Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005989

Physical Location & Seq

Genomic Coordinates Reverse (-)

8018947 .. 8019522

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g11860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCTGTTGAAGTTCTCAGTCCCAAGGATTGCCACAAAGACTCGCTCACACGCCAATCAGTAATGAATTTCAATCGGAACCCTAACCCTAGCCGCCTCGGCCGCCCCAGCCGCCCCCAGAACGACGGCAAGAACCGAAGGCCCACCCGGCCCAATAACCTACCTCGCCCGGTCCAGAAGTCCCCGGCTCCCCAAAACCTCGTCATGGGCCAGGTCAAAATCCTCAAGCGCGGTGAAGAAATCCCCAAAACGGCGCCGGCTACACCACCACCGAAGCAAAATTTCAAGCCCCAAGTGCCGGCTCCGCCACCACAGAAGCAGAATCCCAAGGCCCAAGTTCCGGATCTCGGAAACACGAACCTGATGGGTCCGGCACCCGAGCGGGTTCCGAAGCAGACCAAAAACAAGGACTCGAACATGACTGCCGGGTTCTACGCCGGGTCATCGTCGTGCATAGCCTCGCCGCCTCCGAGCTCTCTGCCTCTTCCGTCGTTCTTCGCCAAGAAGAGCGTTGTCTCGAGCACCGACGCTGCGGCAAGCGAGCTGCTGAAGCTTCTGCGGCTTAATTTGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

192

Amino Acids

20.71

Weight (kDa)

10.63

Isoelectric Point (pI)

77.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25250 AT4G32020
fragaria_vesca	FvH4_1g16040 FvH4_2g28260 FvH4_6g47730 FvH4_7g22490 FvH4_7g24010
malus_domestica	MD15G1131400.v1.1
prunus_persica	Prupe.1G486700_v2.0.a1 Prupe.1G486800_v2.0.a1
pyrus_communis	pycom08g13360 pycom15g11860
rosa_chinensis	RchiOBHm_Chr6g0297171
rosa_laevigata	RLG00000011625 RLG00000027299
rosa_multiflora	Rmu_co8054888.1_g000001 Rmu_sc0001574.1_g000004 Rmu_sc0007424.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170820
rosa_rugosa	Rorug01G0334300 Rorug06G0269500
rosa_samantha	Rh6AG380600 Rh6BG388700 Rh6CG394000 Rh6DG380600
rosa_wichuraiana	Rw1G030330 Rw6G033140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	253, 373
AccBSI	CCGCTC	1 cut(s)	382
AccII	CGCG	1 cut(s)	231
AccIII	TCCGGA	1 cut(s)	340
AciI	CCGC	9 cut(s)	94, 103, 112, 231, 305, 382, 464, 533, 559
AclWI	GGATC	1 cut(s)	351
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	2 cut(s)	67, 280
AcuI	CTGAAG	1 cut(s)	569
AcyI	GRCGYC	1 cut(s)	254
AfiI	CCNNNNNNNGG	5 cut(s)	205, 250, 298, 340, 347
AgsI	TTSAA	3 cut(s)	11, 73, 286
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	3 cut(s)	474, 544, 553
AluI	AGCT	3 cut(s)	474, 544, 553
Alw21I	GWGCWC	2 cut(s)	476, 524
Alw26I	GTCTC	1 cut(s)	520
AlwI	GGATC	1 cut(s)	351
Ama87I	CYCGRG	2 cut(s)	377, 517
Aor13HI	TCCGGA	1 cut(s)	340
AoxI	GGCC	5 cut(s)	100, 140, 149, 208, 330
ApeKI	GCWGC	2 cut(s)	530, 544
ApoI	RAATTY	2 cut(s)	67, 280
AspLEI	GCGC	2 cut(s)	231, 256
AspS9I	GGNCC	6 cut(s)	141, 150, 172, 208, 331, 368
AsuC2I	CCSGG	5 cut(s)	148, 170, 185, 427, 439
AsuHPI	GGTGA	1 cut(s)	245
AvaI	CYCGRG	2 cut(s)	377, 517
AvaII	GGWCC	2 cut(s)	172, 368
BanI	GGYRCC	2 cut(s)	253, 373
BanII	GRGCYC	1 cut(s)	476
Bbv12I	GWGCWC	2 cut(s)	476, 524
BbvI	GCAGC	2 cut(s)	517, 531
BccI	CCATC	1 cut(s)	358
BceAI	ACGGC	2 cut(s)	142, 267
BcgI	CGANNNNNNTGC	2 cut(s)	460, 494
BciT130I	CCWGG	1 cut(s)	212
BcnI	CCSGG	5 cut(s)	148, 170, 185, 427, 439
BcoDI	GTCTC	1 cut(s)	520
BfaI	CTAG	1 cut(s)	90
BfoI	RGCGCY	1 cut(s)	257
BglI	GCCNNNNNGGC	2 cut(s)	99, 148
BisI	GCNGC	8 cut(s)	94, 103, 112, 464, 531, 534, 545, 560
BlsI	GCNGC	8 cut(s)	95, 104, 113, 465, 532, 535, 546, 561
Bme1390I	CCNGG	6 cut(s)	148, 170, 185, 212, 427, 439
Bme18I	GGWCC	2 cut(s)	172, 368
BmeT110I	CYCGRG	2 cut(s)	377, 517
BmgT120I	GGNCC	6 cut(s)	141, 150, 172, 208, 331, 368
BmiI	GGNNCC	7 cut(s)	80, 189, 255, 303, 369, 375, 387
BmrFI	CCNGG	6 cut(s)	148, 170, 185, 212, 427, 439
BpuEI	CTTGAG	1 cut(s)	209
BpuMI	CCSGG	5 cut(s)	148, 170, 185, 427, 439
BsaHI	GRCGYC	1 cut(s)	254
BsaJI	CCNNGG	4 cut(s)	24, 97, 183, 327
BsaWI	WCCGGW	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	5 cut(s)	205, 250, 298, 340, 347
Bse118I	RCCGGY	2 cut(s)	256, 298
BseAI	TCCGGA	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	4 cut(s)	24, 97, 183, 327
BseLI	CCNNNNNNNGG	5 cut(s)	205, 250, 298, 340, 347
BseMII	CTCAG	1 cut(s)	31
BseX3I	CGGCCG	1 cut(s)	100
BseXI	GCAGC	2 cut(s)	517, 531
BseYI	CCCAGC	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	231
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	5 cut(s)	102, 142, 151, 210, 332
BshNI	GGYRCC	2 cut(s)	253, 373
BsiEI	CGRYCG	1 cut(s)	103
BsiHKAI	GWGCWC	2 cut(s)	476, 524
BsiHKCI	CYCGRG	2 cut(s)	377, 517
BsiSI	CCGG	9 cut(s)	148, 170, 185, 257, 299, 341, 371, 426, 438
BslFI	GGGAC	2 cut(s)	6, 166
BslI	CCNNNNNNNGG	5 cut(s)	205, 250, 298, 340, 347
BsmAI	GTCTC	1 cut(s)	520
BsmFI	GGGAC	2 cut(s)	6, 166
BsnI	GGCC	5 cut(s)	102, 142, 151, 210, 332
BsoBI	CYCGRG	2 cut(s)	377, 517
Bsp1286I	GDGCHC	2 cut(s)	476, 524
Bsp13I	TCCGGA	1 cut(s)	340
Bsp143I	GATC	1 cut(s)	343
BspACI	CCGC	9 cut(s)	94, 103, 112, 231, 305, 382, 464, 533, 559
BspANI	GGCC	5 cut(s)	102, 142, 151, 210, 332
BspCNI	CTCAG	1 cut(s)	30
BspEI	TCCGGA	1 cut(s)	340
BspFNI	CGCG	1 cut(s)	231
BspLI	GGNNCC	7 cut(s)	80, 189, 255, 303, 369, 375, 387
BspPI	GGATC	1 cut(s)	351
BspQI	GCTCTTC	1 cut(s)	500
BspT107I	GGYRCC	2 cut(s)	253, 373
BsrBI	CCGCTC	1 cut(s)	382
BsrFI	RCCGGY	2 cut(s)	256, 298
BssAI	RCCGGY	2 cut(s)	256, 298
BssECI	CCNNGG	4 cut(s)	24, 97, 183, 327
BssMI	GATC	1 cut(s)	343
BssNI	GRCGYC	1 cut(s)	254
BssT1I	CCWWGG	2 cut(s)	24, 327
Bst2UI	CCWGG	1 cut(s)	212
Bst6I	CTCTTC	2 cut(s)	489, 500
BstACI	GRCGYC	1 cut(s)	254
BstC8I	GCNNGC	4 cut(s)	258, 300, 538, 542
BstDEI	CTNAG	1 cut(s)	17
BstFNI	CGCG	1 cut(s)	231
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	2 cut(s)	231, 256
BstKTI	GATC	1 cut(s)	346
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	1 cut(s)	343
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	9 cut(s)	99, 102, 108, 111, 148, 295, 304, 550, 559
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	6 cut(s)	146, 168, 183, 210, 425, 437
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	2 cut(s)	517, 531
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BstZI	CGGCCG	1 cut(s)	100
BsuRI	GGCC	5 cut(s)	102, 142, 151, 210, 332
Cac8I	GCNNGC	4 cut(s)	258, 300, 538, 542
CfoI	GCGC	2 cut(s)	231, 256
Cfr10I	RCCGGY	2 cut(s)	256, 298
Cfr13I	GGNCC	6 cut(s)	141, 150, 172, 208, 331, 368
CseI	GACGC	1 cut(s)	536
CviAII	CATG	2 cut(s)	205, 418
DdeI	CTNAG	1 cut(s)	17
DinI	GGCGCC	1 cut(s)	255
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
EaeI	YGGCCR	1 cut(s)	100
EagI	CGGCCG	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	489, 500
EarI	CTCTTC	2 cut(s)	489, 500
EciI	GGCGGA	1 cut(s)	294
Ecl136II	GAGCTC	1 cut(s)	474
EclXI	CGGCCG	1 cut(s)	100
Eco130I	CCWWGG	2 cut(s)	24, 327
Eco24I	GRGCYC	1 cut(s)	476
Eco47I	GGWCC	2 cut(s)	172, 368
Eco52I	CGGCCG	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	474
Eco57I	CTGAAG	1 cut(s)	569
Eco88I	CYCGRG	2 cut(s)	377, 517
EcoICRI	GAGCTC	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	2 cut(s)	24, 327
EcoT38I	GRGCYC	1 cut(s)	476
EgeI	GGCGCC	1 cut(s)	255
EheI	GGCGCC	1 cut(s)	255
ErhI	CCWWGG	2 cut(s)	24, 327
FaeI	CATG	2 cut(s)	208, 421
FaiI	YATR	3 cut(s)	206, 419, 455
FaqI	GGGAC	2 cut(s)	6, 166
FatI	CATG	2 cut(s)	204, 417
FauI	CCCGC	1 cut(s)	375
Fnu4HI	GCNGC	8 cut(s)	94, 103, 112, 464, 531, 534, 545, 560
FriOI	GRGCYC	1 cut(s)	476
Fsp4HI	GCNGC	8 cut(s)	94, 103, 112, 464, 531, 534, 545, 560
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	2 cut(s)	230, 255
GluI	GCNGC	8 cut(s)	94, 103, 112, 464, 531, 534, 545, 560
GsaI	CCCAGC	1 cut(s)	111
HaeII	RGCGCY	1 cut(s)	257
HaeIII	GGCC	5 cut(s)	102, 142, 151, 210, 332
HapII	CCGG	9 cut(s)	148, 170, 185, 257, 299, 341, 371, 426, 438
HgaI	GACGC	1 cut(s)	536
HhaI	GCGC	2 cut(s)	231, 256
Hin1I	GRCGYC	1 cut(s)	254
Hin1II	CATG	2 cut(s)	208, 421
Hin6I	GCGC	2 cut(s)	229, 254
HinP1I	GCGC	2 cut(s)	229, 254
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	3 cut(s)	41, 322, 410
HpaII	CCGG	9 cut(s)	148, 170, 185, 257, 299, 341, 371, 426, 438
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	4 cut(s)	78, 350, 390, 471
Hpy188III	TCNNGA	3 cut(s)	175, 341, 517
Hpy99I	CGWCG	4 cut(s)	128, 451, 493, 530
HpyAV	CCTTC	1 cut(s)	132
HpyCH4V	TGCA	1 cut(s)	453
HpyF10VI	GCNNNNNNNGC	9 cut(s)	99, 102, 108, 111, 148, 295, 304, 550, 559
HpyF3I	CTNAG	1 cut(s)	17
Hsp92I	GRCGYC	1 cut(s)	254
Hsp92II	CATG	2 cut(s)	208, 421
HspAI	GCGC	2 cut(s)	229, 254
KasI	GGCGCC	1 cut(s)	253
Kpn2I	TCCGGA	1 cut(s)	340
KroI	GCCGGC	2 cut(s)	256, 298
KroNI	GCCGGC	2 cut(s)	258, 300
Kzo9I	GATC	1 cut(s)	343
LguI	GCTCTTC	1 cut(s)	500
LmnI	GCTCC	2 cut(s)	193, 307
Lsp1109I	GCAGC	2 cut(s)	517, 531
MaeI	CTAG	1 cut(s)	90
MalI	GATC	1 cut(s)	345
MbiI	CCGCTC	1 cut(s)	382
MboI	GATC	1 cut(s)	343
MboII	GAAGA	4 cut(s)	248, 476, 487, 517
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	2 cut(s)	476, 524
MluCI	AATT	3 cut(s)	67, 280, 565
Mly113I	GGCGCC	1 cut(s)	254
MlyI	GAGTC	2 cut(s)	35, 404
MnlI	CCTC	7 cut(s)	107, 174, 209, 233, 469, 477, 492
MroI	TCCGGA	1 cut(s)	340
MroNI	GCCGGC	2 cut(s)	256, 298
MseI	TTAA	1 cut(s)	564
MslI	CAYNNNNRTG	1 cut(s)	448
MspI	CCGG	9 cut(s)	148, 170, 185, 257, 299, 341, 371, 426, 438
MspR9I	CCNGG	6 cut(s)	148, 170, 185, 212, 427, 439
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	9 cut(s)	99, 102, 108, 111, 148, 295, 304, 550, 559
NaeI	GCCGGC	2 cut(s)	258, 300
NarI	GGCGCC	1 cut(s)	254
NciI	CCSGG	5 cut(s)	148, 170, 185, 427, 439
NdeII	GATC	1 cut(s)	343
NgoMIV	GCCGGC	2 cut(s)	256, 298
NlaIII	CATG	2 cut(s)	208, 421
NlaIV	GGNNCC	7 cut(s)	80, 189, 255, 303, 369, 375, 387
NmeAIII	GCCGAG	1 cut(s)	78
PaeR7I	CTCGAG	1 cut(s)	517
PciSI	GCTCTTC	1 cut(s)	500
PcsI	WCGNNNNNNNCGW	1 cut(s)	467
PdiI	GCCGGC	2 cut(s)	258, 300
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	8 cut(s)	95, 104, 113, 465, 532, 535, 546, 561
PleI	GAGTC	2 cut(s)	35, 404
PluTI	GGCGCC	1 cut(s)	257
PpsI	GAGTC	2 cut(s)	35, 404
Psp124BI	GAGCTC	1 cut(s)	476
Psp6I	CCWGG	1 cut(s)	210
PspFI	CCCAGC	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	7 cut(s)	80, 189, 255, 303, 369, 375, 387
PspPI	GGNCC	6 cut(s)	141, 150, 172, 208, 331, 368
PsuI	RGATCY	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	448
SacI	GAGCTC	1 cut(s)	476
SapI	GCTCTTC	1 cut(s)	500
SaqAI	TTAA	1 cut(s)	564
SatI	GCNGC	8 cut(s)	94, 103, 112, 464, 531, 534, 545, 560
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	6 cut(s)	141, 150, 172, 208, 331, 368
SchI	GAGTC	2 cut(s)	35, 404
ScrFI	CCNGG	6 cut(s)	148, 170, 185, 212, 427, 439
SduI	GDGCHC	2 cut(s)	476, 524
SetI	ASST	8 cut(s)	162, 166, 201, 216, 363, 476, 546, 555
SfiI	GGCCNNNNNGGCC	1 cut(s)	148
SfoI	GGCGCC	1 cut(s)	255
Sfr274I	CTCGAG	1 cut(s)	517
SinI	GGWCC	2 cut(s)	172, 368
SlaI	CTCGAG	1 cut(s)	517
SmiMI	CAYNNNNRTG	1 cut(s)	448
SmlI	CTYRAG	2 cut(s)	224, 517
SmoI	CTYRAG	2 cut(s)	224, 517
Sse9I	AATT	3 cut(s)	67, 280, 565
SsiI	CCGC	9 cut(s)	94, 103, 112, 231, 305, 382, 464, 533, 559
SspDI	GGCGCC	1 cut(s)	253
SspMI	CTAG	1 cut(s)	90
SstI	GAGCTC	1 cut(s)	476
StyD4I	CCNGG	6 cut(s)	146, 168, 183, 210, 425, 437
StyI	CCWWGG	2 cut(s)	24, 327
TaqI	TCGA	2 cut(s)	413, 518
TasI	AATT	3 cut(s)	67, 280, 565
TauI	GCSGC	6 cut(s)	96, 105, 114, 466, 536, 562
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	1 cut(s)	564
Tru9I	TTAA	1 cut(s)	564
TseI	GCWGC	2 cut(s)	530, 544
TspDTI	ATGAA	1 cut(s)	80
TspGWI	ACGGA	1 cut(s)	477
VpaK11BI	GGWCC	2 cut(s)	172, 368
XapI	RAATTY	2 cut(s)	67, 280
XhoI	CTCGAG	1 cut(s)	517
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.