Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005989

Physical Location & Seq

Genomic Coordinates Reverse (-)

40517875 .. 40519182

Gene Structure 1308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G486800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGTGTTAAAGTTCTCAGTCCCCAGAATTGCCTCAAAGACTCTGTCTCACCTCAAGTACTGATGAATTCCAATCGAAGCCCTAACCCTAATCGGGTCAGAACCTCCCCACAAGCCGACCGGACTAAGCGAAGGCCGACCAGGCCCAACAACCACCCAACCCCGCAGGTCCAGAAACCCGCTGCCCCCAAGAATGTCGTGATGGGCCAGGTCAAAATACTAAAACGCGGCGAGGAAATCCCCAAAGCGGCCCCGATTCAGCCACCACCGAAGCAGAATCTCCATCCCCAAGTTCCGGATCTCGGATCCACCAGCCGGATGGGTCCTGACCCGAAGATGGTACCGATTCCTCCGAAGCAGACCAAGTTCCCGGAGCCGAACTGGGCTTCCGGGTTCTACGCCGGGTCGTCGTCGTGCATAGCTGCGCCTCCCCCGAGTTCCCTACCTCTGCCGTCGTTCTTCGCAAAGAAGAGCGCCCCTTCAAGCACCGATGAAGCTGCAAGCGTGCTGCTTAAACTTCTGCGGCTCAATTTGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNRC

Protein Analysis

180

Amino Acids

19.33

Weight (kDa)

10.58

Isoelectric Point (pI)

70.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25250 AT4G32020
fragaria_vesca	FvH4_1g16040 FvH4_2g28260 FvH4_6g47730 FvH4_7g22490 FvH4_7g24010
malus_domestica	MD15G1131400.v1.1
prunus_persica	Prupe.1G486700_v2.0.a1 Prupe.1G486800_v2.0.a1
pyrus_communis	pycom08g13360 pycom15g11860
rosa_chinensis	RchiOBHm_Chr6g0297171
rosa_laevigata	RLG00000011625 RLG00000027299
rosa_multiflora	Rmu_co8054888.1_g000001 Rmu_sc0001574.1_g000004 Rmu_sc0007424.1_g000004
rosa_roxburghii	Rroxscaffold_7G00170820
rosa_rugosa	Rorug01G0334300 Rorug06G0269500
rosa_samantha	Rh6AG380600 Rh6BG388700 Rh6CG394000 Rh6DG380600
rosa_wichuraiana	Rw1G030330 Rw6G033140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	157
Acc65I	GGTACC	1 cut(s)	340
AccB1I	GGYRCC	1 cut(s)	340
AccII	CGCG	1 cut(s)	228
AccIII	TCCGGA	1 cut(s)	295
AciI	CCGC	5 cut(s)	164, 180, 228, 248, 523
AclWI	GGATC	3 cut(s)	300, 306, 313
AcsI	RAATTY	1 cut(s)	67
AfaI	GTAC	2 cut(s)	60, 342
AfiI	CCNNNNNNNGG	6 cut(s)	94, 247, 295, 302, 315, 337
AgsI	TTSAA	1 cut(s)	483
AjnI	CCWGG	2 cut(s)	140, 207
AloI	GAACNNNNNNTCC	2 cut(s)	371, 403
AluBI	AGCT	2 cut(s)	422, 497
AluI	AGCT	2 cut(s)	422, 497
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	3 cut(s)	300, 306, 313
Ama87I	CYCGRG	1 cut(s)	433
Aor13HI	TCCGGA	1 cut(s)	295
AoxI	GGCC	4 cut(s)	134, 143, 205, 249
ApeKI	GCWGC	4 cut(s)	182, 422, 497, 508
ApoI	RAATTY	1 cut(s)	67
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
Asp718I	GGTACC	1 cut(s)	340
AspLEI	GCGC	2 cut(s)	427, 476
AspS9I	GGNCC	5 cut(s)	144, 169, 205, 250, 323
AsuC2I	CCSGG	3 cut(s)	371, 391, 403
AsuHPI	GGTGA	1 cut(s)	42
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	2 cut(s)	169, 323
BamHI	GGATCC	1 cut(s)	305
BanI	GGYRCC	1 cut(s)	340
BbvI	GCAGC	4 cut(s)	169, 409, 484, 495
BccI	CCATC	4 cut(s)	196, 291, 313, 331
BceAI	ACGGC	1 cut(s)	436
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BciT130I	CCWGG	2 cut(s)	142, 209
BcnI	CCSGG	3 cut(s)	371, 391, 403
BcoDI	GTCTC	1 cut(s)	52
BfoI	RGCGCY	1 cut(s)	477
BfuAI	ACCTGC	1 cut(s)	157
BglI	GCCNNNNNGGC	1 cut(s)	142
BisI	GCNGC	7 cut(s)	183, 229, 249, 423, 498, 509, 524
BlsI	GCNGC	7 cut(s)	184, 230, 250, 424, 499, 510, 525
BmcAI	AGTACT	1 cut(s)	60
Bme1390I	CCNGG	5 cut(s)	142, 209, 371, 391, 403
Bme18I	GGWCC	2 cut(s)	169, 323
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	5 cut(s)	144, 169, 205, 250, 323
BmiI	GGNNCC	5 cut(s)	252, 307, 324, 342, 375
BmrFI	CCNGG	5 cut(s)	142, 209, 371, 391, 403
BmrI	ACTGGG	1 cut(s)	391
BmuI	ACTGGG	1 cut(s)	391
BpuEI	CTTGAG	1 cut(s)	39
BpuMI	CCSGG	3 cut(s)	371, 391, 403
BsaWI	WCCGGW	2 cut(s)	120, 295
Bsc4I	CCNNNNNNNGG	6 cut(s)	94, 247, 295, 302, 315, 337
Bse1I	ACTGG	1 cut(s)	386
BseAI	TCCGGA	1 cut(s)	295
BseBI	CCWGG	2 cut(s)	142, 209
BseGI	GGATG	2 cut(s)	283, 324
BseLI	CCNNNNNNNGG	6 cut(s)	94, 247, 295, 302, 315, 337
BseMII	CTCAG	1 cut(s)	31
BseNI	ACTGG	1 cut(s)	386
BseXI	GCAGC	4 cut(s)	169, 409, 484, 495
Bsh1236I	CGCG	1 cut(s)	228
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	4 cut(s)	136, 145, 207, 251
BshNI	GGYRCC	1 cut(s)	340
BsiEI	CGRYCG	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	6 cut(s)	121, 296, 316, 371, 390, 402
BslFI	GGGAC	1 cut(s)	6
BslI	CCNNNNNNNGG	6 cut(s)	94, 247, 295, 302, 315, 337
BsmAI	GTCTC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	6
BsnI	GGCC	4 cut(s)	136, 145, 207, 251
BsoBI	CYCGRG	1 cut(s)	433
Bsp13I	TCCGGA	1 cut(s)	295
Bsp143I	GATC	2 cut(s)	298, 305
BspACI	CCGC	5 cut(s)	164, 180, 228, 248, 523
BspANI	GGCC	4 cut(s)	136, 145, 207, 251
BspCNI	CTCAG	1 cut(s)	30
BspEI	TCCGGA	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	5 cut(s)	252, 307, 324, 342, 375
BspMI	ACCTGC	1 cut(s)	157
BspPI	GGATC	3 cut(s)	300, 306, 313
BspQI	GCTCTTC	1 cut(s)	464
BspT107I	GGYRCC	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	386
BssMI	GATC	2 cut(s)	298, 305
Bst2UI	CCWGG	2 cut(s)	142, 209
Bst6I	CTCTTC	1 cut(s)	464
BstC8I	GCNNGC	2 cut(s)	502, 506
BstDEI	CTNAG	2 cut(s)	17, 126
BstF5I	GGATG	2 cut(s)	283, 324
BstFNI	CGCG	1 cut(s)	228
BstH2I	RGCGCY	1 cut(s)	477
BstHHI	GCGC	2 cut(s)	427, 476
BstKTI	GATC	2 cut(s)	301, 308
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	2 cut(s)	298, 305
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNI	CCWGG	2 cut(s)	142, 209
BstSCI	CCNGG	5 cut(s)	140, 207, 369, 389, 401
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	4 cut(s)	169, 409, 484, 495
BstX2I	RGATCY	2 cut(s)	298, 305
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstYI	RGATCY	2 cut(s)	298, 305
BsuRI	GGCC	4 cut(s)	136, 145, 207, 251
BtsCI	GGATG	2 cut(s)	283, 324
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	502, 506
CfoI	GCGC	2 cut(s)	427, 476
Cfr13I	GGNCC	5 cut(s)	144, 169, 205, 250, 323
Csp6I	GTAC	2 cut(s)	59, 341
CviQI	GTAC	2 cut(s)	59, 341
DdeI	CTNAG	2 cut(s)	17, 126
DpnI	GATC	2 cut(s)	300, 307
DpnII	GATC	2 cut(s)	298, 305
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Eco47I	GGWCC	2 cut(s)	169, 323
Eco88I	CYCGRG	1 cut(s)	433
EcoO109I	RGGNCCY	1 cut(s)	323
EcoRI	GAATTC	1 cut(s)	67
EcoRII	CCWGG	2 cut(s)	140, 207
FaiI	YATR	1 cut(s)	419
FaqI	GGGAC	1 cut(s)	6
FauI	CCCGC	2 cut(s)	171, 187
Fnu4HI	GCNGC	7 cut(s)	183, 229, 249, 423, 498, 509, 524
FokI	GGATG	2 cut(s)	270, 331
Fsp4HI	GCNGC	7 cut(s)	183, 229, 249, 423, 498, 509, 524
GlaI	GCGC	2 cut(s)	426, 475
GluI	GCNGC	7 cut(s)	183, 229, 249, 423, 498, 509, 524
HaeII	RGCGCY	1 cut(s)	477
HaeIII	GGCC	4 cut(s)	136, 145, 207, 251
HapII	CCGG	6 cut(s)	121, 296, 316, 371, 390, 402
HhaI	GCGC	2 cut(s)	427, 476
Hin6I	GCGC	2 cut(s)	425, 474
HinP1I	GCGC	2 cut(s)	425, 474
HinfI	GANTC	4 cut(s)	41, 256, 277, 346
HpaII	CCGG	6 cut(s)	121, 296, 316, 371, 390, 402
HphI	GGTGA	1 cut(s)	42
Hpy188I	TCNGA	3 cut(s)	101, 305, 354
Hpy188III	TCNNGA	4 cut(s)	172, 199, 296, 326
Hpy99I	CGWCG	3 cut(s)	412, 415, 457
HpyAV	CCTTC	2 cut(s)	126, 489
HpyCH4V	TGCA	2 cut(s)	417, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	2 cut(s)	17, 126
HspAI	GCGC	2 cut(s)	425, 474
Kpn2I	TCCGGA	1 cut(s)	295
KpnI	GGTACC	1 cut(s)	344
Kzo9I	GATC	2 cut(s)	298, 305
LguI	GCTCTTC	1 cut(s)	464
LmnI	GCTCC	1 cut(s)	373
Lsp1109I	GCAGC	4 cut(s)	169, 409, 484, 495
MalI	GATC	2 cut(s)	300, 307
MboI	GATC	2 cut(s)	298, 305
MboII	GAAGA	3 cut(s)	346, 451, 481
MflI	RGATCY	2 cut(s)	298, 305
MluCI	AATT	3 cut(s)	28, 67, 529
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	7 cut(s)	44, 63, 115, 226, 360, 438, 456
MroI	TCCGGA	1 cut(s)	295
MseI	TTAA	2 cut(s)	9, 513
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	6 cut(s)	121, 296, 316, 371, 390, 402
MspR9I	CCNGG	5 cut(s)	142, 209, 371, 391, 403
MvaI	CCWGG	2 cut(s)	142, 209
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	1 cut(s)	142
NciI	CCSGG	3 cut(s)	371, 391, 403
NdeII	GATC	2 cut(s)	298, 305
NlaIV	GGNNCC	5 cut(s)	252, 307, 324, 342, 375
PciSI	GCTCTTC	1 cut(s)	464
PfeI	GAWTC	3 cut(s)	256, 277, 346
PflFI	GACNNNGTC	1 cut(s)	44
PfoI	TCCNGGA	1 cut(s)	369
PkrI	GCNGC	7 cut(s)	184, 230, 250, 424, 499, 510, 525
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PpuMI	RGGWCCY	1 cut(s)	323
Psp5II	RGGWCCY	1 cut(s)	323
Psp6I	CCWGG	2 cut(s)	140, 207
PspGI	CCWGG	2 cut(s)	140, 207
PspN4I	GGNNCC	5 cut(s)	252, 307, 324, 342, 375
PspPI	GGNCC	5 cut(s)	144, 169, 205, 250, 323
PspPPI	RGGWCCY	1 cut(s)	323
PsuI	RGATCY	2 cut(s)	298, 305
PsyI	GACNNNGTC	1 cut(s)	44
RsaI	GTAC	2 cut(s)	60, 342
RsaNI	GTAC	2 cut(s)	59, 341
SapI	GCTCTTC	1 cut(s)	464
SaqAI	TTAA	2 cut(s)	9, 513
SatI	GCNGC	7 cut(s)	183, 229, 249, 423, 498, 509, 524
Sau3AI	GATC	2 cut(s)	298, 305
Sau96I	GGNCC	5 cut(s)	144, 169, 205, 250, 323
ScaI	AGTACT	1 cut(s)	60
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	5 cut(s)	142, 209, 371, 391, 403
SetI	ASST	7 cut(s)	55, 107, 171, 213, 424, 448, 499
SfiI	GGCCNNNNNGGCC	1 cut(s)	142
SinI	GGWCC	2 cut(s)	169, 323
SmlI	CTYRAG	1 cut(s)	54
SmoI	CTYRAG	1 cut(s)	54
Sse9I	AATT	3 cut(s)	28, 67, 529
SsiI	CCGC	5 cut(s)	164, 180, 228, 248, 523
StyD4I	CCNGG	5 cut(s)	140, 207, 369, 389, 401
TaqI	TCGA	1 cut(s)	76
TasI	AATT	3 cut(s)	28, 67, 529
TatI	WGTACW	1 cut(s)	58
TauI	GCSGC	3 cut(s)	231, 251, 526
TfiI	GAWTC	3 cut(s)	256, 277, 346
Tru1I	TTAA	2 cut(s)	9, 513
Tru9I	TTAA	2 cut(s)	9, 513
TseI	GCWGC	4 cut(s)	182, 422, 497, 508
TspDTI	ATGAA	2 cut(s)	80, 507
Tth111I	GACNNNGTC	1 cut(s)	44
VpaK11BI	GGWCC	2 cut(s)	169, 323
XapI	RAATTY	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
ZrmI	AGTACT	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.