Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001400

Physical Location & Seq

Genomic Coordinates Reverse (-)

64544670 .. 64549732

Gene Structure 5063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G040770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGCCAAACTCATCACCTCTCTGGCGAAGCAGGGAATCAGCTGTTTGGAGCTTCCCCTCATCCCATACACGGGGGCCTGATCGAGATAGGCTTTCTACTGTATTGACTGATACTGCGTTTGACTGGATTGTCATAACTTCCCCTGAAGCTGGTTCAGTCTTTTTGGAGTCATGGAAGGCTGCTGGAACTCCAAATGTTAAGGTTGGTGTCGTCGGGGCTGGTACAGCAACTGTCTTTGAGCAAGTACTGCAGTCATCAAAGAAATCCCTCAGTCTTGCCTTTGTGCCATCAAAAGCAACAGGCAAGGTTTTGGCTTCAGAGCTCCCTAAGAATAGGAAAGACAAATGCACAGTCCTATATCCTGCTTCTGCAAAAGCTGGCAATGAGATTGAGGAAGGCCTGTCCAATCGTGGATTTGAGGTCACAAGGCTAAATACGTACACCACGGGACCTGTTGACCATGTCGATCAAATGGTTTTGAAGCAGGCTCTTTCTGCCCCTGTTGTTGCAGTTGCTTCTCCTTCTGCAGTTCGTGCTTGGGTCAATCTTATTTCTGAGTCTGAGCAATGGAACAATTCGGTTGCCTGTATTGGTGAGACAACTGCCAAGGCTGCTAGGAGATTAGGCTTGAGAAATGTTTACTATCCCGTGCAACCAGGTCTTGAAGGATGGGTGGATAGCATTGTTGAAGCATTGGGAGCAAATGTCCATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004852 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006778 GO:0006779 GO:0006780 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046502 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

HEM4

Protein Analysis

238

Amino Acids

25.55

Weight (kDa)

8.53

Isoelectric Point (pI)

46.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEM4	PF02602	14 - 225	5.6e-41	Uroporphyrinogen-III synthase HemD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26540 AT2G26540 AT2G26540
fragaria_vesca	FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880
malus_domestica	MD08G1106500.v1.1 MD15G1087100.v1.1
prunus_persica	Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1
pyrus_communis	pycom08g08790 pycom15g08200
rosa_chinensis	RchiOBHm_Chr6g0307161
rosa_laevigata	RLG00000004395 RLG00000010732
rosa_multiflora	Rmu_sc0001776.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011040 Rroxscaffold_2G00117190 Rroxscaffold_7G00161130
rosa_rugosa	Rorug06G0356900 Rorug06G0357000 Rorug06G0357000
rosa_samantha	Rh1BG065500 Rh6AG227000 Rh6AG467900 Rh6BG432600 Rh6CG483100 Rh6DG469600
rosa_wichuraiana	Rw6G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AcuI	CTGAAG	2 cut(s)	165, 300
AfaI	GTAC	3 cut(s)	223, 246, 440
AfiI	CCNNNNNNNGG	3 cut(s)	69, 70, 149
AgsI	TTSAA	3 cut(s)	481, 665, 689
AjnI	CCWGG	1 cut(s)	655
AluBI	AGCT	5 cut(s)	41, 51, 149, 322, 377
AluI	AGCT	5 cut(s)	41, 51, 149, 322, 377
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	590
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	2 cut(s)	74, 397
ApeKI	GCWGC	2 cut(s)	179, 611
ArsI	GACNNNNNNTTYG	2 cut(s)	336, 368
AspS9I	GGNCC	2 cut(s)	74, 449
AsuHPI	GGTGA	2 cut(s)	6, 605
AvaII	GGWCC	1 cut(s)	449
BanII	GRGCYC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	166, 598
BccI	CCATC	2 cut(s)	295, 663
BciT130I	CCWGG	1 cut(s)	657
BcoDI	GTCTC	1 cut(s)	590
BfaI	CTAG	1 cut(s)	615
BfmI	CTRYAG	2 cut(s)	248, 525
BisI	GCNGC	2 cut(s)	180, 612
BlsI	GCNGC	2 cut(s)	181, 613
BmcAI	AGTACT	1 cut(s)	246
Bme1390I	CCNGG	1 cut(s)	657
Bme18I	GGWCC	1 cut(s)	449
BmgT120I	GGNCC	2 cut(s)	74, 449
BmiI	GGNNCC	2 cut(s)	75, 450
BmrFI	CCNGG	1 cut(s)	657
BpuEI	CTTGAG	1 cut(s)	649
BsaAI	YACGTR	1 cut(s)	438
BsaJI	CCNNGG	2 cut(s)	444, 606
BsaXI	ACNNNNNCTCC	1 cut(s)	690
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 70, 149
Bse1I	ACTGG	1 cut(s)	128
Bse3DI	GCAATG	2 cut(s)	388, 572
BseBI	CCWGG	1 cut(s)	657
BseDI	CCNNGG	2 cut(s)	444, 606
BseGI	GGATG	2 cut(s)	59, 674
BseLI	CCNNNNNNNGG	3 cut(s)	69, 70, 149
BseMI	GCAATG	2 cut(s)	388, 572
BseMII	CTCAG	3 cut(s)	283, 546, 552
BseNI	ACTGG	1 cut(s)	128
BseXI	GCAGC	2 cut(s)	166, 598
BshFI	GGCC	2 cut(s)	76, 399
BsiHKAI	GWGCWC	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	462
BslI	CCNNNNNNNGG	3 cut(s)	69, 70, 149
BsmAI	GTCTC	1 cut(s)	590
BsmFI	GGGAC	1 cut(s)	462
BsnI	GGCC	2 cut(s)	76, 399
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	79, 466
BspANI	GGCC	2 cut(s)	76, 399
BspCNI	CTCAG	3 cut(s)	282, 547, 553
BspLI	GGNNCC	2 cut(s)	75, 450
BspMAI	CTGCAG	2 cut(s)	252, 529
BsrDI	GCAATG	2 cut(s)	388, 572
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	444, 606
BssMI	GATC	2 cut(s)	79, 466
BssT1I	CCWWGG	1 cut(s)	606
Bst2UI	CCWGG	1 cut(s)	657
Bst4CI	ACNGT	3 cut(s)	100, 232, 352
BstAPI	GCANNNNNTGC	2 cut(s)	247, 533
BstBAI	YACGTR	1 cut(s)	438
BstC8I	GCNNGC	2 cut(s)	379, 486
BstDEI	CTNAG	4 cut(s)	269, 327, 555, 561
BstDSI	CCRYGG	1 cut(s)	444
BstF5I	GGATG	2 cut(s)	59, 674
BstKTI	GATC	2 cut(s)	82, 469
BstMAI	GTCTC	1 cut(s)	590
BstMBI	GATC	2 cut(s)	79, 466
BstMWI	GCNNNNNNNGC	6 cut(s)	224, 247, 494, 533, 611, 698
BstNI	CCWGG	1 cut(s)	657
BstSCI	CCNGG	1 cut(s)	655
BstSFI	CTRYAG	2 cut(s)	248, 525
BstSNI	TACGTA	1 cut(s)	438
BstV1I	GCAGC	2 cut(s)	166, 598
BsuRI	GGCC	2 cut(s)	76, 399
BtgI	CCRYGG	1 cut(s)	444
BtsCI	GGATG	2 cut(s)	59, 674
Cac8I	GCNNGC	2 cut(s)	379, 486
CaiI	CAGNNNCTG	1 cut(s)	230
Cfr13I	GGNCC	2 cut(s)	74, 449
CsiI	ACCWGGT	1 cut(s)	655
Csp6I	GTAC	3 cut(s)	222, 245, 439
CviAII	CATG	2 cut(s)	171, 461
CviQI	GTAC	3 cut(s)	222, 245, 439
DdeI	CTNAG	4 cut(s)	269, 327, 555, 561
DpnI	GATC	2 cut(s)	81, 468
DpnII	GATC	2 cut(s)	79, 466
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Ecl136II	GAGCTC	1 cut(s)	322
Eco105I	TACGTA	1 cut(s)	438
Eco130I	CCWWGG	1 cut(s)	606
Eco147I	AGGCCT	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	449
Eco53kI	GAGCTC	1 cut(s)	322
Eco57I	CTGAAG	2 cut(s)	165, 300
EcoICRI	GAGCTC	1 cut(s)	322
EcoO109I	RGGNCCY	2 cut(s)	74, 449
EcoRII	CCWGG	1 cut(s)	655
EcoT14I	CCWWGG	1 cut(s)	606
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	606
FaeI	CATG	2 cut(s)	174, 464
FaiI	YATR	5 cut(s)	66, 134, 172, 358, 462
FaqI	GGGAC	1 cut(s)	462
FatI	CATG	2 cut(s)	170, 460
Fnu4HI	GCNGC	2 cut(s)	180, 612
FokI	GGATG	2 cut(s)	46, 681
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	2 cut(s)	180, 612
FspBI	CTAG	1 cut(s)	615
GluI	GCNGC	2 cut(s)	180, 612
HaeIII	GGCC	2 cut(s)	76, 399
Hin1II	CATG	2 cut(s)	174, 464
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	3 cut(s)	35, 167, 557
HphI	GGTGA	2 cut(s)	6, 605
Hpy166II	GTNNAC	3 cut(s)	441, 457, 640
Hpy188I	TCNGA	3 cut(s)	319, 556, 562
Hpy188III	TCNNGA	2 cut(s)	83, 662
Hpy8I	GTNNAC	3 cut(s)	441, 457, 640
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	4 cut(s)	169, 389, 531, 659
HpyCH4III	ACNGT	3 cut(s)	100, 232, 352
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	6 cut(s)	250, 348, 371, 509, 527, 652
HpyF10VI	GCNNNNNNNGC	6 cut(s)	224, 247, 494, 533, 611, 698
HpyF3I	CTNAG	4 cut(s)	269, 327, 555, 561
HpySE526I	ACGT	1 cut(s)	437
Hsp92II	CATG	2 cut(s)	174, 464
Kzo9I	GATC	2 cut(s)	79, 466
LmnI	GCTCC	3 cut(s)	48, 327, 698
Lsp1109I	GCAGC	2 cut(s)	166, 598
MabI	ACCWGGT	1 cut(s)	655
MaeI	CTAG	1 cut(s)	615
MaeII	ACGT	1 cut(s)	437
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	2 cut(s)	81, 468
MboI	GATC	2 cut(s)	79, 466
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	1 cut(s)	574
MlyI	GAGTC	2 cut(s)	176, 566
MnlI	CCTC	5 cut(s)	27, 67, 278, 385, 412
MseI	TTAA	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	657
MvaI	CCWGG	1 cut(s)	657
MwoI	GCNNNNNNNGC	6 cut(s)	224, 247, 494, 533, 611, 698
NdeII	GATC	2 cut(s)	79, 466
NlaIII	CATG	2 cut(s)	174, 464
NlaIV	GGNNCC	2 cut(s)	75, 450
NmuCI	GTSAC	1 cut(s)	421
PceI	AGGCCT	1 cut(s)	399
PfeI	GAWTC	1 cut(s)	35
PflFI	GACNNNGTC	1 cut(s)	461
PkrI	GCNGC	2 cut(s)	181, 613
PleI	GAGTC	2 cut(s)	175, 565
PpsI	GAGTC	2 cut(s)	175, 565
Ppu21I	YACGTR	1 cut(s)	438
PpuMI	RGGWCCY	1 cut(s)	449
Psp124BI	GAGCTC	1 cut(s)	324
Psp5II	RGGWCCY	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	655
PspN4I	GGNNCC	2 cut(s)	75, 450
PspPI	GGNCC	2 cut(s)	74, 449
PspPPI	RGGWCCY	1 cut(s)	449
PstI	CTGCAG	2 cut(s)	252, 529
PstNI	CAGNNNCTG	1 cut(s)	230
PsyI	GACNNNGTC	1 cut(s)	461
PvuII	CAGCTG	1 cut(s)	41
RsaI	GTAC	3 cut(s)	223, 246, 440
RsaNI	GTAC	3 cut(s)	222, 245, 439
SacI	GAGCTC	1 cut(s)	324
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	2 cut(s)	180, 612
Sau3AI	GATC	2 cut(s)	79, 466
Sau96I	GGNCC	2 cut(s)	74, 449
ScaI	AGTACT	1 cut(s)	246
SchI	GAGTC	2 cut(s)	176, 566
ScrFI	CCNGG	1 cut(s)	657
SduI	GDGCHC	1 cut(s)	324
SexAI	ACCWGGT	1 cut(s)	655
SfcI	CTRYAG	2 cut(s)	248, 525
SinI	GGWCC	1 cut(s)	449
SmlI	CTYRAG	1 cut(s)	628
SmoI	CTYRAG	1 cut(s)	628
SnaBI	TACGTA	1 cut(s)	438
Sse9I	AATT	1 cut(s)	574
SseBI	AGGCCT	1 cut(s)	399
SspMI	CTAG	1 cut(s)	615
SstI	GAGCTC	1 cut(s)	324
StuI	AGGCCT	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	655
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	3 cut(s)	100, 232, 352
TaiI	ACGT	1 cut(s)	440
TaqI	TCGA	2 cut(s)	82, 465
TasI	AATT	1 cut(s)	574
TatI	WGTACW	1 cut(s)	244
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	2 cut(s)	179, 611
Tsp45I	GTSAC	1 cut(s)	421
Tth111I	GACNNNGTC	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	449
XspI	CTAG	1 cut(s)	615
ZrmI	AGTACT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.