Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001400

Physical Location & Seq

Genomic Coordinates Forward (+)

37443144 .. 37447236

Gene Structure 4093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G440800.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGTAATAGCTGGCCTTGTGCGATCCTCTCTGTGCAACACGTTTCCAATGGCACACCTTTCTCTTTCCTCTCTCTCCTCTGCTTCCTACTCACCTTCTTGTCCGCTAATTCACCGGCGAATCTTTGTGGTTGCTTCTAGAATCCAAGCTTCTTCTTCTTCTTCTTCATCAATCTCCAATTCGAATTCGACCCCCAAAGTCGTCGTGACCAGAGAGCGCGGCAAGAATGGCAAGCTCATCAGCTCTCTGGCCAAGCAGGGAATCAGCTGTTTGGAGCTTCCCCTCATTCAGCATACACGGGGGCCTGATCTGGATAAACTTCCTACTGTATTAAGCGATACTACATTTGACTGGATTGTCATAACTTCTCCTGAAGCGGGTTCAGTCTTCTTAGAGGCATGGAAGGCAGCTGGAACTCCAAATGTTAAGGTAGGTGTCGTGGGGGCTGGTACAGCAAGCATTTTTGAGGAAGTAATACAGTCATCAAAACAATCCCTCAATGTTGCCTTTGTGCCATCAAAAGCAACAGGCAAGGTTTTGGCTTCAGAGCTTCCTAAGAATGGTAATAAAAAGTGCACTGTTTTATATCCTGCTTCGGCAAAGGCCAGCAATGAGATTGAGGAAGGCCTGTCCAATCGTGGATTTGAGGTGACGAGGCTAAATACGTACACAACGGCCCCTGTTCATAATGTCGATCAAATGGTTTTGAAGCTGGCACTTTCGGCCCCTGTCATTGCAGTTGCTTCTCCTTCTGCCATTCGTGCCTGGGTCAATCTTATTTCAGAGTTAGAGCAATGGAACAATTCAGTTGCCTGTATTGGTGAGACAACTGCTAAGGCTGCTAAGAAATTAGGCTTGAGAAATGTTTACTACCCAGCAGACCCAGGTCTTGAAGGATGGGTGGGTAGCATCATTGAAGCGTTGCAAGCAAATGTCTGTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004852 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006778 GO:0006779 GO:0006780 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046502 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

HEM4

Protein Analysis

315

Amino Acids

33.22

Weight (kDa)

9.11

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26540 AT2G26540 AT2G26540
fragaria_vesca	FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880
malus_domestica	MD08G1106500.v1.1 MD15G1087100.v1.1
prunus_persica	Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1
pyrus_communis	pycom08g08790 pycom15g08200
rosa_chinensis	RchiOBHm_Chr6g0307161
rosa_laevigata	RLG00000004395 RLG00000010732
rosa_multiflora	Rmu_sc0001776.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011040 Rroxscaffold_2G00117190 Rroxscaffold_7G00161130
rosa_rugosa	Rorug06G0356900 Rorug06G0357000 Rorug06G0357000
rosa_samantha	Rh1BG065500 Rh6AG227000 Rh6AG467900 Rh6BG432600 Rh6CG483100 Rh6DG469600
rosa_wichuraiana	Rw6G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	356
AccII	CGCG	1 cut(s)	219
AciI	CCGC	3 cut(s)	104, 219, 377
AclWI	GGATC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	184
AcuI	CTGAAG	2 cut(s)	393, 528
AfaI	GTAC	2 cut(s)	451, 668
AfiI	CCNNNNNNNGG	2 cut(s)	377, 560
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	3 cut(s)	709, 893, 917
AjnI	CCWGG	2 cut(s)	764, 883
AluBI	AGCT	9 cut(s)	11, 149, 235, 243, 267, 277, 410, 550, 712
AluI	AGCT	9 cut(s)	11, 149, 235, 243, 267, 277, 410, 550, 712
Alw21I	GWGCWC	1 cut(s)	578
Alw26I	GTCTC	1 cut(s)	818
Alw44I	GTGCAC	1 cut(s)	574
AlwI	GGATC	1 cut(s)	18
AoxI	GGCC	7 cut(s)	13, 249, 302, 603, 625, 675, 723
ApaLI	GTGCAC	1 cut(s)	574
ApeKI	GCWGC	2 cut(s)	407, 839
ApoI	RAATTY	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	3 cut(s)	302, 676, 724
AsuHPI	GGTGA	4 cut(s)	84, 104, 661, 833
AsuII	TTCGAA	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	578
BalI	TGGCCA	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	379
Bbv12I	GWGCWC	1 cut(s)	578
BbvI	GCAGC	2 cut(s)	419, 826
BccI	CCATC	2 cut(s)	523, 891
BceAI	ACGGC	1 cut(s)	690
BciT130I	CCWGG	2 cut(s)	766, 885
BcoDI	GTCTC	1 cut(s)	818
BfaI	CTAG	1 cut(s)	138
BisI	GCNGC	3 cut(s)	220, 408, 840
BlsI	GCNGC	3 cut(s)	221, 409, 841
Bme1390I	CCNGG	2 cut(s)	766, 885
BmgT120I	GGNCC	3 cut(s)	302, 676, 724
BmiI	GGNNCC	3 cut(s)	303, 678, 726
BmrFI	CCNGG	2 cut(s)	766, 885
BmsI	GCATC	1 cut(s)	918
BoxI	GACNNNNGTC	1 cut(s)	885
BpiI	GAAGAC	1 cut(s)	379
Bpu10I	CCTNAGC	1 cut(s)	834
Bpu14I	TTCGAA	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	877
BsaAI	YACGTR	1 cut(s)	666
BsaJI	CCNNGG	2 cut(s)	765, 883
Bsc4I	CCNNNNNNNGG	2 cut(s)	377, 560
Bse118I	RCCGGY	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	356
Bse3DI	GCAATG	3 cut(s)	616, 732, 800
BseBI	CCWGG	2 cut(s)	766, 885
BseDI	CCNNGG	2 cut(s)	765, 883
BseGI	GGATG	1 cut(s)	902
BseLI	CCNNNNNNNGG	2 cut(s)	377, 560
BseMI	GCAATG	3 cut(s)	616, 732, 800
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	1 cut(s)	67
BseSI	GKGCMC	1 cut(s)	578
BseXI	GCAGC	2 cut(s)	419, 826
BseYI	CCCAGC	1 cut(s)	874
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	7 cut(s)	15, 251, 304, 605, 627, 677, 725
BsiHKAI	GWGCWC	1 cut(s)	578
BsiSI	CCGG	1 cut(s)	115
BslI	CCNNNNNNNGG	2 cut(s)	377, 560
BsmAI	GTCTC	1 cut(s)	818
BsnI	GGCC	7 cut(s)	15, 251, 304, 605, 627, 677, 725
Bsp119I	TTCGAA	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	578
Bsp143I	GATC	3 cut(s)	23, 307, 694
BspACI	CCGC	3 cut(s)	104, 219, 377
BspANI	GGCC	7 cut(s)	15, 251, 304, 605, 627, 677, 725
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	3 cut(s)	303, 678, 726
BspPI	GGATC	1 cut(s)	18
BspT104I	TTCGAA	1 cut(s)	182
BsrDI	GCAATG	3 cut(s)	616, 732, 800
BsrFI	RCCGGY	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	114
BssECI	CCNNGG	2 cut(s)	765, 883
BssMI	GATC	3 cut(s)	23, 307, 694
Bst2UI	CCWGG	2 cut(s)	766, 885
Bst4CI	ACNGT	3 cut(s)	328, 480, 580
BstBAI	YACGTR	1 cut(s)	666
BstBI	TTCGAA	1 cut(s)	182
BstC8I	GCNNGC	6 cut(s)	13, 233, 457, 607, 714, 927
BstDEI	CTNAG	4 cut(s)	391, 555, 834, 843
BstF5I	GGATG	1 cut(s)	902
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	3 cut(s)	26, 310, 697
BstMAI	GTCTC	1 cut(s)	818
BstMBI	GATC	3 cut(s)	23, 307, 694
BstMWI	GCNNNNNNNGC	7 cut(s)	228, 404, 452, 722, 761, 839, 926
BstNI	CCWGG	2 cut(s)	766, 885
BstPAI	GACNNNNGTC	1 cut(s)	885
BstSCI	CCNGG	2 cut(s)	764, 883
BstSLI	GKGCMC	1 cut(s)	578
BstSNI	TACGTA	1 cut(s)	666
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	419, 826
BstV2I	GAAGAC	1 cut(s)	379
BsuRI	GGCC	7 cut(s)	15, 251, 304, 605, 627, 677, 725
BtsCI	GGATG	1 cut(s)	902
BtsIMutI	CAGTG	1 cut(s)	576
Cac8I	GCNNGC	6 cut(s)	13, 233, 457, 607, 714, 927
CfoI	GCGC	1 cut(s)	219
Cfr10I	RCCGGY	1 cut(s)	114
Cfr13I	GGNCC	3 cut(s)	302, 676, 724
Csp6I	GTAC	2 cut(s)	450, 667
CviAII	CATG	1 cut(s)	399
CviQI	GTAC	2 cut(s)	450, 667
DdeI	CTNAG	4 cut(s)	391, 555, 834, 843
DpnI	GATC	3 cut(s)	25, 309, 696
DpnII	GATC	3 cut(s)	23, 307, 694
DrdI	GACNNNNNNGTC	1 cut(s)	356
DseDI	GACNNNNNNGTC	1 cut(s)	356
EaeI	YGGCCR	1 cut(s)	249
Eco105I	TACGTA	1 cut(s)	666
Eco147I	AGGCCT	1 cut(s)	627
Eco57I	CTGAAG	2 cut(s)	393, 528
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	184
EcoRII	CCWGG	2 cut(s)	764, 883
FaeI	CATG	1 cut(s)	402
FaiI	YATR	5 cut(s)	294, 362, 400, 586, 687
FatI	CATG	1 cut(s)	398
FauI	CCCGC	1 cut(s)	370
Fnu4HI	GCNGC	3 cut(s)	220, 408, 840
FokI	GGATG	1 cut(s)	909
Fsp4HI	GCNGC	3 cut(s)	220, 408, 840
FspBI	CTAG	1 cut(s)	138
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	3 cut(s)	220, 408, 840
GsaI	CCCAGC	1 cut(s)	878
HaeIII	GGCC	7 cut(s)	15, 251, 304, 605, 627, 677, 725
HapII	CCGG	1 cut(s)	115
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	1 cut(s)	402
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	147
HinfI	GANTC	3 cut(s)	120, 141, 261
HpaII	CCGG	1 cut(s)	115
HphI	GGTGA	4 cut(s)	84, 104, 661, 833
Hpy166II	GTNNAC	3 cut(s)	576, 669, 868
Hpy188I	TCNGA	2 cut(s)	547, 784
Hpy188III	TCNNGA	5 cut(s)	138, 205, 311, 371, 890
Hpy8I	GTNNAC	3 cut(s)	576, 669, 868
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	5 cut(s)	105, 397, 617, 759, 887
HpyCH4III	ACNGT	3 cut(s)	328, 480, 580
HpyCH4IV	ACGT	2 cut(s)	41, 665
HpyCH4V	TGCA	4 cut(s)	36, 576, 737, 925
HpyF10VI	GCNNNNNNNGC	7 cut(s)	228, 404, 452, 722, 761, 839, 926
HpyF3I	CTNAG	4 cut(s)	391, 555, 834, 843
HpySE526I	ACGT	2 cut(s)	41, 665
Hsp92II	CATG	1 cut(s)	402
HspAI	GCGC	1 cut(s)	217
Kzo9I	GATC	3 cut(s)	23, 307, 694
LmnI	GCTCC	1 cut(s)	274
Lsp1109I	GCAGC	2 cut(s)	419, 826
LweI	GCATC	1 cut(s)	918
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	2 cut(s)	41, 665
MaeIII	GTNAC	2 cut(s)	205, 649
MalI	GATC	3 cut(s)	25, 309, 696
MboI	GATC	3 cut(s)	23, 307, 694
MboII	GAAGA	6 cut(s)	144, 147, 150, 153, 156, 379
MhlI	GDGCHC	1 cut(s)	578
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	5 cut(s)	108, 178, 184, 802, 848
MluNI	TGGCCA	1 cut(s)	251
Mox20I	TGGCCA	1 cut(s)	251
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	2 cut(s)	332, 426
Msp20I	TGGCCA	1 cut(s)	251
MspA1I	CMGCKG	2 cut(s)	267, 410
MspI	CCGG	1 cut(s)	115
MspR9I	CCNGG	2 cut(s)	766, 885
MvaI	CCWGG	2 cut(s)	766, 885
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	7 cut(s)	228, 404, 452, 722, 761, 839, 926
NdeII	GATC	3 cut(s)	23, 307, 694
NlaIII	CATG	1 cut(s)	402
NlaIV	GGNNCC	3 cut(s)	303, 678, 726
NmuCI	GTSAC	2 cut(s)	205, 649
NspV	TTCGAA	1 cut(s)	182
PceI	AGGCCT	1 cut(s)	627
PfeI	GAWTC	3 cut(s)	120, 141, 261
PkrI	GCNGC	3 cut(s)	221, 409, 841
Ppu21I	YACGTR	1 cut(s)	666
PshAI	GACNNNNGTC	1 cut(s)	885
Psp6I	CCWGG	2 cut(s)	764, 883
PspFI	CCCAGC	1 cut(s)	874
PspGI	CCWGG	2 cut(s)	764, 883
PspN4I	GGNNCC	3 cut(s)	303, 678, 726
PspPI	GGNCC	3 cut(s)	302, 676, 724
PvuII	CAGCTG	2 cut(s)	267, 410
RsaI	GTAC	2 cut(s)	451, 668
RsaNI	GTAC	2 cut(s)	450, 667
SaqAI	TTAA	2 cut(s)	332, 426
SatI	GCNGC	3 cut(s)	220, 408, 840
Sau3AI	GATC	3 cut(s)	23, 307, 694
Sau96I	GGNCC	3 cut(s)	302, 676, 724
ScrFI	CCNGG	2 cut(s)	766, 885
SduI	GDGCHC	1 cut(s)	578
SfaNI	GCATC	1 cut(s)	918
SfuI	TTCGAA	1 cut(s)	182
SgrAI	CRCCGGYG	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	856
SmoI	CTYRAG	1 cut(s)	856
SnaBI	TACGTA	1 cut(s)	666
Sse9I	AATT	5 cut(s)	108, 178, 184, 802, 848
SseBI	AGGCCT	1 cut(s)	627
SsiI	CCGC	3 cut(s)	104, 219, 377
SspMI	CTAG	1 cut(s)	138
StuI	AGGCCT	1 cut(s)	627
StyD4I	CCNGG	2 cut(s)	764, 883
TaaI	ACNGT	3 cut(s)	328, 480, 580
TaiI	ACGT	2 cut(s)	44, 668
TaqI	TCGA	3 cut(s)	182, 188, 693
TasI	AATT	5 cut(s)	108, 178, 184, 802, 848
TauI	GCSGC	1 cut(s)	222
TfiI	GAWTC	3 cut(s)	120, 141, 261
Tru1I	TTAA	2 cut(s)	332, 426
Tru9I	TTAA	2 cut(s)	332, 426
TscAI	CASTG	1 cut(s)	583
TseFI	GTSAC	2 cut(s)	205, 649
TseI	GCWGC	2 cut(s)	407, 839
Tsp45I	GTSAC	2 cut(s)	205, 649
TspDTI	ATGAA	2 cut(s)	156, 674
TspRI	CASTG	1 cut(s)	583
VneI	GTGCAC	1 cut(s)	574
XapI	RAATTY	1 cut(s)	184
XbaI	TCTAGA	1 cut(s)	137
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.