Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001400

Physical Location & Seq

Genomic Coordinates Forward (+)

65307581 .. 65312531

Gene Structure 4951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG432600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCCAATGGCACAGATTTCCCTTTCCTCTTCCTCTTCTTGTCCTCTAATTCACCGGCGAATCTTTCTTCCTTGTGCTTTTTCAATCCAAGCTACCTCCACGACTTCAAATTCGCAGCCGCCGAAAGTCGTCGTCACCAGAGAGCGCGGCAAGAATGCCAAACTCATCACCTCTCTGGCGAAGCAGGGAATCAGCTGTTTGGAGCTTCCCCTCATCCAGCATACACGCGAGCCTGATCGAGATAGGCTTTCTACTGTATTGACTGATACTGCGTTTGACTGGATTGTCATAACTTCCCCTGAAGCTGGTTCAGTCTTTTTGGAGTCATGGAAGGCTGCCGGAACTCCAACTGTTAAGGTTGGTGTCGTCGGGGCTGGTACAGCAAGTGTCTTTGAGCAAGTACTGCAGTCATCAAAGAACTCCCTCAGTCTTGCCTTTGTGCCATCAAAAGCAACAGGCAAGGTTTTGGCTTCAGAGCTCCCTAAGAATAGGAAAGACAAATGCACAGTCCTATATCCTGCTTCTGCAAAAGCTGGCAATGAGATTGAGGAAGGCCTGTCCAATCGTGGATTTGAGGTCACAAGGCTAAATACGTACACCACGGTATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004852 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006778 GO:0006779 GO:0006780 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046502 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

HEM4

Protein Analysis

203

Amino Acids

21.87

Weight (kDa)

9.41

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEM4	PF02602	55 - 201	1.3e-27	Uroporphyrinogen-III synthase HemD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26540 AT2G26540 AT2G26540
fragaria_vesca	FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880
malus_domestica	MD08G1106500.v1.1 MD15G1087100.v1.1
prunus_persica	Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1
pyrus_communis	pycom08g08790 pycom15g08200
rosa_chinensis	RchiOBHm_Chr6g0307161
rosa_laevigata	RLG00000004395 RLG00000010732
rosa_multiflora	Rmu_sc0001776.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011040 Rroxscaffold_2G00117190 Rroxscaffold_7G00161130
rosa_rugosa	Rorug06G0356900 Rorug06G0357000 Rorug06G0357000
rosa_samantha	Rh1BG065500 Rh6AG227000 Rh6AG467900 Rh6BG432600 Rh6CG483100 Rh6DG469600
rosa_wichuraiana	Rw6G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	284
AccB7I	CCANNNNNTGG	1 cut(s)	606
AccII	CGCG	2 cut(s)	147, 228
AciI	CCGC	2 cut(s)	119, 147
AcsI	RAATTY	1 cut(s)	109
AcuI	CTGAAG	2 cut(s)	321, 456
AfaI	GTAC	3 cut(s)	379, 402, 596
AfiI	CCNNNNNNNGG	2 cut(s)	305, 606
AgsI	TTSAA	2 cut(s)	84, 108
AluBI	AGCT	6 cut(s)	92, 195, 205, 305, 478, 533
AluI	AGCT	6 cut(s)	92, 195, 205, 305, 478, 533
Alw21I	GWGCWC	1 cut(s)	480
AoxI	GGCC	1 cut(s)	553
ApeKI	GCWGC	2 cut(s)	115, 335
ApoI	RAATTY	1 cut(s)	109
ArsI	GACNNNNNNTTYG	4 cut(s)	94, 126, 492, 524
AspLEI	GCGC	1 cut(s)	147
AsuHPI	GGTGA	3 cut(s)	44, 127, 160
BanII	GRGCYC	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	2 cut(s)	127, 322
BccI	CCATC	1 cut(s)	451
BfmI	CTRYAG	1 cut(s)	404
BisI	GCNGC	4 cut(s)	116, 119, 148, 336
BlsI	GCNGC	4 cut(s)	117, 120, 149, 337
BmcAI	AGTACT	1 cut(s)	402
BsaAI	YACGTR	1 cut(s)	594
BsaJI	CCNNGG	1 cut(s)	600
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 606
Bse118I	RCCGGY	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	284
Bse3DI	GCAATG	1 cut(s)	544
BseDI	CCNNGG	1 cut(s)	600
BseGI	GGATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	2 cut(s)	305, 606
BseMI	GCAATG	1 cut(s)	544
BseMII	CTCAG	1 cut(s)	439
BseNI	ACTGG	1 cut(s)	284
BseXI	GCAGC	2 cut(s)	127, 322
Bsh1236I	CGCG	2 cut(s)	147, 228
BshFI	GGCC	1 cut(s)	555
BsiHKAI	GWGCWC	1 cut(s)	480
BsiSI	CCGG	2 cut(s)	55, 339
BslI	CCNNNNNNNGG	2 cut(s)	305, 606
BsmI	GAATGC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	555
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp143I	GATC	1 cut(s)	235
BspACI	CCGC	2 cut(s)	119, 147
BspANI	GGCC	1 cut(s)	555
BspCNI	CTCAG	1 cut(s)	438
BspFNI	CGCG	2 cut(s)	147, 228
BspMAI	CTGCAG	1 cut(s)	408
BsrDI	GCAATG	1 cut(s)	544
BsrFI	RCCGGY	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	284
BssAI	RCCGGY	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	600
BssMI	GATC	1 cut(s)	235
Bst4CI	ACNGT	4 cut(s)	256, 352, 508, 604
Bst6I	CTCTTC	2 cut(s)	34, 40
BstAPI	GCANNNNNTGC	1 cut(s)	403
BstBAI	YACGTR	1 cut(s)	594
BstC8I	GCNNGC	2 cut(s)	230, 535
BstDEI	CTNAG	2 cut(s)	425, 483
BstDSI	CCRYGG	1 cut(s)	600
BstF5I	GGATG	1 cut(s)	213
BstFNI	CGCG	2 cut(s)	147, 228
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 403
BstSFI	CTRYAG	1 cut(s)	404
BstSNI	TACGTA	1 cut(s)	594
BstUI	CGCG	2 cut(s)	147, 228
BstV1I	GCAGC	2 cut(s)	127, 322
BsuRI	GGCC	1 cut(s)	555
BtgI	CCRYGG	1 cut(s)	600
BtsCI	GGATG	1 cut(s)	213
Cac8I	GCNNGC	2 cut(s)	230, 535
CfoI	GCGC	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	54
Csp6I	GTAC	3 cut(s)	378, 401, 595
CviAII	CATG	1 cut(s)	327
CviQI	GTAC	3 cut(s)	378, 401, 595
DdeI	CTNAG	2 cut(s)	425, 483
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
DrdI	GACNNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	284
Eam1104I	CTCTTC	2 cut(s)	34, 40
EarI	CTCTTC	2 cut(s)	34, 40
Ecl136II	GAGCTC	1 cut(s)	478
Eco105I	TACGTA	1 cut(s)	594
Eco147I	AGGCCT	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	480
Eco53kI	GAGCTC	1 cut(s)	478
Eco57I	CTGAAG	2 cut(s)	321, 456
EcoICRI	GAGCTC	1 cut(s)	478
EcoT38I	GRGCYC	1 cut(s)	480
FaeI	CATG	1 cut(s)	330
FaiI	YATR	5 cut(s)	222, 290, 328, 514, 607
FatI	CATG	1 cut(s)	326
Fnu4HI	GCNGC	4 cut(s)	116, 119, 148, 336
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	4 cut(s)	116, 119, 148, 336
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	4 cut(s)	116, 119, 148, 336
HaeIII	GGCC	1 cut(s)	555
HapII	CCGG	2 cut(s)	55, 339
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	330
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HinfI	GANTC	3 cut(s)	60, 189, 323
HpaII	CCGG	2 cut(s)	55, 339
HphI	GGTGA	3 cut(s)	44, 127, 160
Hpy166II	GTNNAC	1 cut(s)	597
Hpy188I	TCNGA	1 cut(s)	475
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	1 cut(s)	597
Hpy99I	CGWCG	2 cut(s)	134, 371
HpyAV	CCTTC	2 cut(s)	325, 545
HpyCH4III	ACNGT	4 cut(s)	256, 352, 508, 604
HpyCH4IV	ACGT	1 cut(s)	593
HpyCH4V	TGCA	3 cut(s)	406, 504, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 403
HpyF3I	CTNAG	2 cut(s)	425, 483
HpySE526I	ACGT	1 cut(s)	593
Hsp92II	CATG	1 cut(s)	330
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	2 cut(s)	202, 483
Lsp1109I	GCAGC	2 cut(s)	127, 322
MaeII	ACGT	1 cut(s)	593
MaeIII	GTNAC	2 cut(s)	133, 577
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	3 cut(s)	21, 27, 59
MhlI	GDGCHC	1 cut(s)	480
MluCI	AATT	2 cut(s)	48, 109
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	371
MnlI	CCTC	9 cut(s)	37, 43, 54, 106, 181, 221, 434, 541, 568
MseI	TTAA	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	2 cut(s)	55, 339
Mva1269I	GAATGC	1 cut(s)	160
MvnI	CGCG	2 cut(s)	147, 228
MwoI	GCNNNNNNNGC	2 cut(s)	380, 403
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	1 cut(s)	330
NmuCI	GTSAC	2 cut(s)	133, 577
PceI	AGGCCT	1 cut(s)	555
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PctI	GAATGC	1 cut(s)	160
PfeI	GAWTC	2 cut(s)	60, 189
PflMI	CCANNNNNTGG	1 cut(s)	606
PkrI	GCNGC	4 cut(s)	117, 120, 149, 337
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
Ppu21I	YACGTR	1 cut(s)	594
Psp124BI	GAGCTC	1 cut(s)	480
PstI	CTGCAG	1 cut(s)	408
PvuII	CAGCTG	1 cut(s)	195
RsaI	GTAC	3 cut(s)	379, 402, 596
RsaNI	GTAC	3 cut(s)	378, 401, 595
SacI	GAGCTC	1 cut(s)	480
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	4 cut(s)	116, 119, 148, 336
Sau3AI	GATC	1 cut(s)	235
ScaI	AGTACT	1 cut(s)	402
SchI	GAGTC	1 cut(s)	332
SduI	GDGCHC	1 cut(s)	480
SfcI	CTRYAG	1 cut(s)	404
SgrAI	CRCCGGYG	1 cut(s)	54
SnaBI	TACGTA	1 cut(s)	594
Sse9I	AATT	2 cut(s)	48, 109
SseBI	AGGCCT	1 cut(s)	555
SsiI	CCGC	2 cut(s)	119, 147
SstI	GAGCTC	1 cut(s)	480
StuI	AGGCCT	1 cut(s)	555
TaaI	ACNGT	4 cut(s)	256, 352, 508, 604
TaiI	ACGT	1 cut(s)	596
TaqI	TCGA	1 cut(s)	238
TasI	AATT	2 cut(s)	48, 109
TatI	WGTACW	1 cut(s)	400
TauI	GCSGC	2 cut(s)	121, 150
TfiI	GAWTC	2 cut(s)	60, 189
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseFI	GTSAC	2 cut(s)	133, 577
TseI	GCWGC	2 cut(s)	115, 335
Tsp45I	GTSAC	2 cut(s)	133, 577
Van91I	CCANNNNNTGG	1 cut(s)	606
XapI	RAATTY	1 cut(s)	109
ZrmI	AGTACT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.