Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005989

Physical Location & Seq

Genomic Coordinates Forward (+)

17694377 .. 17694916

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g22490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCGGTTCAAGTTCTCAGTCCGCAAAATTGCCTCAACAACCCTTTAACCTCTCGACAAGCCTCACTCTCTCCTTTTATGAAATATTCACCTAAACCTAACCGTAACCCTAGCCCTAACAACAAGCCTAGCCCTAACCCTAGCTCCAACAACAAGCCTAACCCTAGCACAAACCAGGCCATCCGTAACCAGCCCAACTGTCAAAAGCCGCGGAAGTCAAGCCGATCAAACAACACCAACTCTGTGCCGGCCATCTCCGCAGTCCAGAAACTTACTGCGGCCAATAACCAGCTGACTGGTCAGGTCAAAATCCTCAAGCGCGGTAAGAAACTGACCAAACCTGGGGGGCGGCATCAGCCATCTCCCACTCTTAAAAAGAAACGCCCGTGTCCTCAGAAAGATCAAGAACACAGGTTCTATGCCGGCTCGTGCACTTCTATTTTCTCCCCGCCTCCAAGTTCCCTTCCTATGCCATCGTTTCTTGCTAAGAAGACAGTGGTTTCAAACGCCGAGGATGCGCAAGGAGTTGCTATAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

180

Amino Acids

19.37

Weight (kDa)

10.84

Isoelectric Point (pI)

66.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25250 AT4G32020
fragaria_vesca	FvH4_1g16040 FvH4_2g28260 FvH4_6g47730 FvH4_7g22490 FvH4_7g24010
malus_domestica	MD15G1131400.v1.1
prunus_persica	Prupe.1G486700_v2.0.a1 Prupe.1G486800_v2.0.a1
pyrus_communis	pycom08g13360 pycom15g11860
rosa_chinensis	RchiOBHm_Chr6g0297171
rosa_laevigata	RLG00000011625 RLG00000027299
rosa_multiflora	Rmu_co8054888.1_g000001 Rmu_sc0001574.1_g000004 Rmu_sc0007424.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170820
rosa_rugosa	Rorug01G0334300 Rorug06G0269500
rosa_samantha	Rh6AG380600 Rh6BG388700 Rh6CG394000 Rh6DG380600
rosa_wichuraiana	Rw1G030330 Rw6G033140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	519
AccII	CGCG	2 cut(s)	211, 321
AciI	CCGC	9 cut(s)	5, 23, 209, 211, 258, 278, 321, 349, 449
AcoI	YGGCCR	2 cut(s)	249, 279
AfiI	CCNNNNNNNGG	1 cut(s)	342
AgsI	TTSAA	2 cut(s)	11, 504
AjnI	CCWGG	2 cut(s)	174, 340
AluBI	AGCT	3 cut(s)	144, 292, 536
AluI	AGCT	3 cut(s)	144, 292, 536
Alw21I	GWGCWC	1 cut(s)	434
Alw44I	GTGCAC	1 cut(s)	430
AoxI	GGCC	3 cut(s)	177, 249, 279
ApaLI	GTGCAC	1 cut(s)	430
AspLEI	GCGC	2 cut(s)	321, 520
AsuHPI	GGTGA	1 cut(s)	81
BaeGI	GKGCMC	1 cut(s)	434
BauI	CACGAG	1 cut(s)	427
BbsI	GAAGAC	1 cut(s)	497
Bbv12I	GWGCWC	1 cut(s)	434
BccI	CCATC	4 cut(s)	188, 260, 367, 481
BciT130I	CCWGG	2 cut(s)	176, 342
BfaI	CTAG	4 cut(s)	111, 129, 141, 165
BfmI	CTRYAG	1 cut(s)	531
BisI	GCNGC	3 cut(s)	209, 279, 350
BlsI	GCNGC	3 cut(s)	210, 280, 351
Bme1390I	CCNGG	2 cut(s)	176, 342
BmrFI	CCNGG	2 cut(s)	176, 342
BmsI	GCATC	2 cut(s)	361, 505
BpiI	GAAGAC	1 cut(s)	497
BpuEI	CTTGAG	1 cut(s)	299
BsaJI	CCNNGG	3 cut(s)	209, 341, 510
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse118I	RCCGGY	2 cut(s)	247, 422
Bse1I	ACTGG	1 cut(s)	301
BseBI	CCWGG	2 cut(s)	176, 342
BseDI	CCNNGG	3 cut(s)	209, 341, 510
BseGI	GGATG	2 cut(s)	180, 520
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	31, 407
BseNI	ACTGG	1 cut(s)	301
BseSI	GKGCMC	1 cut(s)	434
Bsh1236I	CGCG	2 cut(s)	211, 321
BshFI	GGCC	3 cut(s)	179, 251, 281
BsiHKAI	GWGCWC	1 cut(s)	434
BsiSI	CCGG	2 cut(s)	248, 423
BslI	CCNNNNNNNGG	1 cut(s)	342
BsnI	GGCC	3 cut(s)	179, 251, 281
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp143I	GATC	2 cut(s)	224, 400
BspACI	CCGC	9 cut(s)	5, 23, 209, 211, 258, 278, 321, 349, 449
BspANI	GGCC	3 cut(s)	179, 251, 281
BspCNI	CTCAG	2 cut(s)	30, 406
BspFNI	CGCG	2 cut(s)	211, 321
BsrFI	RCCGGY	2 cut(s)	247, 422
BsrI	ACTGG	1 cut(s)	301
BssAI	RCCGGY	2 cut(s)	247, 422
BssECI	CCNNGG	3 cut(s)	209, 341, 510
BssMI	GATC	2 cut(s)	224, 400
BssSI	CACGAG	1 cut(s)	427
Bst2BI	CACGAG	1 cut(s)	427
Bst2UI	CCWGG	2 cut(s)	176, 342
Bst4CI	ACNGT	3 cut(s)	104, 200, 496
BstC8I	GCNNGC	2 cut(s)	249, 424
BstDEI	CTNAG	3 cut(s)	17, 393, 486
BstDSI	CCRYGG	1 cut(s)	209
BstF5I	GGATG	2 cut(s)	180, 520
BstFNI	CGCG	2 cut(s)	211, 321
BstHHI	GCGC	2 cut(s)	321, 520
BstKTI	GATC	2 cut(s)	227, 403
BstMBI	GATC	2 cut(s)	224, 400
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 355, 515
BstNI	CCWGG	2 cut(s)	176, 342
BstSCI	CCNGG	2 cut(s)	174, 340
BstSFI	CTRYAG	1 cut(s)	531
BstSLI	GKGCMC	1 cut(s)	434
BstUI	CGCG	2 cut(s)	211, 321
BstV2I	GAAGAC	1 cut(s)	497
BstXI	CCANNNNNNTGG	1 cut(s)	296
BsuRI	GGCC	3 cut(s)	179, 251, 281
BtgI	CCRYGG	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	180, 520
BtsIMutI	CAGTG	1 cut(s)	501
Cac8I	GCNNGC	2 cut(s)	249, 424
CfoI	GCGC	2 cut(s)	321, 520
Cfr10I	RCCGGY	2 cut(s)	247, 422
Cfr42I	CCGCGG	1 cut(s)	212
DdeI	CTNAG	3 cut(s)	17, 393, 486
DpnI	GATC	2 cut(s)	226, 402
DpnII	GATC	2 cut(s)	224, 400
EaeI	YGGCCR	2 cut(s)	249, 279
EcoRII	CCWGG	2 cut(s)	174, 340
FaiI	YATR	4 cut(s)	80, 420, 470, 533
FauI	CCCGC	1 cut(s)	456
Fnu4HI	GCNGC	3 cut(s)	209, 279, 350
FokI	GGATG	2 cut(s)	167, 527
Fsp4HI	GCNGC	3 cut(s)	209, 279, 350
FspBI	CTAG	4 cut(s)	111, 129, 141, 165
FspI	TGCGCA	1 cut(s)	519
GlaI	GCGC	2 cut(s)	320, 519
GluI	GCNGC	3 cut(s)	209, 279, 350
HaeIII	GGCC	3 cut(s)	179, 251, 281
HapII	CCGG	2 cut(s)	248, 423
HhaI	GCGC	2 cut(s)	321, 520
Hin6I	GCGC	2 cut(s)	319, 518
HinP1I	GCGC	2 cut(s)	319, 518
HpaII	CCGG	2 cut(s)	248, 423
HphI	GGTGA	1 cut(s)	81
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	1 cut(s)	396
Hpy188III	TCNNGA	3 cut(s)	54, 265, 404
Hpy8I	GTNNAC	1 cut(s)	432
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	3 cut(s)	104, 200, 496
HpyCH4V	TGCA	1 cut(s)	432
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 355, 515
HpyF3I	CTNAG	3 cut(s)	17, 393, 486
HspAI	GCGC	2 cut(s)	319, 518
KroI	GCCGGC	2 cut(s)	247, 422
KroNI	GCCGGC	2 cut(s)	249, 424
KspI	CCGCGG	1 cut(s)	212
Kzo9I	GATC	2 cut(s)	224, 400
LmnI	GCTCC	1 cut(s)	149
LweI	GCATC	2 cut(s)	361, 505
MaeI	CTAG	4 cut(s)	111, 129, 141, 165
MaeIII	GTNAC	2 cut(s)	104, 185
MalI	GATC	2 cut(s)	226, 402
MboI	GATC	2 cut(s)	224, 400
MboII	GAAGA	1 cut(s)	502
MhlI	GDGCHC	1 cut(s)	434
MluCI	AATT	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	7 cut(s)	44, 61, 73, 323, 402, 462, 505
MroNI	GCCGGC	2 cut(s)	247, 422
MseI	TTAA	2 cut(s)	47, 372
MspA1I	CMGCKG	2 cut(s)	211, 292
MspI	CCGG	2 cut(s)	248, 423
MspR9I	CCNGG	2 cut(s)	176, 342
MvaI	CCWGG	2 cut(s)	176, 342
MvnI	CGCG	2 cut(s)	211, 321
MwoI	GCNNNNNNNGC	3 cut(s)	257, 355, 515
NaeI	GCCGGC	2 cut(s)	249, 424
NdeII	GATC	2 cut(s)	224, 400
NgoMIV	GCCGGC	2 cut(s)	247, 422
NmeAIII	GCCGAG	1 cut(s)	535
NsbI	TGCGCA	1 cut(s)	519
PdiI	GCCGGC	2 cut(s)	249, 424
PkrI	GCNGC	3 cut(s)	210, 280, 351
Psp6I	CCWGG	2 cut(s)	174, 340
PspGI	CCWGG	2 cut(s)	174, 340
PvuII	CAGCTG	1 cut(s)	292
SacII	CCGCGG	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	47, 372
SatI	GCNGC	3 cut(s)	209, 279, 350
Sau3AI	GATC	2 cut(s)	224, 400
ScrFI	CCNGG	2 cut(s)	176, 342
SduI	GDGCHC	1 cut(s)	434
SetI	ASST	9 cut(s)	53, 94, 100, 146, 294, 306, 343, 416, 538
SfaNI	GCATC	2 cut(s)	361, 505
SfcI	CTRYAG	1 cut(s)	531
Sfr303I	CCGCGG	1 cut(s)	212
SgrBI	CCGCGG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	9 cut(s)	5, 23, 209, 211, 258, 278, 321, 349, 449
SspI	AATATT	1 cut(s)	86
SspMI	CTAG	4 cut(s)	111, 129, 141, 165
StyD4I	CCNGG	2 cut(s)	174, 340
TaaI	ACNGT	3 cut(s)	104, 200, 496
TaqI	TCGA	1 cut(s)	55
TasI	AATT	1 cut(s)	28
TauI	GCSGC	3 cut(s)	211, 281, 352
Tru1I	TTAA	2 cut(s)	47, 372
Tru9I	TTAA	2 cut(s)	47, 372
TscAI	CASTG	1 cut(s)	501
TspDTI	ATGAA	1 cut(s)	95
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	1 cut(s)	501
VneI	GTGCAC	1 cut(s)	430
XspI	CTAG	4 cut(s)	111, 129, 141, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.