Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0005989

Physical Location & Seq

Genomic Coordinates Reverse (-)

12122612 .. 12123184

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g13360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCTGTTGAAGTTCTCAGTCCCAAGGATTGCCTCATGGACTCACTCTCACGCCAGTCAGTAACGAATTTCAATCGGAACCCTAACCCTAGCTGCCTCGGCCGCCCAAGCCGCCCCCAGCCCGACGGCAAGAACCGAAGGCCCAACCGGCCCAATAACCTTCCTCGCCCGGTCCAGAAATTCCCGGTCCCCCAAAACCTTGTCATGGGTCAGGTCAAAATCCTCAAGCGGGGCGAAGAAATCCCCAAAACGGCGCCGGCTCCACCACTACAGAAGCAAAATTTCAAGCCCCAAGTGCCGGCTCCGCCGCCACAGAAGCAGAATCCCAAGCCCCAAGCTCCGGATCTCGGAAACACGAACCGGATGGGCCCGGAACCGAAACGGGTTCCCAAGCTGAGCAAACAGGCGGACCGGAACCGGACTGCCGGTTTCTACGCCGGATCGTCGTCGTGCATAGCCTCGCCGCCTCCGAGCTCTCTGCCTCTGCCATCCTTTTTCGCCAAGAAGGGCGTTGCCACAAACACCGATGCTGCGGCAAGCGAGCTGCTGAAGCTTCTGCGGCTGAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

20.73

Weight (kDa)

10.73

Isoelectric Point (pI)

74.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25250 AT4G32020
fragaria_vesca	FvH4_1g16040 FvH4_2g28260 FvH4_6g47730 FvH4_7g22490 FvH4_7g24010
malus_domestica	MD15G1131400.v1.1
prunus_persica	Prupe.1G486700_v2.0.a1 Prupe.1G486800_v2.0.a1
pyrus_communis	pycom08g13360 pycom15g11860
rosa_chinensis	RchiOBHm_Chr6g0297171
rosa_laevigata	RLG00000011625 RLG00000027299
rosa_multiflora	Rmu_co8054888.1_g000001 Rmu_sc0001574.1_g000004 Rmu_sc0007424.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170820
rosa_rugosa	Rorug01G0334300 Rorug06G0269500
rosa_samantha	Rh6AG380600 Rh6BG388700 Rh6CG394000 Rh6DG380600
rosa_wichuraiana	Rw1G030330 Rw6G033140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	253
AccIII	TCCGGA	1 cut(s)	340
AciI	CCGC	9 cut(s)	103, 112, 229, 305, 308, 407, 464, 533, 559
AclWI	GGATC	2 cut(s)	351, 448
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	4 cut(s)	67, 179, 280, 565
AcuI	CTGAAG	1 cut(s)	569
AcyI	GRCGYC	1 cut(s)	254
AfiI	CCNNNNNNNGG	6 cut(s)	205, 229, 250, 298, 340, 347
AgsI	TTSAA	3 cut(s)	11, 73, 286
AluBI	AGCT	6 cut(s)	93, 338, 394, 474, 544, 553
AluI	AGCT	6 cut(s)	93, 338, 394, 474, 544, 553
Alw21I	GWGCWC	1 cut(s)	476
AlwI	GGATC	2 cut(s)	351, 448
Aor13HI	TCCGGA	1 cut(s)	340
AoxI	GGCC	4 cut(s)	100, 140, 149, 367
ApaI	GGGCCC	1 cut(s)	371
ApeKI	GCWGC	3 cut(s)	93, 530, 544
ApoI	RAATTY	4 cut(s)	67, 179, 280, 565
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	7 cut(s)	141, 150, 172, 187, 367, 368, 409
AsuC2I	CCSGG	3 cut(s)	170, 185, 371
AvaII	GGWCC	3 cut(s)	172, 187, 409
BaeGI	GKGCMC	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	253
BanII	GRGCYC	2 cut(s)	371, 476
Bbv12I	GWGCWC	1 cut(s)	476
BbvI	GCAGC	3 cut(s)	80, 517, 531
BccI	CCATC	2 cut(s)	358, 496
BceAI	ACGGC	2 cut(s)	142, 267
BcgI	CGANNNNNNTGC	2 cut(s)	460, 494
BcnI	CCSGG	3 cut(s)	170, 185, 371
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	269
BfoI	RGCGCY	1 cut(s)	257
BglI	GCCNNNNNGGC	1 cut(s)	148
BisI	GCNGC	9 cut(s)	94, 103, 112, 308, 464, 531, 534, 545, 560
BlpI	GCTNAGC	1 cut(s)	395
BlsI	GCNGC	9 cut(s)	95, 104, 113, 309, 465, 532, 535, 546, 561
Bme1390I	CCNGG	3 cut(s)	170, 185, 371
Bme18I	GGWCC	3 cut(s)	172, 187, 409
BmgT120I	GGNCC	7 cut(s)	141, 150, 172, 187, 367, 368, 409
BmiI	GGNNCC	9 cut(s)	80, 189, 255, 261, 303, 369, 375, 387, 416
BmrFI	CCNGG	3 cut(s)	170, 185, 371
BmsI	GCATC	1 cut(s)	517
Bpu1102I	GCTNAGC	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	209
BpuMI	CCSGG	3 cut(s)	170, 185, 371
BsaHI	GRCGYC	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	24, 97
BsaWI	WCCGGW	4 cut(s)	340, 360, 411, 417
Bsc4I	CCNNNNNNNGG	6 cut(s)	205, 229, 250, 298, 340, 347
Bse118I	RCCGGY	4 cut(s)	147, 256, 298, 425
Bse1I	ACTGG	1 cut(s)	55
BseAI	TCCGGA	1 cut(s)	340
BseDI	CCNNGG	2 cut(s)	24, 97
BseGI	GGATG	2 cut(s)	369, 488
BseLI	CCNNNNNNNGG	6 cut(s)	205, 229, 250, 298, 340, 347
BseMII	CTCAG	2 cut(s)	31, 386
BseNI	ACTGG	1 cut(s)	55
BseSI	GKGCMC	1 cut(s)	371
BseX3I	CGGCCG	1 cut(s)	100
BseXI	GCAGC	3 cut(s)	80, 517, 531
BseYI	CCCAGC	1 cut(s)	117
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	4 cut(s)	102, 142, 151, 369
BshNI	GGYRCC	1 cut(s)	253
BsiEI	CGRYCG	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	476
BslFI	GGGAC	2 cut(s)	6, 173
BslI	CCNNNNNNNGG	6 cut(s)	205, 229, 250, 298, 340, 347
BsmFI	GGGAC	2 cut(s)	6, 173
BsnI	GGCC	4 cut(s)	102, 142, 151, 369
Bsp120I	GGGCCC	1 cut(s)	367
Bsp1286I	GDGCHC	2 cut(s)	371, 476
Bsp13I	TCCGGA	1 cut(s)	340
Bsp143I	GATC	2 cut(s)	343, 440
Bsp1720I	GCTNAGC	1 cut(s)	395
BspACI	CCGC	9 cut(s)	103, 112, 229, 305, 308, 407, 464, 533, 559
BspANI	GGCC	4 cut(s)	102, 142, 151, 369
BspCNI	CTCAG	2 cut(s)	30, 387
BspEI	TCCGGA	1 cut(s)	340
BspLI	GGNNCC	9 cut(s)	80, 189, 255, 261, 303, 369, 375, 387, 416
BspPI	GGATC	2 cut(s)	351, 448
BspT107I	GGYRCC	1 cut(s)	253
BsrFI	RCCGGY	4 cut(s)	147, 256, 298, 425
BsrI	ACTGG	1 cut(s)	55
BssAI	RCCGGY	4 cut(s)	147, 256, 298, 425
BssECI	CCNNGG	2 cut(s)	24, 97
BssMI	GATC	2 cut(s)	343, 440
BssNI	GRCGYC	1 cut(s)	254
BssT1I	CCWWGG	1 cut(s)	24
BstACI	GRCGYC	1 cut(s)	254
BstC8I	GCNNGC	4 cut(s)	258, 300, 538, 542
BstDEI	CTNAG	2 cut(s)	17, 395
BstF5I	GGATG	2 cut(s)	369, 488
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	2 cut(s)	346, 443
BstMBI	GATC	2 cut(s)	343, 440
BstMCI	CGRYCG	1 cut(s)	103
BstSCI	CCNGG	3 cut(s)	168, 183, 369
BstSFI	CTRYAG	1 cut(s)	269
BstSLI	GKGCMC	1 cut(s)	371
BstV1I	GCAGC	3 cut(s)	80, 517, 531
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BstZI	CGGCCG	1 cut(s)	100
BsuRI	GGCC	4 cut(s)	102, 142, 151, 369
BtsCI	GGATG	2 cut(s)	369, 488
Cac8I	GCNNGC	4 cut(s)	258, 300, 538, 542
CfoI	GCGC	1 cut(s)	256
Cfr10I	RCCGGY	4 cut(s)	147, 256, 298, 425
Cfr13I	GGNCC	7 cut(s)	141, 150, 172, 187, 367, 368, 409
CpoI	CGGWCCG	1 cut(s)	409
CspI	CGGWCCG	1 cut(s)	409
CviAII	CATG	2 cut(s)	37, 205
DdeI	CTNAG	2 cut(s)	17, 395
DinI	GGCGCC	1 cut(s)	255
DpnI	GATC	2 cut(s)	345, 442
DpnII	GATC	2 cut(s)	343, 440
EaeI	YGGCCR	1 cut(s)	100
EagI	CGGCCG	1 cut(s)	100
EciI	GGCGGA	2 cut(s)	294, 422
Ecl136II	GAGCTC	1 cut(s)	474
EclXI	CGGCCG	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	24
Eco24I	GRGCYC	2 cut(s)	371, 476
Eco47I	GGWCC	3 cut(s)	172, 187, 409
Eco52I	CGGCCG	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	474
Eco57I	CTGAAG	1 cut(s)	569
EcoICRI	GAGCTC	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	24
EcoT38I	GRGCYC	2 cut(s)	371, 476
EgeI	GGCGCC	1 cut(s)	255
EheI	GGCGCC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	2 cut(s)	40, 208
FaiI	YATR	3 cut(s)	38, 206, 455
FaqI	GGGAC	2 cut(s)	6, 173
FatI	CATG	2 cut(s)	36, 204
FauI	CCCGC	1 cut(s)	222
Fnu4HI	GCNGC	9 cut(s)	94, 103, 112, 308, 464, 531, 534, 545, 560
FokI	GGATG	2 cut(s)	376, 475
FriOI	GRGCYC	2 cut(s)	371, 476
Fsp4HI	GCNGC	9 cut(s)	94, 103, 112, 308, 464, 531, 534, 545, 560
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	9 cut(s)	94, 103, 112, 308, 464, 531, 534, 545, 560
GsaI	CCCAGC	1 cut(s)	121
HaeII	RGCGCY	1 cut(s)	257
HaeIII	GGCC	4 cut(s)	102, 142, 151, 369
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	1 cut(s)	254
Hin1II	CATG	2 cut(s)	40, 208
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	2 cut(s)	41, 322
Hpy188I	TCNGA	3 cut(s)	78, 350, 471
Hpy188III	TCNNGA	2 cut(s)	175, 341
Hpy99I	CGWCG	3 cut(s)	128, 448, 451
HpyAV	CCTTC	3 cut(s)	132, 170, 499
HpyCH4V	TGCA	1 cut(s)	453
HpyF3I	CTNAG	2 cut(s)	17, 395
Hsp92I	GRCGYC	1 cut(s)	254
Hsp92II	CATG	2 cut(s)	40, 208
HspAI	GCGC	1 cut(s)	254
KasI	GGCGCC	1 cut(s)	253
Kpn2I	TCCGGA	1 cut(s)	340
KroI	GCCGGC	2 cut(s)	256, 298
KroNI	GCCGGC	2 cut(s)	258, 300
Kzo9I	GATC	2 cut(s)	343, 440
LmnI	GCTCC	3 cut(s)	265, 307, 343
Lsp1109I	GCAGC	3 cut(s)	80, 517, 531
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	2 cut(s)	345, 442
MboI	GATC	2 cut(s)	343, 440
MboII	GAAGA	1 cut(s)	248
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	2 cut(s)	371, 476
MluCI	AATT	4 cut(s)	67, 179, 280, 565
Mly113I	GGCGCC	1 cut(s)	254
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	7 cut(s)	44, 107, 174, 233, 469, 477, 492
MroI	TCCGGA	1 cut(s)	340
MroNI	GCCGGC	2 cut(s)	256, 298
MspR9I	CCNGG	3 cut(s)	170, 185, 371
NaeI	GCCGGC	2 cut(s)	258, 300
NarI	GGCGCC	1 cut(s)	254
NciI	CCSGG	3 cut(s)	170, 185, 371
NdeII	GATC	2 cut(s)	343, 440
NgoMIV	GCCGGC	2 cut(s)	256, 298
NlaIII	CATG	2 cut(s)	40, 208
NlaIV	GGNNCC	9 cut(s)	80, 189, 255, 261, 303, 369, 375, 387, 416
NmeAIII	GCCGAG	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	1 cut(s)	467
PdiI	GCCGGC	2 cut(s)	258, 300
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	9 cut(s)	95, 104, 113, 309, 465, 532, 535, 546, 561
PleI	GAGTC	1 cut(s)	35
PluTI	GGCGCC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	35
Psp124BI	GAGCTC	1 cut(s)	476
PspFI	CCCAGC	1 cut(s)	117
PspN4I	GGNNCC	9 cut(s)	80, 189, 255, 261, 303, 369, 375, 387, 416
PspOMI	GGGCCC	1 cut(s)	367
PspPI	GGNCC	7 cut(s)	141, 150, 172, 187, 367, 368, 409
PsuI	RGATCY	1 cut(s)	343
Rsr2I	CGGWCCG	1 cut(s)	409
RsrII	CGGWCCG	1 cut(s)	409
SacI	GAGCTC	1 cut(s)	476
SatI	GCNGC	9 cut(s)	94, 103, 112, 308, 464, 531, 534, 545, 560
Sau3AI	GATC	2 cut(s)	343, 440
Sau96I	GGNCC	7 cut(s)	141, 150, 172, 187, 367, 368, 409
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	3 cut(s)	170, 185, 371
SduI	GDGCHC	2 cut(s)	371, 476
SetI	ASST	9 cut(s)	95, 162, 201, 216, 340, 396, 476, 546, 555
SfaNI	GCATC	1 cut(s)	517
SfcI	CTRYAG	1 cut(s)	269
SfiI	GGCCNNNNNGGCC	1 cut(s)	148
SfoI	GGCGCC	1 cut(s)	255
SinI	GGWCC	3 cut(s)	172, 187, 409
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	4 cut(s)	67, 179, 280, 565
SsiI	CCGC	9 cut(s)	103, 112, 229, 305, 308, 407, 464, 533, 559
SspDI	GGCGCC	1 cut(s)	253
SspMI	CTAG	1 cut(s)	90
SstI	GAGCTC	1 cut(s)	476
StyD4I	CCNGG	3 cut(s)	168, 183, 369
StyI	CCWWGG	1 cut(s)	24
TasI	AATT	4 cut(s)	67, 179, 280, 565
TauI	GCSGC	6 cut(s)	105, 114, 310, 466, 536, 562
TfiI	GAWTC	1 cut(s)	322
TseI	GCWGC	3 cut(s)	93, 530, 544
VpaK11BI	GGWCC	3 cut(s)	172, 187, 409
XapI	RAATTY	4 cut(s)	67, 179, 280, 565
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.