Rh6BG388700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0005989
Physical Location & Seq
Forward (+)
61727531 .. 61729992
2462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG388700.1

Sequence Viewer

Length: 585 bp
ATGGTTGTTGAAGTTCTCAGTCCACAAGATTGCCTCAAACACCCTTCAAGTGAAGGCCTCCTCTCGCTTCCGATGAAATACCACTCCCGAAACCCTAACCCTACCCCTAACCGGGCCGCCCGTCCCCAGCCCGACCGCCGCAAGCCGCAGCGCAAGCCGGCCCGGCCCAACACCACCACCTCCTCCCCGGTCCAGAAGGCTCCGGTTCCCCAAACCCTCCTCACCGGCCAGGTCAAAATCCTCAAGCGCGGTGAAGAGCTCCCCAAGCCGGAGGAGCTCCCAAAGCCGGCCCCACCACCATCCAAAGAGAATCGCTCACCTCAGAAACAGAACCAGAAAGTTCCAGATCTCGGATGTACAGTTCGTTTGGGTCCGAACCCCAAGAAGGTTCCCAAGCAGACCCGACTCGCTGACCGGGTTAACCCGGCTCTCGGGTTCTACGCCGGGTCGTCATCCTGTATAGCCTCCCCGCCTCCGAGCTCGCTTCCACTTCCGTCTTTCTTCGCAAAGAAGAACGCCGTCGTTTCGAACACCGATGAAGCCGCCAGCGAGTTACTCAAGCTTCTTCGGCTTAATTTATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

194

Amino Acids

21.14

Weight (kDa)

10.26

Isoelectric Point (pI)

72.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 249
AciI CCGC 7 cut(s) 117, 136, 139, 146, 249, 470, 543
AcoI YGGCCR 1 cut(s) 226
AfaI GTAC 1 cut(s) 358
AfiI CCNNNNNNNGG 7 cut(s) 111, 112, 268, 286, 350, 385, 431
AgsI TTSAA 2 cut(s) 11, 48
AjnI CCWGG 1 cut(s) 228
AloI GAACNNNNNNTCC 2 cut(s) 345, 377
AluBI AGCT 4 cut(s) 259, 277, 480, 562
AluI AGCT 4 cut(s) 259, 277, 480, 562
Alw21I GWGCWC 3 cut(s) 261, 279, 482
Ama87I CYCGRG 1 cut(s) 431
AoxI GGCC 6 cut(s) 55, 114, 159, 164, 226, 288
ApeKI GCWGC 1 cut(s) 148
AspLEI GCGC 2 cut(s) 153, 249
AspS9I GGNCC 6 cut(s) 114, 160, 165, 190, 289, 371
AsuC2I CCSGG 6 cut(s) 113, 163, 188, 416, 425, 445
AsuHPI GGTGA 3 cut(s) 214, 263, 309
AsuII TTCGAA 1 cut(s) 527
AvaI CYCGRG 1 cut(s) 431
AvaII GGWCC 2 cut(s) 190, 371
BanII GRGCYC 3 cut(s) 261, 279, 482
Bbv12I GWGCWC 3 cut(s) 261, 279, 482
BbvI GCAGC 1 cut(s) 160
BccI CCATC 1 cut(s) 307
BceAI ACGGC 1 cut(s) 503
BciT130I CCWGG 1 cut(s) 230
BcnI CCSGG 6 cut(s) 113, 163, 188, 416, 425, 445
BglI GCCNNNNNGGC 1 cut(s) 163
BglII AGATCT 1 cut(s) 346
BisI GCNGC 5 cut(s) 117, 139, 146, 149, 543
BlsI GCNGC 5 cut(s) 118, 140, 147, 150, 544
Bme1390I CCNGG 7 cut(s) 113, 163, 188, 230, 416, 425, 445
Bme18I GGWCC 2 cut(s) 190, 371
BmeT110I CYCGRG 1 cut(s) 431
BmgT120I GGNCC 6 cut(s) 114, 160, 165, 190, 289, 371
BmiI GGNNCC 5 cut(s) 201, 207, 291, 372, 390
BmrFI CCNGG 7 cut(s) 113, 163, 188, 230, 416, 425, 445
BplI GAGNNNNNCTC 2 cut(s) 299, 331
Bpu14I TTCGAA 1 cut(s) 527
BpuEI CTTGAG 2 cut(s) 227, 542
BpuMI CCSGG 6 cut(s) 113, 163, 188, 416, 425, 445
BsaJI CCNNGG 1 cut(s) 186
BsaWI WCCGGW 1 cut(s) 202
Bsc4I CCNNNNNNNGG 7 cut(s) 111, 112, 268, 286, 350, 385, 431
Bse118I RCCGGY 3 cut(s) 157, 224, 286
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 3 cut(s) 299, 359, 452
BseLI CCNNNNNNNGG 7 cut(s) 111, 112, 268, 286, 350, 385, 431
BseMII CTCAG 2 cut(s) 31, 335
BseRI GAGGAG 4 cut(s) 50, 172, 209, 287
BseXI GCAGC 1 cut(s) 160
BseYI CCCAGC 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 249
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 6 cut(s) 57, 116, 161, 166, 228, 290
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 3 cut(s) 261, 279, 482
BsiHKCI CYCGRG 1 cut(s) 431
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 7 cut(s) 111, 112, 268, 286, 350, 385, 431
BsmFI GGGAC 1 cut(s) 108
BsnI GGCC 6 cut(s) 57, 116, 161, 166, 228, 290
BsoBI CYCGRG 1 cut(s) 431
Bsp119I TTCGAA 1 cut(s) 527
Bsp1286I GDGCHC 3 cut(s) 261, 279, 482
Bsp1407I TGTACA 1 cut(s) 356
Bsp143I GATC 1 cut(s) 346
BspACI CCGC 7 cut(s) 117, 136, 139, 146, 249, 470, 543
BspANI GGCC 6 cut(s) 57, 116, 161, 166, 228, 290
BspCNI CTCAG 2 cut(s) 30, 334
BspFNI CGCG 1 cut(s) 249
BspLI GGNNCC 5 cut(s) 201, 207, 291, 372, 390
BspQI GCTCTTC 1 cut(s) 249
BspT104I TTCGAA 1 cut(s) 527
BsrFI RCCGGY 3 cut(s) 157, 224, 286
BsrGI TGTACA 1 cut(s) 356
BssAI RCCGGY 3 cut(s) 157, 224, 286
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 1 cut(s) 346
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 1 cut(s) 249
BstAUI TGTACA 1 cut(s) 356
BstBI TTCGAA 1 cut(s) 527
BstC8I GCNNGC 6 cut(s) 143, 155, 159, 288, 482, 547
BstDEI CTNAG 3 cut(s) 17, 321, 582
BstF5I GGATG 3 cut(s) 299, 359, 452
BstFNI CGCG 1 cut(s) 249
BstHHI GCGC 2 cut(s) 153, 249
BstKTI GATC 1 cut(s) 349
BstMBI GATC 1 cut(s) 346
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 6 cut(s) 154, 163, 265, 274, 283, 568
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 7 cut(s) 111, 161, 186, 228, 414, 423, 443
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 160
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BsuRI GGCC 6 cut(s) 57, 116, 161, 166, 228, 290
BtsCI GGATG 3 cut(s) 299, 359, 452
Cac8I GCNNGC 6 cut(s) 143, 155, 159, 288, 482, 547
CfoI GCGC 2 cut(s) 153, 249
Cfr10I RCCGGY 3 cut(s) 157, 224, 286
Cfr13I GGNCC 6 cut(s) 114, 160, 165, 190, 289, 371
Csp6I GTAC 1 cut(s) 357
CviQI GTAC 1 cut(s) 357
DdeI CTNAG 3 cut(s) 17, 321, 582
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Ecl136II GAGCTC 3 cut(s) 259, 277, 480
Eco147I AGGCCT 1 cut(s) 57
Eco24I GRGCYC 3 cut(s) 261, 279, 482
Eco47I GGWCC 2 cut(s) 190, 371
Eco53kI GAGCTC 3 cut(s) 259, 277, 480
Eco88I CYCGRG 1 cut(s) 431
EcoICRI GAGCTC 3 cut(s) 259, 277, 480
EcoRII CCWGG 1 cut(s) 228
EcoT38I GRGCYC 3 cut(s) 261, 279, 482
FaiI YATR 1 cut(s) 461
FaqI GGGAC 1 cut(s) 108
FauI CCCGC 1 cut(s) 477
Fnu4HI GCNGC 5 cut(s) 117, 139, 146, 149, 543
FokI GGATG 3 cut(s) 286, 366, 439
FriOI GRGCYC 3 cut(s) 261, 279, 482
Fsp4HI GCNGC 5 cut(s) 117, 139, 146, 149, 543
GlaI GCGC 2 cut(s) 152, 248
GluI GCNGC 5 cut(s) 117, 139, 146, 149, 543
GsaI CCCAGC 1 cut(s) 130
HaeIII GGCC 6 cut(s) 57, 116, 161, 166, 228, 290
HhaI GCGC 2 cut(s) 153, 249
Hin6I GCGC 2 cut(s) 151, 247
HinP1I GCGC 2 cut(s) 151, 247
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HindIII AAGCTT 1 cut(s) 560
HinfI GANTC 2 cut(s) 310, 405
HpaI GTTAAC 1 cut(s) 421
HphI GGTGA 3 cut(s) 214, 263, 309
Hpy166II GTNNAC 2 cut(s) 23, 421
Hpy188I TCNGA 5 cut(s) 72, 324, 353, 375, 477
Hpy188III TCNNGA 3 cut(s) 87, 193, 344
Hpy8I GTNNAC 2 cut(s) 23, 421
Hpy99I CGWCG 1 cut(s) 524
HpyAV CCTTC 4 cut(s) 47, 54, 190, 379
HpyCH4III ACNGT 1 cut(s) 361
HpyF10VI GCNNNNNNNGC 6 cut(s) 154, 163, 265, 274, 283, 568
HpyF3I CTNAG 3 cut(s) 17, 321, 582
HspAI GCGC 2 cut(s) 151, 247
KroI GCCGGC 2 cut(s) 157, 286
KroNI GCCGGC 2 cut(s) 159, 288
KspAI GTTAAC 1 cut(s) 421
Kzo9I GATC 1 cut(s) 346
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 4 cut(s) 205, 264, 274, 282
Lsp1109I GCAGC 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 552
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 4 cut(s) 266, 493, 523, 557
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 3 cut(s) 261, 279, 482
MluCI AATT 1 cut(s) 574
MlyI GAGTC 1 cut(s) 399
MroNI GCCGGC 2 cut(s) 157, 286
MseI TTAA 2 cut(s) 420, 573
MspR9I CCNGG 7 cut(s) 113, 163, 188, 230, 416, 425, 445
MvaI CCWGG 1 cut(s) 230
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 6 cut(s) 154, 163, 265, 274, 283, 568
NaeI GCCGGC 2 cut(s) 159, 288
NciI CCSGG 6 cut(s) 113, 163, 188, 416, 425, 445
NdeII GATC 1 cut(s) 346
NgoMIV GCCGGC 2 cut(s) 157, 286
NlaIV GGNNCC 5 cut(s) 201, 207, 291, 372, 390
NspV TTCGAA 1 cut(s) 527
PceI AGGCCT 1 cut(s) 57
PciSI GCTCTTC 1 cut(s) 249
PdiI GCCGGC 2 cut(s) 159, 288
PfeI GAWTC 1 cut(s) 310
PkrI GCNGC 5 cut(s) 118, 140, 147, 150, 544
PleI GAGTC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 399
Psp124BI GAGCTC 3 cut(s) 261, 279, 482
Psp6I CCWGG 1 cut(s) 228
PspFI CCCAGC 1 cut(s) 126
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 5 cut(s) 201, 207, 291, 372, 390
PspPI GGNCC 6 cut(s) 114, 160, 165, 190, 289, 371
PsuI RGATCY 1 cut(s) 346
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
SacI GAGCTC 3 cut(s) 261, 279, 482
SapI GCTCTTC 1 cut(s) 249
SaqAI TTAA 2 cut(s) 420, 573
SatI GCNGC 5 cut(s) 117, 139, 146, 149, 543
Sau3AI GATC 1 cut(s) 346
Sau96I GGNCC 6 cut(s) 114, 160, 165, 190, 289, 371
SchI GAGTC 1 cut(s) 399
ScrFI CCNGG 7 cut(s) 113, 163, 188, 230, 416, 425, 445
SduI GDGCHC 3 cut(s) 261, 279, 482
SetI ASST 8 cut(s) 182, 234, 261, 279, 322, 390, 482, 564
SfuI TTCGAA 1 cut(s) 527
SinI GGWCC 2 cut(s) 190, 371
SmlI CTYRAG 2 cut(s) 242, 557
SmoI CTYRAG 2 cut(s) 242, 557
Sse9I AATT 1 cut(s) 574
SseBI AGGCCT 1 cut(s) 57
SsiI CCGC 7 cut(s) 117, 136, 139, 146, 249, 470, 543
SstI GAGCTC 3 cut(s) 261, 279, 482
StuI AGGCCT 1 cut(s) 57
StyD4I CCNGG 7 cut(s) 111, 161, 186, 228, 414, 423, 443
TaaI ACNGT 1 cut(s) 361
TaqI TCGA 1 cut(s) 527
TasI AATT 1 cut(s) 574
TatI WGTACW 1 cut(s) 356
TauI GCSGC 4 cut(s) 119, 141, 148, 545
TfiI GAWTC 1 cut(s) 310
Tru1I TTAA 2 cut(s) 420, 573
Tru9I TTAA 2 cut(s) 420, 573
TseI GCWGC 1 cut(s) 148
TspDTI ATGAA 2 cut(s) 89, 552
TspGWI ACGGA 1 cut(s) 483
VpaK11BI GGWCC 2 cut(s) 190, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.