Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005989

Physical Location & Seq

Genomic Coordinates Reverse (-)

10430406 .. 10430909

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027299

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCTTCTTCAACTTCTCAGTCCGCAACATTGCCTCAGAAACCCTCTCACCTCACGACAAGCTCCACTCCCTCCTTTGATAAAATATCCACCTAAACCTAACCCTAAACCTAACCATAAGCCTAACCCTAACCAGGCCATCCGTGCCCAGCCCGACTGTCAAAAGAAGCGGAAGCCAAGCCGGTCAAACGACACCAACTCTCTGCCGGCAAGATCCGATTTCCAGAAAATTCATGTGGTCAATGACCAGCTGAGTGGTCAGGTCAAAATCTTGAAGCGCGGTGAGGGACTGACCAAACCTGCAGCTCCGCAACAGCCATCACCGGCTCCTAAAAAGAAACGCCCATCTCAGAAAGTTCAAGAACTCAGGTTCTACGCGGGGTCGTGCACCTCTAGCGCCTCCCCGCCTCCAAGTTCGCTTCCTCTTCCATCGTTTCTTGCTAAGAAGAGAGTGGTTTCAAACACCGGGGAAGTGCAAGGAGTTGCTAAAGCTTCTACGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

168

Amino Acids

18.2

Weight (kDa)

10.69

Isoelectric Point (pI)

73.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25250 AT4G32020
fragaria_vesca	FvH4_1g16040 FvH4_2g28260 FvH4_6g47730 FvH4_7g22490 FvH4_7g24010
malus_domestica	MD15G1131400.v1.1
prunus_persica	Prupe.1G486700_v2.0.a1 Prupe.1G486800_v2.0.a1
pyrus_communis	pycom08g13360 pycom15g11860
rosa_chinensis	RchiOBHm_Chr6g0297171
rosa_laevigata	RLG00000011625 RLG00000027299
rosa_multiflora	Rmu_co8054888.1_g000001 Rmu_sc0001574.1_g000004 Rmu_sc0007424.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170820
rosa_rugosa	Rorug01G0334300 Rorug06G0269500
rosa_samantha	Rh6AG380600 Rh6BG388700 Rh6CG394000 Rh6DG380600
rosa_wichuraiana	Rw1G030330 Rw6G033140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	307
AccII	CGCG	2 cut(s)	279, 377
AciI	CCGC	6 cut(s)	23, 169, 279, 308, 377, 404
AclWI	GGATC	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	4 cut(s)	11, 274, 359, 459
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	4 cut(s)	62, 250, 305, 491
AluI	AGCT	4 cut(s)	62, 250, 305, 491
Alw21I	GWGCWC	1 cut(s)	389
Alw44I	GTGCAC	1 cut(s)	385
AlwI	GGATC	1 cut(s)	207
AoxI	GGCC	1 cut(s)	135
ApaLI	GTGCAC	1 cut(s)	385
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	228
AspLEI	GCGC	2 cut(s)	279, 398
AsuC2I	CCSGG	1 cut(s)	466
AsuHPI	GGTGA	3 cut(s)	40, 293, 312
BaeGI	GKGCMC	2 cut(s)	148, 389
Bbv12I	GWGCWC	1 cut(s)	389
BbvI	GCAGC	1 cut(s)	314
BccI	CCATC	4 cut(s)	146, 325, 352, 436
BciT130I	CCWGG	1 cut(s)	134
BcnI	CCSGG	1 cut(s)	466
BfaI	CTAG	1 cut(s)	393
BfmI	CTRYAG	1 cut(s)	300
BfoI	RGCGCY	1 cut(s)	399
BfuAI	ACCTGC	1 cut(s)	307
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	2 cut(s)	134, 466
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	2 cut(s)	134, 466
BpuMI	CCSGG	1 cut(s)	466
BsaJI	CCNNGG	1 cut(s)	465
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse118I	RCCGGY	3 cut(s)	180, 205, 322
Bse3DI	GCAATG	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	465
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMI	GCAATG	1 cut(s)	28
BseMII	CTCAG	5 cut(s)	31, 49, 242, 362, 379
BseSI	GKGCMC	2 cut(s)	148, 389
BseXI	GCAGC	1 cut(s)	314
BseYI	CCCAGC	1 cut(s)	147
Bsh1236I	CGCG	2 cut(s)	279, 377
BshFI	GGCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	389
BsiSI	CCGG	4 cut(s)	181, 206, 323, 465
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	300
BsnI	GGCC	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	148, 389
Bsp143I	GATC	1 cut(s)	212
BspACI	CCGC	6 cut(s)	23, 169, 279, 308, 377, 404
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	5 cut(s)	30, 48, 243, 361, 378
BspFNI	CGCG	2 cut(s)	279, 377
BspLI	GGNNCC	1 cut(s)	327
BspMAI	CTGCAG	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	307
BspPI	GGATC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	28
BsrFI	RCCGGY	3 cut(s)	180, 205, 322
BssAI	RCCGGY	3 cut(s)	180, 205, 322
BssECI	CCNNGG	1 cut(s)	465
BssMI	GATC	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	2 cut(s)	429, 440
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	6 cut(s)	17, 35, 251, 348, 365, 441
BstF5I	GGATG	1 cut(s)	138
BstFNI	CGCG	2 cut(s)	279, 377
BstH2I	RGCGCY	1 cut(s)	399
BstHHI	GCGC	2 cut(s)	279, 398
BstKTI	GATC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 393, 497
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	2 cut(s)	132, 464
BstSFI	CTRYAG	1 cut(s)	300
BstSLI	GKGCMC	2 cut(s)	148, 389
BstUI	CGCG	2 cut(s)	279, 377
BstV1I	GCAGC	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	212
BstXI	CCANNNNNNTGG	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	138
BveI	ACCTGC	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	207
CfoI	GCGC	2 cut(s)	279, 398
Cfr10I	RCCGGY	3 cut(s)	180, 205, 322
CviAII	CATG	1 cut(s)	233
DdeI	CTNAG	6 cut(s)	17, 35, 251, 348, 365, 441
DpnI	GATC	1 cut(s)	214
DpnII	GATC	1 cut(s)	212
Eam1104I	CTCTTC	2 cut(s)	429, 440
EarI	CTCTTC	2 cut(s)	429, 440
EcoRII	CCWGG	1 cut(s)	132
FaeI	CATG	1 cut(s)	236
FaiI	YATR	2 cut(s)	117, 234
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	1 cut(s)	232
FauI	CCCGC	2 cut(s)	370, 411
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	1 cut(s)	393
GlaI	GCGC	2 cut(s)	278, 397
GluI	GCNGC	1 cut(s)	303
GsaI	CCCAGC	1 cut(s)	151
HaeII	RGCGCY	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	4 cut(s)	181, 206, 323, 465
HhaI	GCGC	2 cut(s)	279, 398
Hin1II	CATG	1 cut(s)	236
Hin6I	GCGC	2 cut(s)	277, 396
HinP1I	GCGC	2 cut(s)	277, 396
HindIII	AAGCTT	1 cut(s)	489
HpaII	CCGG	4 cut(s)	181, 206, 323, 465
HphI	GGTGA	3 cut(s)	40, 293, 312
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188I	TCNGA	3 cut(s)	38, 217, 351
Hpy188III	TCNNGA	4 cut(s)	54, 223, 271, 359
Hpy8I	GTNNAC	1 cut(s)	387
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	3 cut(s)	302, 387, 475
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 393, 497
HpyF3I	CTNAG	6 cut(s)	17, 35, 251, 348, 365, 441
Hsp92II	CATG	1 cut(s)	236
HspAI	GCGC	2 cut(s)	277, 396
KroI	GCCGGC	1 cut(s)	205
KroNI	GCCGGC	1 cut(s)	207
Kzo9I	GATC	1 cut(s)	212
LmnI	GCTCC	3 cut(s)	67, 310, 331
Lsp1109I	GCAGC	1 cut(s)	314
MaeI	CTAG	1 cut(s)	393
MalI	GATC	1 cut(s)	214
MboI	GATC	1 cut(s)	212
MboII	GAAGA	2 cut(s)	416, 457
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	2 cut(s)	148, 389
MluCI	AATT	1 cut(s)	228
MnlI	CCTC	9 cut(s)	44, 54, 61, 81, 277, 400, 409, 417, 432
MroNI	GCCGGC	1 cut(s)	205
MseI	TTAA	1 cut(s)	502
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	4 cut(s)	181, 206, 323, 465
MspR9I	CCNGG	2 cut(s)	134, 466
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	2 cut(s)	279, 377
MwoI	GCNNNNNNNGC	3 cut(s)	143, 393, 497
NaeI	GCCGGC	1 cut(s)	207
NciI	CCSGG	1 cut(s)	466
NdeII	GATC	1 cut(s)	212
NgoMIV	GCCGGC	1 cut(s)	205
NlaIII	CATG	1 cut(s)	236
NlaIV	GGNNCC	1 cut(s)	327
PdiI	GCCGGC	1 cut(s)	207
PkrI	GCNGC	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	132
PspFI	CCCAGC	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	327
PstI	CTGCAG	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	250
SaqAI	TTAA	1 cut(s)	502
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	1 cut(s)	212
ScrFI	CCNGG	2 cut(s)	134, 466
SduI	GDGCHC	2 cut(s)	148, 389
SfcI	CTRYAG	1 cut(s)	300
Sse9I	AATT	1 cut(s)	228
SsiI	CCGC	6 cut(s)	23, 169, 279, 308, 377, 404
SspMI	CTAG	1 cut(s)	393
StyD4I	CCNGG	2 cut(s)	132, 464
TaaI	ACNGT	1 cut(s)	158
TasI	AATT	1 cut(s)	228
Tru1I	TTAA	1 cut(s)	502
Tru9I	TTAA	1 cut(s)	502
TseI	GCWGC	1 cut(s)	302
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	1 cut(s)	131
VneI	GTGCAC	1 cut(s)	385
XapI	RAATTY	1 cut(s)	228
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.