Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001400

Physical Location & Seq

Genomic Coordinates Reverse (-)

65035000 .. 65039907

Gene Structure 4908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG467900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCACAGATTTCTCTTTCCTCTTCCTCTCCCTACTCTCCTTCTTCTTGTCCTCTAATTCACCGGCGAATCTTTGTTCCTTGTGCTTTTTCAATCCAAGCTACCTCGACTTCAAATTCGCAGCCGCCGAAAGTCGTCGTCACCAGAGAGCGCGGCAAGAATGCCAAACTCATCACCTCTCTGGCGAAGCAGGGAATCAGCTGCTTGGAGCTTCCCCTCATCCAGCATACACGGGGGCCTGATCGAGATAGGCTTTCTACTGTATTGACTGATACTGCGTTTGACTGGATTGTCATAACTTCCCCTGAAGCTGGTTCAGTCTTTTTGGAGTCATGGAAGGCTGCCGGAACTCCAAATGTTAAGGTTGGTGTCGTCGGGGCTGGTACAGCAAGTGTCTTTGAGCAAGTACCGCAGTCATCAAAGAAATCCCTCAGTCTTGCCTTTGTGCCATCAAAAGCAACAGGCAAGGTTTTGGCTTCAGAGCTCCCTAAGAATAGGAAAGACAAATGCACAGTCCTATATCCTGCTTCTGCAAAAGCTGGCAATGAGATTGAGGAAGGCCTGTCCAATCGTGGATTTGAGGTCACAAGGCTAAATACGTACACCACGGTATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004852 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006778 GO:0006779 GO:0006780 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046502 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

HEM4

Protein Analysis

205

Amino Acids

21.99

Weight (kDa)

9.59

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEM4	PF02602	57 - 203	9e-28	Uroporphyrinogen-III synthase HemD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26540 AT2G26540 AT2G26540
fragaria_vesca	FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880
malus_domestica	MD08G1106500.v1.1 MD15G1087100.v1.1
prunus_persica	Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1
pyrus_communis	pycom08g08790 pycom15g08200
rosa_chinensis	RchiOBHm_Chr6g0307161
rosa_laevigata	RLG00000004395 RLG00000010732
rosa_multiflora	Rmu_sc0001776.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011040 Rroxscaffold_2G00117190 Rroxscaffold_7G00161130
rosa_rugosa	Rorug06G0356900 Rorug06G0357000 Rorug06G0357000
rosa_samantha	Rh1BG065500 Rh6AG227000 Rh6AG467900 Rh6BG432600 Rh6CG483100 Rh6DG469600
rosa_wichuraiana	Rw6G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
AccB7I	CCANNNNNTGG	1 cut(s)	612
AccII	CGCG	1 cut(s)	153
AciI	CCGC	3 cut(s)	125, 153, 410
AcsI	RAATTY	1 cut(s)	115
AcuI	CTGAAG	2 cut(s)	327, 462
AfaI	GTAC	3 cut(s)	385, 408, 602
AfiI	CCNNNNNNNGG	2 cut(s)	311, 612
AgsI	TTSAA	2 cut(s)	93, 114
AluBI	AGCT	6 cut(s)	101, 201, 211, 311, 484, 539
AluI	AGCT	6 cut(s)	101, 201, 211, 311, 484, 539
Alw21I	GWGCWC	1 cut(s)	486
AoxI	GGCC	2 cut(s)	236, 559
ApeKI	GCWGC	3 cut(s)	121, 201, 341
ApoI	RAATTY	1 cut(s)	115
ArsI	GACNNNNNNTTYG	4 cut(s)	100, 132, 498, 530
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	3 cut(s)	53, 133, 166
BanII	GRGCYC	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	3 cut(s)	133, 188, 328
BccI	CCATC	1 cut(s)	457
BisI	GCNGC	5 cut(s)	122, 125, 154, 202, 342
BlsI	GCNGC	5 cut(s)	123, 126, 155, 203, 343
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	1 cut(s)	237
BsaAI	YACGTR	1 cut(s)	600
BsaJI	CCNNGG	1 cut(s)	606
Bsc4I	CCNNNNNNNGG	2 cut(s)	311, 612
Bse118I	RCCGGY	1 cut(s)	63
Bse1I	ACTGG	1 cut(s)	290
Bse3DI	GCAATG	1 cut(s)	550
BseDI	CCNNGG	1 cut(s)	606
BseGI	GGATG	1 cut(s)	219
BseLI	CCNNNNNNNGG	2 cut(s)	311, 612
BseMI	GCAATG	1 cut(s)	550
BseMII	CTCAG	1 cut(s)	445
BseNI	ACTGG	1 cut(s)	290
BseXI	GCAGC	3 cut(s)	133, 188, 328
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	2 cut(s)	238, 561
BsiHKAI	GWGCWC	1 cut(s)	486
BsiSI	CCGG	2 cut(s)	64, 345
BslI	CCNNNNNNNGG	2 cut(s)	311, 612
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	2 cut(s)	238, 561
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp143I	GATC	1 cut(s)	241
BspACI	CCGC	3 cut(s)	125, 153, 410
BspANI	GGCC	2 cut(s)	238, 561
BspCNI	CTCAG	1 cut(s)	444
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	550
BsrFI	RCCGGY	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	290
BssAI	RCCGGY	1 cut(s)	63
BssECI	CCNNGG	1 cut(s)	606
BssMI	GATC	1 cut(s)	241
Bst4CI	ACNGT	3 cut(s)	262, 514, 610
Bst6I	CTCTTC	1 cut(s)	28
BstBAI	YACGTR	1 cut(s)	600
BstC8I	GCNNGC	1 cut(s)	541
BstDEI	CTNAG	2 cut(s)	431, 489
BstDSI	CCRYGG	1 cut(s)	606
BstF5I	GGATG	1 cut(s)	219
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 409
BstSNI	TACGTA	1 cut(s)	600
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	3 cut(s)	133, 188, 328
BsuRI	GGCC	2 cut(s)	238, 561
BtgI	CCRYGG	1 cut(s)	606
BtsCI	GGATG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	541
CfoI	GCGC	1 cut(s)	153
Cfr10I	RCCGGY	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	236
Csp6I	GTAC	3 cut(s)	384, 407, 601
CviAII	CATG	1 cut(s)	333
CviQI	GTAC	3 cut(s)	384, 407, 601
DdeI	CTNAG	2 cut(s)	431, 489
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
Ecl136II	GAGCTC	1 cut(s)	484
Eco105I	TACGTA	1 cut(s)	600
Eco147I	AGGCCT	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	486
Eco53kI	GAGCTC	1 cut(s)	484
Eco57I	CTGAAG	2 cut(s)	327, 462
EcoICRI	GAGCTC	1 cut(s)	484
EcoO109I	RGGNCCY	1 cut(s)	236
EcoT38I	GRGCYC	1 cut(s)	486
FaeI	CATG	1 cut(s)	336
FaiI	YATR	5 cut(s)	228, 296, 334, 520, 613
FatI	CATG	1 cut(s)	332
Fnu4HI	GCNGC	5 cut(s)	122, 125, 154, 202, 342
FokI	GGATG	1 cut(s)	206
FriOI	GRGCYC	1 cut(s)	486
Fsp4HI	GCNGC	5 cut(s)	122, 125, 154, 202, 342
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	5 cut(s)	122, 125, 154, 202, 342
HaeIII	GGCC	2 cut(s)	238, 561
HapII	CCGG	2 cut(s)	64, 345
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	336
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HinfI	GANTC	3 cut(s)	69, 195, 329
HpaII	CCGG	2 cut(s)	64, 345
HphI	GGTGA	3 cut(s)	53, 133, 166
Hpy166II	GTNNAC	1 cut(s)	603
Hpy188I	TCNGA	1 cut(s)	481
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	603
Hpy99I	CGWCG	2 cut(s)	140, 377
HpyAV	CCTTC	3 cut(s)	51, 331, 551
HpyCH4III	ACNGT	3 cut(s)	262, 514, 610
HpyCH4IV	ACGT	1 cut(s)	599
HpyCH4V	TGCA	2 cut(s)	510, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 409
HpyF3I	CTNAG	2 cut(s)	431, 489
HpySE526I	ACGT	1 cut(s)	599
Hsp92II	CATG	1 cut(s)	336
HspAI	GCGC	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	241
LmnI	GCTCC	2 cut(s)	208, 489
Lsp1109I	GCAGC	3 cut(s)	133, 188, 328
MaeII	ACGT	1 cut(s)	599
MaeIII	GTNAC	2 cut(s)	139, 583
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	2 cut(s)	15, 36
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	2 cut(s)	57, 115
MlyI	GAGTC	1 cut(s)	338
MnlI	CCTC	9 cut(s)	31, 37, 63, 115, 187, 227, 440, 547, 574
MseI	TTAA	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	201
MspI	CCGG	2 cut(s)	64, 345
Mva1269I	GAATGC	1 cut(s)	166
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	386, 409
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	1 cut(s)	336
NlaIV	GGNNCC	1 cut(s)	237
NmuCI	GTSAC	2 cut(s)	139, 583
PceI	AGGCCT	1 cut(s)	561
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PctI	GAATGC	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	69, 195
PflMI	CCANNNNNTGG	1 cut(s)	612
PkrI	GCNGC	5 cut(s)	123, 126, 155, 203, 343
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
Ppu21I	YACGTR	1 cut(s)	600
Psp124BI	GAGCTC	1 cut(s)	486
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	236
PvuII	CAGCTG	1 cut(s)	201
RsaI	GTAC	3 cut(s)	385, 408, 602
RsaNI	GTAC	3 cut(s)	384, 407, 601
SacI	GAGCTC	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	5 cut(s)	122, 125, 154, 202, 342
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	1 cut(s)	236
SchI	GAGTC	1 cut(s)	338
SduI	GDGCHC	1 cut(s)	486
SgrAI	CRCCGGYG	1 cut(s)	63
SnaBI	TACGTA	1 cut(s)	600
Sse9I	AATT	2 cut(s)	57, 115
SseBI	AGGCCT	1 cut(s)	561
SsiI	CCGC	3 cut(s)	125, 153, 410
SstI	GAGCTC	1 cut(s)	486
StuI	AGGCCT	1 cut(s)	561
TaaI	ACNGT	3 cut(s)	262, 514, 610
TaiI	ACGT	1 cut(s)	602
TaqI	TCGA	2 cut(s)	107, 244
TasI	AATT	2 cut(s)	57, 115
TauI	GCSGC	2 cut(s)	127, 156
TfiI	GAWTC	2 cut(s)	69, 195
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TseFI	GTSAC	2 cut(s)	139, 583
TseI	GCWGC	3 cut(s)	121, 201, 341
Tsp45I	GTSAC	2 cut(s)	139, 583
Van91I	CCANNNNNTGG	1 cut(s)	612
XapI	RAATTY	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.