTCTTC	1 cut(s)	216
BspT104I	TTCGAA	1 cut(s)	506
BspTNI	GGTCTC	1 cut(s)	62
BsrBI	CCGCTC	1 cut(s)	113
BsrFI	RCCGGY	2 cut(s)	151, 191
BssAI	RCCGGY	2 cut(s)	151, 191
BssECI	CCNNGG	3 cut(s)	159, 255, 276
BssMI	GATC	3 cut(s)	198, 319, 326
BssT1I	CCWWGG	2 cut(s)	255, 276
Bst4CI	ACNGT	2 cut(s)	56, 334
Bst6I	CTCTTC	2 cut(s)	72, 216
BstBI	TTCGAA	1 cut(s)	506
BstC8I	GCNNGC	4 cut(s)	137, 149, 153, 526
BstDEI	CTNAG	2 cut(s)	17, 558
BstFNI	CGCG	1 cut(s)	216
BstHHI	GCGC	2 cut(s)	147, 216
BstKTI	GATC	3 cut(s)	201, 322, 329
BstMAI	GTCTC	2 cut(s)	62, 389
BstMBI	GATC	3 cut(s)	198, 319, 326
BstMCI	CGRYCG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 232, 241
BstSCI	CCNGG	3 cut(s)	159, 393, 422
BstSFI	CTRYAG	2 cut(s)	330, 438
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	154
BstX2I	RGATCY	2 cut(s)	319, 326
BstYI	RGATCY	2 cut(s)	319, 326
Bsu15I	ATCGAT	1 cut(s)	513
BsuRI	GGCC	3 cut(s)	110, 155, 427
BsuTUI	ATCGAT	1 cut(s)	513
Cac8I	GCNNGC	4 cut(s)	137, 149, 153, 526
CfoI	GCGC	2 cut(s)	147, 216
Cfr10I	RCCGGY	2 cut(s)	151, 191
Cfr13I	GGNCC	4 cut(s)	163, 344, 365, 425
ClaI	ATCGAT	1 cut(s)	513
Csp6I	GTAC	1 cut(s)	79
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	2 cut(s)	17, 558
DpnI	GATC	3 cut(s)	200, 321, 328
DpnII	GATC	3 cut(s)	198, 319, 326
Eam1104I	CTCTTC	2 cut(s)	72, 216
EarI	CTCTTC	2 cut(s)	72, 216
Ecl136II	GAGCTC	4 cut(s)	226, 244, 265, 459
Eco130I	CCWWGG	2 cut(s)	255, 276
Eco24I	GRGCYC	4 cut(s)	228, 246, 267, 461
Eco31I	GGTCTC	1 cut(s)	62
Eco47I	GGWCC	3 cut(s)	163, 344, 365
Eco53kI	GAGCTC	4 cut(s)	226, 244, 265, 459
Eco88I	CYCGRG	1 cut(s)	410
EcoICRI	GAGCTC	4 cut(s)	226, 244, 265, 459
EcoT14I	CCWWGG	2 cut(s)	255, 276
EcoT38I	GRGCYC	4 cut(s)	228, 246, 267, 461
ErhI	CCWWGG	2 cut(s)	255, 276
Esp3I	CGTCTC	1 cut(s)	389
FaiI	YATR	2 cut(s)	440, 533
FaqI	GGGAC	1 cut(s)	102
Fnu4HI	GCNGC	6 cut(s)	111, 133, 140, 143, 217, 522
FriOI	GRGCYC	4 cut(s)	228, 246, 267, 461
Fsp4HI	GCNGC	6 cut(s)	111, 133, 140, 143, 217, 522
GlaI	GCGC	2 cut(s)	146, 215
GluI	GCNGC	6 cut(s)	111, 133, 140, 143, 217, 522
GsaI	CCCAGC	1 cut(s)	124
HaeIII	GGCC	3 cut(s)	110, 155, 427
HapII	CCGG	6 cut(s)	152, 161, 192, 236, 395, 423
HhaI	GCGC	2 cut(s)	147, 216
Hin6I	GCGC	2 cut(s)	145, 214
HinP1I	GCGC	2 cut(s)	145, 214
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	1 cut(s)	283
HpaI	GTTAAC	1 cut(s)	400
HpaII	CCGG	6 cut(s)	152, 161, 192, 236, 395, 423
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	6 cut(s)	72, 297, 326, 348, 369, 456
Hpy188III	TCNNGA	3 cut(s)	166, 247, 317
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	6 cut(s)	54, 304, 355, 483, 484, 487
HpyCH4III	ACNGT	2 cut(s)	56, 334
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 232, 241
HpyF3I	CTNAG	2 cut(s)	17, 558
HspAI	GCGC	2 cut(s)	145, 214
KroI	GCCGGC	1 cut(s)	151
KroNI	GCCGGC	1 cut(s)	153
KspAI	GTTAAC	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	198, 319, 326
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	7 cut(s)	178, 231, 241, 249, 262, 270, 293
Lsp1109I	GCAGC	1 cut(s)	154
MalI	GATC	3 cut(s)	200, 321, 328
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	3 cut(s)	198, 319, 326
MboII	GAAGA	5 cut(s)	59, 233, 370, 382, 472
MflI	RGATCY	2 cut(s)	319, 326
MhlI	GDGCHC	4 cut(s)	228, 246, 267, 461
MluCI	AATT	1 cut(s)	550
MroNI	GCCGGC	1 cut(s)	151
MseI	TTAA	2 cut(s)	399, 549
MspI	CCGG	6 cut(s)	152, 161, 192, 236, 395, 423
MspR9I	CCNGG	3 cut(s)	161, 395, 424
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	3 cut(s)	148, 232, 241
NaeI	GCCGGC	1 cut(s)	153
NciI	CCSGG	3 cut(s)	161, 395, 424
NdeII	GATC	3 cut(s)	198, 319, 326
NgoMIV	GCCGGC	1 cut(s)	151
NlaIV	GGNNCC	3 cut(s)	315, 345, 366
NspV	TTCGAA	1 cut(s)	506
PciSI	GCTCTTC	1 cut(s)	216
PdiI	GCCGGC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	283
PkrI	GCNGC	6 cut(s)	112, 134, 141, 144, 218, 523
Psp124BI	GAGCTC	4 cut(s)	228, 246, 267, 461
PspFI	CCCAGC	1 cut(s)	120
PspN4I	GGNNCC	3 cut(s)	315, 345, 366
PspPI	GGNCC	4 cut(s)	163, 344, 365, 425
PsuI	RGATCY	2 cut(s)	319, 326
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SacI	GAGCTC	4 cut(s)	228, 246, 267, 461
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	399, 549
SatI	GCNGC	6 cut(s)	111, 133, 140, 143, 217, 522
Sau3AI	GATC	3 cut(s)	198, 319, 326
Sau96I	GGNCC	4 cut(s)	163, 344, 365, 425
ScrFI	CCNGG	3 cut(s)	161, 395, 424
SduI	GDGCHC	4 cut(s)	228, 246, 267, 461
SetI	ASST	7 cut(s)	175, 228, 246, 267, 315, 461, 543
SfcI	CTRYAG	2 cut(s)	330, 438
SfuI	TTCGAA	1 cut(s)	506
SinI	GGWCC	3 cut(s)	163, 344, 365
SmlI	CTYRAG	2 cut(s)	209, 536
SmoI	CTYRAG	2 cut(s)	209, 536
Sse9I	AATT	1 cut(s)	550
SsiI	CCGC	8 cut(s)	88, 111, 130, 133, 140, 216, 497, 522
SstI	GAGCTC	4 cut(s)	228, 246, 267, 461
StyD4I	CCNGG	3 cut(s)	159, 393, 422
StyI	CCWWGG	2 cut(s)	255, 276
TaaI	ACNGT	2 cut(s)	56, 334
TaqI	TCGA	4 cut(s)	9, 197, 506, 513
TasI	AATT	1 cut(s)	550
TauI	GCSGC	5 cut(s)	113, 135, 142, 219, 524
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	2 cut(s)	399, 549
Tru9I	TTAA	2 cut(s)	399, 549
TseI	GCWGC	1 cut(s)	142
TspDTI	ATGAA	3 cut(s)	36, 89, 531
VpaK11BI	GGWCC	3 cut(s)	163, 344, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.