Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005989

Physical Location & Seq

Genomic Coordinates Reverse (-)

9112260 .. 9113070

Gene Structure 811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g16040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGTTGTCGAAGTTCTCAGCCCACAAGACTGCCTCAAACACCCTTCATCTCACGGTCTCCTCTCTCTTCTGATGAAGTACCACCACCGCAACCCTACCCCTAACAAGGCCGCCCGTCCCCAGCCTAACCGGCGCAAGCCGCAGCCCAAGCCGGCCTCTCCGATCCAGAAAGCTCTTGTTCCCCTCCTCACTGGCCCTGTCAAAATCCTCAAGCGCGGCGAAGACCTCCCCAAGCCGGAGGAGCTCCCGAAAGCCAAGGAGAATTGCTCCCCTCCGAAACAGAACCAGAAGGTTCCAGATCTCGGATCTACAGTTTTTTCGGGTCCGAAAAACCCGAAGAAGAGTTTGAAGTTGTTTTGGATGTTAAAATTGCAATGGAATCAAAAGGATAAATTTCAGATTGTTTTCCTAGTTCTACCAAACACCAGAAAGGAAAATGGAAAGGAGTTGCAATTTTCCATGGGAAAGGAAAATTTAAGGAACAGATTTACTTTCCTTTCCTTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

170

Amino Acids

19.33

Weight (kDa)

10.3

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25250 AT4G32020
fragaria_vesca	FvH4_1g16040 FvH4_2g28260 FvH4_6g47730 FvH4_7g22490 FvH4_7g24010
malus_domestica	MD15G1131400.v1.1
prunus_persica	Prupe.1G486700_v2.0.a1 Prupe.1G486800_v2.0.a1
pyrus_communis	pycom08g13360 pycom15g11860
rosa_chinensis	RchiOBHm_Chr6g0297171
rosa_laevigata	RLG00000011625 RLG00000027299
rosa_multiflora	Rmu_co8054888.1_g000001 Rmu_sc0001574.1_g000004 Rmu_sc0007424.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170820
rosa_rugosa	Rorug01G0334300 Rorug06G0269500
rosa_samantha	Rh6AG380600 Rh6BG388700 Rh6CG394000 Rh6DG380600
rosa_wichuraiana	Rw1G030330 Rw6G033140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	216
AciI	CCGC	4 cut(s)	88, 111, 140, 216
AclWI	GGATC	2 cut(s)	157, 313
AcsI	RAATTY	2 cut(s)	392, 472
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	3 cut(s)	106, 235, 302
AgsI	TTSAA	1 cut(s)	349
AluBI	AGCT	2 cut(s)	173, 244
AluI	AGCT	2 cut(s)	173, 244
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	2 cut(s)	157, 313
AoxI	GGCC	3 cut(s)	108, 153, 193
ApeKI	GCWGC	1 cut(s)	142
ApoI	RAATTY	2 cut(s)	392, 472
AspLEI	GCGC	2 cut(s)	135, 216
AspS9I	GGNCC	2 cut(s)	194, 323
AvaII	GGWCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	1 cut(s)	410
BfmI	CTRYAG	1 cut(s)	309
BglI	GCCNNNNNGGC	1 cut(s)	130
BglII	AGATCT	1 cut(s)	298
BisI	GCNGC	4 cut(s)	111, 140, 143, 217
BlsI	GCNGC	4 cut(s)	112, 141, 144, 218
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	2 cut(s)	194, 323
BmiI	GGNNCC	2 cut(s)	294, 324
BpiI	GAAGAC	1 cut(s)	228
BplI	GAGNNNNNCTC	2 cut(s)	251, 283
BpuEI	CTTGAG	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	62
BsaJI	CCNNGG	2 cut(s)	255, 459
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 235, 302
Bse118I	RCCGGY	2 cut(s)	129, 151
Bse1I	ACTGG	1 cut(s)	196
Bse3DI	GCAATG	1 cut(s)	380
BseDI	CCNNGG	2 cut(s)	255, 459
BseGI	GGATG	1 cut(s)	366
BseLI	CCNNNNNNNGG	3 cut(s)	106, 235, 302
BseMI	GCAATG	1 cut(s)	380
BseMII	CTCAG	1 cut(s)	31
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	3 cut(s)	50, 176, 254
BseXI	GCAGC	1 cut(s)	154
BseYI	CCCAGC	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	216
BshFI	GGCC	3 cut(s)	110, 155, 195
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	3 cut(s)	130, 152, 236
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	3 cut(s)	106, 235, 302
BsmAI	GTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	102
BsnI	GGCC	3 cut(s)	110, 155, 195
Bso31I	GGTCTC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	3 cut(s)	162, 298, 305
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	4 cut(s)	88, 111, 140, 216
BspANI	GGCC	3 cut(s)	110, 155, 195
BspCNI	CTCAG	1 cut(s)	30
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	2 cut(s)	294, 324
BspPI	GGATC	2 cut(s)	157, 313
BspTNI	GGTCTC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	380
BsrFI	RCCGGY	2 cut(s)	129, 151
BsrI	ACTGG	1 cut(s)	196
BssAI	RCCGGY	2 cut(s)	129, 151
BssECI	CCNNGG	2 cut(s)	255, 459
BssMI	GATC	3 cut(s)	162, 298, 305
BssT1I	CCWWGG	2 cut(s)	255, 459
Bst4CI	ACNGT	2 cut(s)	56, 313
Bst6I	CTCTTC	2 cut(s)	72, 335
BstC8I	GCNNGC	2 cut(s)	137, 153
BstDEI	CTNAG	1 cut(s)	17
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	366
BstFNI	CGCG	1 cut(s)	216
BstHHI	GCGC	2 cut(s)	135, 216
BstKTI	GATC	3 cut(s)	165, 301, 308
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	3 cut(s)	162, 298, 305
BstMWI	GCNNNNNNNGC	4 cut(s)	130, 139, 148, 241
BstSFI	CTRYAG	1 cut(s)	309
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	154
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	2 cut(s)	298, 305
BstYI	RGATCY	2 cut(s)	298, 305
BsuRI	GGCC	3 cut(s)	110, 155, 195
BtgI	CCRYGG	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	366
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	2 cut(s)	137, 153
CfoI	GCGC	2 cut(s)	135, 216
Cfr10I	RCCGGY	2 cut(s)	129, 151
Cfr13I	GGNCC	2 cut(s)	194, 323
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	1 cut(s)	460
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	3 cut(s)	164, 300, 307
DpnII	GATC	3 cut(s)	162, 298, 305
Eam1104I	CTCTTC	2 cut(s)	72, 335
EarI	CTCTTC	2 cut(s)	72, 335
Ecl136II	GAGCTC	1 cut(s)	244
Eco130I	CCWWGG	2 cut(s)	255, 459
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	323
Eco53kI	GAGCTC	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	244
EcoT14I	CCWWGG	2 cut(s)	255, 459
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	2 cut(s)	255, 459
FaeI	CATG	1 cut(s)	463
FaiI	YATR	2 cut(s)	461, 508
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	1 cut(s)	459
Fnu4HI	GCNGC	4 cut(s)	111, 140, 143, 217
FokI	GGATG	1 cut(s)	373
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	4 cut(s)	111, 140, 143, 217
FspBI	CTAG	1 cut(s)	410
GlaI	GCGC	2 cut(s)	134, 215
GluI	GCNGC	4 cut(s)	111, 140, 143, 217
GsaI	CCCAGC	1 cut(s)	124
HaeIII	GGCC	3 cut(s)	110, 155, 195
HapII	CCGG	3 cut(s)	130, 152, 236
HhaI	GCGC	2 cut(s)	135, 216
Hin1II	CATG	1 cut(s)	463
Hin6I	GCGC	2 cut(s)	133, 214
HinP1I	GCGC	2 cut(s)	133, 214
HinfI	GANTC	1 cut(s)	379
HpaII	CCGG	3 cut(s)	130, 152, 236
Hpy188I	TCNGA	6 cut(s)	72, 162, 276, 305, 327, 399
Hpy188III	TCNNGA	3 cut(s)	166, 247, 296
HpyAV	CCTTC	2 cut(s)	54, 283
HpyCH4III	ACNGT	2 cut(s)	56, 313
HpyCH4V	TGCA	2 cut(s)	373, 451
HpyF10VI	GCNNNNNNNGC	4 cut(s)	130, 139, 148, 241
HpyF3I	CTNAG	1 cut(s)	17
Hsp92II	CATG	1 cut(s)	463
HspAI	GCGC	2 cut(s)	133, 214
KroI	GCCGGC	1 cut(s)	151
KroNI	GCCGGC	1 cut(s)	153
Kzo9I	GATC	3 cut(s)	162, 298, 305
LmnI	GCTCC	3 cut(s)	241, 249, 272
Lsp1109I	GCAGC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	410
MalI	GATC	3 cut(s)	164, 300, 307
MboI	GATC	3 cut(s)	162, 298, 305
MboII	GAAGA	4 cut(s)	59, 233, 349, 352
MflI	RGATCY	2 cut(s)	298, 305
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	5 cut(s)	262, 368, 392, 452, 472
MnlI	CCTC	9 cut(s)	44, 71, 166, 194, 197, 218, 232, 236, 282
MroNI	GCCGGC	1 cut(s)	151
MseI	TTAA	2 cut(s)	365, 476
MspI	CCGG	3 cut(s)	130, 152, 236
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	4 cut(s)	130, 139, 148, 241
NaeI	GCCGGC	1 cut(s)	153
NcoI	CCATGG	1 cut(s)	459
NdeII	GATC	3 cut(s)	162, 298, 305
NgoMIV	GCCGGC	1 cut(s)	151
NlaIII	CATG	1 cut(s)	463
NlaIV	GGNNCC	2 cut(s)	294, 324
PdiI	GCCGGC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	4 cut(s)	112, 141, 144, 218
Psp124BI	GAGCTC	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	294, 324
PspPI	GGNCC	2 cut(s)	194, 323
PsuI	RGATCY	2 cut(s)	298, 305
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	365, 476
SatI	GCNGC	4 cut(s)	111, 140, 143, 217
Sau3AI	GATC	3 cut(s)	162, 298, 305
Sau96I	GGNCC	2 cut(s)	194, 323
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	4 cut(s)	175, 228, 246, 294
SfcI	CTRYAG	1 cut(s)	309
SinI	GGWCC	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	5 cut(s)	262, 368, 392, 452, 472
SsiI	CCGC	4 cut(s)	88, 111, 140, 216
SspMI	CTAG	1 cut(s)	410
SstI	GAGCTC	1 cut(s)	246
StyI	CCWWGG	2 cut(s)	255, 459
TaaI	ACNGT	2 cut(s)	56, 313
TaqI	TCGA	1 cut(s)	9
TasI	AATT	5 cut(s)	262, 368, 392, 452, 472
TauI	GCSGC	3 cut(s)	113, 142, 219
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	2 cut(s)	365, 476
Tru9I	TTAA	2 cut(s)	365, 476
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	36, 89
TspRI	CASTG	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	323
XapI	RAATTY	2 cut(s)	392, 472
XspI	CTAG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.