Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001400

Physical Location & Seq

Genomic Coordinates Reverse (-)

11287308 .. 11290361

Gene Structure 3054 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G26540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCATTATTACTCCTTTCTCACTGCTCTATCTTATCTTTTCAACCTCCATTATCGTCTTCTTCTTCATTTCATTCTTCACATATCCAATCTCTGAGCAAACCAGTTTTCGCTTCTCCTTCCCCAATTCGAAATTCAATTTCTTCGTCCGTCTCTTCATCTTCTTCCTCCGTTAGTAGCTCCAATTCGATTCCTCAGGTCGTCGTAACACGAGAACGAGGCAAGAACAATCAAATCATCAAAGCTTTGGAGAAAAATGGCATATCATCTTTAGAGCTTCCGTTGATTCAACATGCGCGAGGACCTGATTTCGATCGGCTTGCTTCTGTATTAAATGATAAGAGCTTTGACTGGATCATCATAACATCTCCAGAAGCAGGTTCTGTTTTTCTCGAGGCGTGGAAGACAGCTAGCTCCCCAGAAGTGCAAATAGGTGTAGTAGGAGCTGGAACAGCCAGGGTATTTGAAGAGGCAATGAAATCGGCAGATGGATTGCTTCATGTTGCCTTTACACCATCAAAAGCAACTGGTAAAGTCTTGGCTTCGGAGCTTCCAGAGAAAGTTGGCAAAAGGTCCTCTGTCTTATACCCGGCTTCTCTAAAAGCAGGCAATGATATTGTGGAAGGGTTGTCCAAACGTGGGTTTGAAGTTGTCAGGCTGAATACATACACAACAGTTCCGGTGCAGAGTGTTGATACGGTGCTCCTGCAACAGGCACTATCTGCTCCTGTTCTTTCTGTAGCTTCTCCTTCTGCAGTTCGCGCCTGGCTGCATCTGATTCAAAATGAGGAGCAATGGAGCAATTACGTTGCCTGCATTGGAGAGACAACTGCATCAGCTGCTAGAAGACTAGGATTGAAAAACGTCTACTACCCAGAGAAACCAGGACTTGAAGGGTGGGTCGAGAGCATAATGGAAGCTCTAGGTGCTCACGCAGATTCAAGTAACCCTAGCAGCAGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004852 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006778 GO:0006779 GO:0006780 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046502 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

HEM4

Protein Analysis

321

Amino Acids

34.22

Weight (kDa)

7.81

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEM4	PF02602	78 - 299	2.8e-48	Uroporphyrinogen-III synthase HemD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26540 AT2G26540 AT2G26540
fragaria_vesca	FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880
malus_domestica	MD08G1106500.v1.1 MD15G1087100.v1.1
prunus_persica	Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1
pyrus_communis	pycom08g08790 pycom15g08200
rosa_chinensis	RchiOBHm_Chr6g0307161
rosa_laevigata	RLG00000004395 RLG00000010732
rosa_multiflora	Rmu_sc0001776.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011040 Rroxscaffold_2G00117190 Rroxscaffold_7G00161130
rosa_rugosa	Rorug06G0356900 Rorug06G0357000 Rorug06G0357000
rosa_samantha	Rh1BG065500 Rh6AG227000 Rh6AG467900 Rh6BG432600 Rh6CG483100 Rh6DG469600
rosa_wichuraiana	Rw6G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	368
AccI	GTMKAC	1 cut(s)	867
AccII	CGCG	2 cut(s)	298, 762
AclWI	GGATC	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	133
AfiI	CCNNNNNNNGG	3 cut(s)	377, 639, 712
AgsI	TTSAA	9 cut(s)	44, 138, 290, 467, 647, 782, 859, 893, 942
AjnI	CCWGG	3 cut(s)	455, 764, 883
AjuI	GAANNNNNNNTTGG	2 cut(s)	118, 150
Alw21I	GWGCWC	2 cut(s)	705, 931
Alw26I	GTCTC	2 cut(s)	157, 818
AlwI	GGATC	1 cut(s)	362
AlwNI	CAGNNNCTG	1 cut(s)	383
Ama87I	CYCGRG	1 cut(s)	392
ApeKI	GCWGC	3 cut(s)	769, 839, 954
ApoI	RAATTY	1 cut(s)	133
AspLEI	GCGC	2 cut(s)	298, 764
AspS9I	GGNCC	2 cut(s)	302, 573
AsuC2I	CCSGG	1 cut(s)	590
AsuII	TTCGAA	1 cut(s)	130
AsuNHI	GCTAGC	1 cut(s)	410
AvaI	CYCGRG	1 cut(s)	392
AvaII	GGWCC	2 cut(s)	302, 573
AxyI	CCTNAGG	1 cut(s)	195
BauI	CACGAG	1 cut(s)	210
BbsI	GAAGAC	3 cut(s)	51, 410, 853
Bbv12I	GWGCWC	2 cut(s)	705, 931
BbvI	GCAGC	2 cut(s)	756, 826
BccI	CCATC	2 cut(s)	482, 523
BcgI	CGANNNNNNTGC	4 cut(s)	302, 336, 462, 496
BciT130I	CCWGG	3 cut(s)	457, 766, 885
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	2 cut(s)	157, 818
BfaI	CTAG	5 cut(s)	411, 843, 851, 923, 951
BfmI	CTRYAG	2 cut(s)	738, 753
BfuAI	ACCTGC	1 cut(s)	368
BisI	GCNGC	3 cut(s)	770, 840, 955
BlsI	GCNGC	3 cut(s)	771, 841, 956
Bme1390I	CCNGG	4 cut(s)	457, 590, 766, 885
Bme18I	GGWCC	2 cut(s)	302, 573
BmeT110I	CYCGRG	1 cut(s)	392
BmgT120I	GGNCC	2 cut(s)	302, 573
BmrFI	CCNGG	4 cut(s)	457, 590, 766, 885
BmsI	GCATC	2 cut(s)	781, 842
BmtI	GCTAGC	1 cut(s)	414
BpiI	GAAGAC	3 cut(s)	51, 410, 853
BpmI	CTGGAG	1 cut(s)	354
Bpu14I	TTCGAA	1 cut(s)	130
BpuMI	CCSGG	1 cut(s)	590
BsaBI	GATNNNNATC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	456
BsaWI	WCCGGW	1 cut(s)	679
Bsc4I	CCNNNNNNNGG	3 cut(s)	377, 639, 712
Bse1I	ACTGG	3 cut(s)	104, 356, 532
Bse21I	CCTNAGG	1 cut(s)	195
Bse3DI	GCAATG	3 cut(s)	480, 616, 800
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	3 cut(s)	457, 766, 885
BseDI	CCNNGG	1 cut(s)	456
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	3 cut(s)	377, 639, 712
BseMI	GCAATG	3 cut(s)	480, 616, 800
BseMII	CTCAG	2 cut(s)	86, 209
BseNI	ACTGG	3 cut(s)	104, 356, 532
BseRI	GAGGAG	1 cut(s)	803
BseXI	GCAGC	2 cut(s)	756, 826
BsgI	GTGCAG	1 cut(s)	704
Bsh1236I	CGCG	2 cut(s)	298, 762
Bsh1285I	CGRYCG	1 cut(s)	316
BsiEI	CGRYCG	1 cut(s)	316
BsiHKAI	GWGCWC	2 cut(s)	705, 931
BsiHKCI	CYCGRG	1 cut(s)	392
BsiSI	CCGG	2 cut(s)	590, 680
BslI	CCNNNNNNNGG	3 cut(s)	377, 639, 712
BsmAI	GTCTC	2 cut(s)	157, 818
BsmBI	CGTCTC	1 cut(s)	157
BsoBI	CYCGRG	1 cut(s)	392
Bsp119I	TTCGAA	1 cut(s)	130
Bsp1286I	GDGCHC	2 cut(s)	705, 931
Bsp143I	GATC	2 cut(s)	313, 354
BspCNI	CTCAG	2 cut(s)	87, 208
BspFNI	CGCG	2 cut(s)	298, 762
BspMAI	CTGCAG	1 cut(s)	757
BspMI	ACCTGC	1 cut(s)	368
BspOI	GCTAGC	1 cut(s)	414
BspPI	GGATC	1 cut(s)	362
BspT104I	TTCGAA	1 cut(s)	130
BsrDI	GCAATG	3 cut(s)	480, 616, 800
BsrI	ACTGG	3 cut(s)	104, 356, 532
BssECI	CCNNGG	1 cut(s)	456
BssMI	GATC	2 cut(s)	313, 354
BssSI	CACGAG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	210
Bst2UI	CCWGG	3 cut(s)	457, 766, 885
Bst4CI	ACNGT	2 cut(s)	676, 700
Bst6I	CTCTTC	2 cut(s)	160, 462
BstAPI	GCANNNNNTGC	2 cut(s)	722, 839
BstBI	TTCGAA	1 cut(s)	130
BstC8I	GCNNGC	4 cut(s)	321, 412, 607, 814
BstDEI	CTNAG	2 cut(s)	95, 195
BstENI	CCTNNNNNAGG	1 cut(s)	710
BstFNI	CGCG	2 cut(s)	298, 762
BstHHI	GCGC	2 cut(s)	298, 764
BstKTI	GATC	2 cut(s)	316, 357
BstMAI	GTCTC	2 cut(s)	157, 818
BstMBI	GATC	2 cut(s)	313, 354
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	5 cut(s)	452, 722, 761, 839, 926
BstNI	CCWGG	3 cut(s)	457, 766, 885
BstNSI	RCATGY	1 cut(s)	296
BstSCI	CCNGG	4 cut(s)	455, 588, 764, 883
BstSFI	CTRYAG	2 cut(s)	738, 753
BstUI	CGCG	2 cut(s)	298, 762
BstV1I	GCAGC	2 cut(s)	756, 826
BstV2I	GAAGAC	3 cut(s)	51, 410, 853
Bsu36I	CCTNAGG	1 cut(s)	195
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	22
BveI	ACCTGC	1 cut(s)	368
Cac8I	GCNNGC	4 cut(s)	321, 412, 607, 814
CaiI	CAGNNNCTG	1 cut(s)	383
CfoI	GCGC	2 cut(s)	298, 764
Cfr13I	GGNCC	2 cut(s)	302, 573
CviAII	CATG	2 cut(s)	293, 500
DdeI	CTNAG	2 cut(s)	95, 195
DpnI	GATC	2 cut(s)	315, 356
DpnII	GATC	2 cut(s)	313, 354
Eam1104I	CTCTTC	2 cut(s)	160, 462
EarI	CTCTTC	2 cut(s)	160, 462
Eco47I	GGWCC	2 cut(s)	302, 573
Eco81I	CCTNAGG	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	392
EcoNI	CCTNNNNNAGG	1 cut(s)	710
EcoO109I	RGGNCCY	2 cut(s)	302, 573
EcoRII	CCWGG	3 cut(s)	455, 764, 883
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	2 cut(s)	296, 503
FaiI	YATR	8 cut(s)	84, 263, 294, 362, 501, 586, 667, 911
FatI	CATG	2 cut(s)	292, 499
FblI	GTMKAC	1 cut(s)	867
Fnu4HI	GCNGC	3 cut(s)	770, 840, 955
Fsp4HI	GCNGC	3 cut(s)	770, 840, 955
FspBI	CTAG	5 cut(s)	411, 843, 851, 923, 951
GlaI	GCGC	2 cut(s)	297, 763
GluI	GCNGC	3 cut(s)	770, 840, 955
GsuI	CTGGAG	1 cut(s)	354
HapII	CCGG	2 cut(s)	590, 680
HhaI	GCGC	2 cut(s)	298, 764
Hin1II	CATG	2 cut(s)	296, 503
Hin6I	GCGC	2 cut(s)	296, 762
HinP1I	GCGC	2 cut(s)	296, 762
HindIII	AAGCTT	1 cut(s)	243
HinfI	GANTC	4 cut(s)	190, 286, 778, 938
HpaII	CCGG	2 cut(s)	590, 680
Hpy166II	GTNNAC	1 cut(s)	868
Hpy188I	TCNGA	3 cut(s)	96, 547, 777
Hpy188III	TCNNGA	4 cut(s)	371, 392, 554, 904
Hpy8I	GTNNAC	1 cut(s)	868
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	4 cut(s)	129, 617, 759, 887
HpyCH4III	ACNGT	2 cut(s)	676, 700
HpyCH4IV	ACGT	3 cut(s)	637, 807, 864
HpyCH4V	TGCA	7 cut(s)	427, 685, 709, 755, 772, 816, 833
HpyF10VI	GCNNNNNNNGC	5 cut(s)	452, 722, 761, 839, 926
HpyF3I	CTNAG	2 cut(s)	95, 195
HpySE526I	ACGT	3 cut(s)	637, 807, 864
Hsp92II	CATG	2 cut(s)	296, 503
HspAI	GCGC	2 cut(s)	296, 762
Kzo9I	GATC	2 cut(s)	313, 354
LmnI	GCTCC	8 cut(s)	185, 419, 443, 547, 708, 730, 790, 798
Lsp1109I	GCAGC	2 cut(s)	756, 826
LweI	GCATC	2 cut(s)	781, 842
MaeI	CTAG	5 cut(s)	411, 843, 851, 923, 951
MaeII	ACGT	3 cut(s)	637, 807, 864
MaeIII	GTNAC	2 cut(s)	205, 944
MalI	GATC	2 cut(s)	315, 356
MboI	GATC	2 cut(s)	313, 354
MhlI	GDGCHC	2 cut(s)	705, 931
MluCI	AATT	6 cut(s)	126, 133, 138, 184, 802, 961
MnlI	CCTC	9 cut(s)	57, 178, 204, 212, 293, 388, 463, 586, 781
MseI	TTAA	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	839
MspI	CCGG	2 cut(s)	590, 680
MspR9I	CCNGG	4 cut(s)	457, 590, 766, 885
MvaI	CCWGG	3 cut(s)	457, 766, 885
MvnI	CGCG	2 cut(s)	298, 762
MwoI	GCNNNNNNNGC	5 cut(s)	452, 722, 761, 839, 926
NciI	CCSGG	1 cut(s)	590
NdeII	GATC	2 cut(s)	313, 354
NheI	GCTAGC	1 cut(s)	410
NlaIII	CATG	2 cut(s)	296, 503
NspI	RCATGY	1 cut(s)	296
NspV	TTCGAA	1 cut(s)	130
PaeR7I	CTCGAG	1 cut(s)	392
PfeI	GAWTC	4 cut(s)	190, 286, 778, 938
PkrI	GCNGC	3 cut(s)	771, 841, 956
Ple19I	CGATCG	1 cut(s)	316
PpuMI	RGGWCCY	2 cut(s)	302, 573
Psp5II	RGGWCCY	2 cut(s)	302, 573
Psp6I	CCWGG	3 cut(s)	455, 764, 883
PspGI	CCWGG	3 cut(s)	455, 764, 883
PspPI	GGNCC	2 cut(s)	302, 573
PspPPI	RGGWCCY	2 cut(s)	302, 573
PstI	CTGCAG	1 cut(s)	757
PstNI	CAGNNNCTG	1 cut(s)	383
PvuI	CGATCG	1 cut(s)	316
PvuII	CAGCTG	1 cut(s)	839
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	3 cut(s)	770, 840, 955
Sau3AI	GATC	2 cut(s)	313, 354
Sau96I	GGNCC	2 cut(s)	302, 573
ScrFI	CCNGG	4 cut(s)	457, 590, 766, 885
SduI	GDGCHC	2 cut(s)	705, 931
SfaNI	GCATC	2 cut(s)	781, 842
SfcI	CTRYAG	2 cut(s)	738, 753
Sfr274I	CTCGAG	1 cut(s)	392
SfuI	TTCGAA	1 cut(s)	130
SinI	GGWCC	2 cut(s)	302, 573
SlaI	CTCGAG	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	6 cut(s)	126, 133, 138, 184, 802, 961
SspMI	CTAG	5 cut(s)	411, 843, 851, 923, 951
StyD4I	CCNGG	4 cut(s)	455, 588, 764, 883
TaaI	ACNGT	2 cut(s)	676, 700
TaiI	ACGT	3 cut(s)	640, 810, 867
TaqI	TCGA	5 cut(s)	130, 188, 312, 393, 903
TasI	AATT	6 cut(s)	126, 133, 138, 184, 802, 961
TfiI	GAWTC	4 cut(s)	190, 286, 778, 938
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TscAI	CASTG	1 cut(s)	29
TseI	GCWGC	3 cut(s)	769, 839, 954
TspDTI	ATGAA	5 cut(s)	57, 62, 147, 488, 491
TspGWI	ACGGA	3 cut(s)	139, 160, 270
TspRI	CASTG	1 cut(s)	29
VpaK11BI	GGWCC	2 cut(s)	302, 573
XagI	CCTNNNNNAGG	1 cut(s)	710
XapI	RAATTY	1 cut(s)	133
XceI	RCATGY	1 cut(s)	296
XhoI	CTCGAG	1 cut(s)	392
XmiI	GTMKAC	1 cut(s)	867
XspI	CTAG	5 cut(s)	411, 843, 851, 923, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.