Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001400

Physical Location & Seq

Genomic Coordinates Reverse (-)

14053128 .. 14057375

Gene Structure 4248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00011040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGAAGAAGAAAAAAAAGGTTCTATTGGGGCAATTGAGGCCTCTTAAAGATCTATTGGAGAGGGGCAATAGACCAACAGCCAAGGTTTTGGCTTCAGAGCTCCCTAAGAATAGGAAAGACAAAGGCAAAGTCCTATATCCTGCTTTTGCAAAAGCTGGCAATGAGATTGGTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004852 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006778 GO:0006779 GO:0006780 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046502 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

HEM4

Protein Analysis

58

Amino Acids

6.48

Weight (kDa)

10.54

Isoelectric Point (pI)

19.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26540 AT2G26540 AT2G26540
fragaria_vesca	FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880
malus_domestica	MD08G1106500.v1.1 MD15G1087100.v1.1
prunus_persica	Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1
pyrus_communis	pycom08g08790 pycom15g08200
rosa_chinensis	RchiOBHm_Chr6g0307161
rosa_laevigata	RLG00000004395 RLG00000010732
rosa_multiflora	Rmu_sc0001776.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011040 Rroxscaffold_2G00117190 Rroxscaffold_7G00161130
rosa_rugosa	Rorug06G0356900 Rorug06G0357000 Rorug06G0357000
rosa_samantha	Rh1BG065500 Rh6AG227000 Rh6AG467900 Rh6BG432600 Rh6CG483100 Rh6DG469600
rosa_wichuraiana	Rw6G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	78
AluBI	AGCT	2 cut(s)	100, 155
AluI	AGCT	2 cut(s)	100, 155
Alw21I	GWGCWC	1 cut(s)	102
AoxI	GGCC	1 cut(s)	38
ArsI	GACNNNNNNTTYG	2 cut(s)	114, 146
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	102
BglII	AGATCT	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	166
BshFI	GGCC	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	40
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	40
BsrDI	GCAATG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	105
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	49
BstXI	CCANNNNNNTGG	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	157
CviJI	RGCY	5 cut(s)	40, 80, 92, 100, 155
CviKI_1	RGCY	5 cut(s)	40, 80, 92, 100, 155
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
Ecl136II	GAGCTC	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	81
Eco147I	AGGCCT	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	81
FaiI	YATR	1 cut(s)	136
FriOI	GRGCYC	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	97
HpyCH4V	TGCA	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	105
LpnPI	CCDG	2 cut(s)	141, 153
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	2 cut(s)	16, 19
MfeI	CAATTG	1 cut(s)	32
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	1 cut(s)	32
MnlI	CCTC	3 cut(s)	30, 51, 54
MseI	TTAA	1 cut(s)	45
MunI	CAATTG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	1 cut(s)	49
PceI	AGGCCT	1 cut(s)	40
Psp124BI	GAGCTC	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	49
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	4 cut(s)	21, 87, 102, 157
SgeI	CNNG	3 cut(s)	94, 152, 168
Sse9I	AATT	1 cut(s)	32
SseBI	AGGCCT	1 cut(s)	40
SstI	GAGCTC	1 cut(s)	102
StuI	AGGCCT	1 cut(s)	40
StyI	CCWWGG	1 cut(s)	81
TasI	AATT	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.