Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001400

Physical Location & Seq

Genomic Coordinates Forward (+)

6061982 .. 6065844

Gene Structure 3863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1087100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCACACCTTTCTCTCTCCTCTCTCTCTCCTCCTATTTCCTACCCACCTTCTTGTCCGCCACTTCAACGGCGAACCTTCGTGGTTGCTTCCAGAATCCAAGTGGCCTCCGTAACTTCCACCTCCAATTCACACGCGCCGCCGAGAGTCGTCGTGACTAGAGAGCACGGCAAGAACAGCAAGCTCATCGCCTCCCTGGCCAAGCAGGGAATCAGCTGTTTGGAGCTTCCGCTCATTCAGCATACACGGGGGCCTGATCTGGATAGGCTTTGTACAGTGTTAAGTGATACTACATTTGATTGGATTGTCATAACTTCCCCTGAAGCGGGTTCAGTCTTCTTAGAGGCCTGGAAGGCTGCTGGAAGTCCAAATGTTACAGTAGGGGTTGTGGGGGCTGGTACAGCAAGCATATTTGAGGAAGTAGTACAGTCCTCAAAGCGATCCCTCAACATTGCCTTTGTGCCATCCAAAGCAACAGGCAAGGTTTTGGCTTCAGAGCTTCCTAAGAATGGGATTGAAAAATGCACTGTTTTATATCCTGCTTCTGCGAAGGCCAGCAATGAGATTGAGGAAGGCCTGTCCAATCGTGGGTTTGAGGTCACAAGGCTAAATACATACACAACGGGACCTGTCCATCGTGTCGACCAAACAGTTTTAAAGCAGGCACTCACCGCTCCTGTCATAGCAGTTGCTTCTCCTTCAGCTATTCGTGCCTGGGTCGGTCTTATTTCAGAGCCAGAGAAATGGAGCAATTCAATTGCCTGTATTGGTCAGACAACTGCTAAGGCTGCTAAGAAATTAGGCCTGAGAAATGTTTACTACCCGGCAAACCCAGGTCTTGAAGGGTGGGTGGGTAGCATACTTGAAGCGTTGCAAGCAAATGTACATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004852 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006778 GO:0006779 GO:0006780 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046502 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

HEM4

Protein Analysis

298

Amino Acids

31.52

Weight (kDa)

9.22

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEM4	PF02602	61 - 284	1.7e-44	Uroporphyrinogen-III synthase HemD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26540 AT2G26540 AT2G26540
fragaria_vesca	FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880
malus_domestica	MD08G1106500.v1.1 MD15G1087100.v1.1
prunus_persica	Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1
pyrus_communis	pycom08g08790 pycom15g08200
rosa_chinensis	RchiOBHm_Chr6g0307161
rosa_laevigata	RLG00000004395 RLG00000010732
rosa_multiflora	Rmu_sc0001776.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011040 Rroxscaffold_2G00117190 Rroxscaffold_7G00161130
rosa_rugosa	Rorug06G0356900 Rorug06G0357000 Rorug06G0357000
rosa_samantha	Rh1BG065500 Rh6AG227000 Rh6AG467900 Rh6BG432600 Rh6CG483100 Rh6DG469600
rosa_wichuraiana	Rw6G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	232, 674
AccI	GTMKAC	1 cut(s)	642
AccII	CGCG	1 cut(s)	137
AciI	CCGC	5 cut(s)	59, 140, 230, 326, 672
AclWI	GGATC	1 cut(s)	435
AcoI	YGGCCR	1 cut(s)	198
AcuI	CTGAAG	3 cut(s)	342, 477, 684
AfaI	GTAC	4 cut(s)	274, 400, 426, 885
AfiI	CCNNNNNNNGG	4 cut(s)	325, 326, 509, 588
AgsI	TTSAA	5 cut(s)	68, 518, 756, 842, 866
AjnI	CCWGG	4 cut(s)	195, 347, 713, 832
AluBI	AGCT	5 cut(s)	184, 216, 226, 499, 704
AluI	AGCT	5 cut(s)	184, 216, 226, 499, 704
Alw21I	GWGCWC	1 cut(s)	168
AlwI	GGATC	1 cut(s)	435
AoxI	GGCC	7 cut(s)	105, 198, 251, 345, 552, 574, 802
ApeKI	GCWGC	2 cut(s)	356, 788
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	2 cut(s)	251, 626
AsuC2I	CCSGG	1 cut(s)	824
AsuHPI	GGTGA	1 cut(s)	661
AvaII	GGWCC	1 cut(s)	626
BalI	TGGCCA	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	343, 775
BccI	CCATC	2 cut(s)	472, 642
BceAI	ACGGC	2 cut(s)	86, 184
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BciT130I	CCWGG	4 cut(s)	197, 349, 715, 834
BcnI	CCSGG	1 cut(s)	824
BfaI	CTAG	1 cut(s)	159
BglI	GCCNNNNNGGC	2 cut(s)	197, 353
BisI	GCNGC	3 cut(s)	140, 357, 789
BlsI	GCNGC	3 cut(s)	141, 358, 790
Bme1390I	CCNGG	5 cut(s)	197, 349, 715, 824, 834
Bme18I	GGWCC	1 cut(s)	626
BmgT120I	GGNCC	2 cut(s)	251, 626
BmiI	GGNNCC	2 cut(s)	252, 627
BmrFI	CCNGG	5 cut(s)	197, 349, 715, 824, 834
BpiI	GAAGAC	1 cut(s)	328
Bpu10I	CCTNAGC	1 cut(s)	783
BpuMI	CCSGG	1 cut(s)	824
BsaJI	CCNNGG	3 cut(s)	195, 714, 832
Bsc4I	CCNNNNNNNGG	4 cut(s)	325, 326, 509, 588
Bse3DI	GCAATG	2 cut(s)	450, 565
BseBI	CCWGG	4 cut(s)	197, 349, 715, 834
BseDI	CCNNGG	3 cut(s)	195, 714, 832
BseGI	GGATG	1 cut(s)	464
BseLI	CCNNNNNNNGG	4 cut(s)	325, 326, 509, 588
BseMI	GCAATG	2 cut(s)	450, 565
BseMII	CTCAG	1 cut(s)	797
BseRI	GAGGAG	2 cut(s)	10, 21
BseXI	GCAGC	2 cut(s)	343, 775
Bsh1236I	CGCG	1 cut(s)	137
BshFI	GGCC	7 cut(s)	107, 200, 253, 347, 554, 576, 804
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	824
BslFI	GGGAC	1 cut(s)	639
BslI	CCNNNNNNNGG	4 cut(s)	325, 326, 509, 588
BsmFI	GGGAC	1 cut(s)	639
BsnI	GGCC	7 cut(s)	107, 200, 253, 347, 554, 576, 804
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp1407I	TGTACA	2 cut(s)	272, 883
Bsp143I	GATC	2 cut(s)	256, 440
BspACI	CCGC	5 cut(s)	59, 140, 230, 326, 672
BspANI	GGCC	7 cut(s)	107, 200, 253, 347, 554, 576, 804
BspCNI	CTCAG	1 cut(s)	798
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	2 cut(s)	252, 627
BspPI	GGATC	1 cut(s)	435
BsrBI	CCGCTC	2 cut(s)	232, 674
BsrDI	GCAATG	2 cut(s)	450, 565
BsrGI	TGTACA	2 cut(s)	272, 883
BssECI	CCNNGG	3 cut(s)	195, 714, 832
BssMI	GATC	2 cut(s)	256, 440
Bst2UI	CCWGG	4 cut(s)	197, 349, 715, 834
Bst4CI	ACNGT	5 cut(s)	277, 379, 429, 529, 652
BstAUI	TGTACA	2 cut(s)	272, 883
BstC8I	GCNNGC	5 cut(s)	182, 406, 556, 663, 876
BstDEI	CTNAG	5 cut(s)	340, 504, 783, 792, 806
BstF5I	GGATG	1 cut(s)	464
BstFNI	CGCG	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	2 cut(s)	259, 443
BstMBI	GATC	2 cut(s)	256, 440
BstMWI	GCNNNNNNNGC	9 cut(s)	177, 197, 238, 353, 401, 671, 710, 788, 875
BstNI	CCWGG	4 cut(s)	197, 349, 715, 834
BstSCI	CCNGG	5 cut(s)	195, 347, 713, 822, 832
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	2 cut(s)	343, 775
BstV2I	GAAGAC	1 cut(s)	328
BstXI	CCANNNNNNTGG	1 cut(s)	744
BsuRI	GGCC	7 cut(s)	107, 200, 253, 347, 554, 576, 804
BtgZI	GCGATG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	464
BtsIMutI	CAGTG	2 cut(s)	282, 525
Cac8I	GCNNGC	5 cut(s)	182, 406, 556, 663, 876
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	251, 626
Csp6I	GTAC	4 cut(s)	273, 399, 425, 884
CviQI	GTAC	4 cut(s)	273, 399, 425, 884
DdeI	CTNAG	5 cut(s)	340, 504, 783, 792, 806
DpnI	GATC	2 cut(s)	258, 442
DpnII	GATC	2 cut(s)	256, 440
DraI	TTTAAA	1 cut(s)	657
EaeI	YGGCCR	1 cut(s)	198
EciI	GGCGGA	1 cut(s)	48
Eco147I	AGGCCT	3 cut(s)	347, 576, 804
Eco47I	GGWCC	1 cut(s)	626
Eco57I	CTGAAG	3 cut(s)	342, 477, 684
EcoO109I	RGGNCCY	2 cut(s)	251, 626
EcoRII	CCWGG	4 cut(s)	195, 347, 713, 832
FaiI	YATR	7 cut(s)	243, 311, 410, 535, 616, 683, 860
FaqI	GGGAC	1 cut(s)	639
FauI	CCCGC	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	642
Fnu4HI	GCNGC	3 cut(s)	140, 357, 789
FokI	GGATG	1 cut(s)	451
Fsp4HI	GCNGC	3 cut(s)	140, 357, 789
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	3 cut(s)	140, 357, 789
HaeIII	GGCC	7 cut(s)	107, 200, 253, 347, 554, 576, 804
HapII	CCGG	1 cut(s)	824
HhaI	GCGC	1 cut(s)	139
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	3 cut(s)	96, 147, 210
HpaII	CCGG	1 cut(s)	824
HphI	GGTGA	1 cut(s)	661
Hpy166II	GTNNAC	2 cut(s)	643, 817
Hpy188I	TCNGA	3 cut(s)	496, 733, 774
Hpy188III	TCNNGA	4 cut(s)	93, 154, 260, 839
Hpy8I	GTNNAC	2 cut(s)	643, 817
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	7 cut(s)	60, 88, 346, 544, 566, 708, 836
HpyCH4III	ACNGT	5 cut(s)	277, 379, 429, 529, 652
HpyCH4V	TGCA	2 cut(s)	525, 874
HpyF10VI	GCNNNNNNNGC	9 cut(s)	177, 197, 238, 353, 401, 671, 710, 788, 875
HpyF3I	CTNAG	5 cut(s)	340, 504, 783, 792, 806
HspAI	GCGC	1 cut(s)	137
Kzo9I	GATC	2 cut(s)	256, 440
LmnI	GCTCC	3 cut(s)	223, 679, 747
Lsp1109I	GCAGC	2 cut(s)	343, 775
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	4 cut(s)	112, 154, 373, 598
MalI	GATC	2 cut(s)	258, 442
MbiI	CCGCTC	2 cut(s)	232, 674
MboI	GATC	2 cut(s)	256, 440
MboII	GAAGA	1 cut(s)	328
MfeI	CAATTG	1 cut(s)	756
MhlI	GDGCHC	1 cut(s)	168
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	4 cut(s)	127, 751, 756, 797
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	1 cut(s)	156
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	2 cut(s)	281, 656
Msp20I	TGGCCA	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	216
MspI	CCGG	1 cut(s)	824
MspR9I	CCNGG	5 cut(s)	197, 349, 715, 824, 834
MunI	CAATTG	1 cut(s)	756
MvaI	CCWGG	4 cut(s)	197, 349, 715, 834
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	9 cut(s)	177, 197, 238, 353, 401, 671, 710, 788, 875
NciI	CCSGG	1 cut(s)	824
NdeII	GATC	2 cut(s)	256, 440
NlaIV	GGNNCC	2 cut(s)	252, 627
NmeAIII	GCCGAG	1 cut(s)	168
NmuCI	GTSAC	2 cut(s)	154, 598
PceI	AGGCCT	3 cut(s)	347, 576, 804
PfeI	GAWTC	2 cut(s)	96, 210
PkrI	GCNGC	3 cut(s)	141, 358, 790
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PpuMI	RGGWCCY	1 cut(s)	626
Psp5II	RGGWCCY	1 cut(s)	626
Psp6I	CCWGG	4 cut(s)	195, 347, 713, 832
PspGI	CCWGG	4 cut(s)	195, 347, 713, 832
PspN4I	GGNNCC	2 cut(s)	252, 627
PspPI	GGNCC	2 cut(s)	251, 626
PspPPI	RGGWCCY	1 cut(s)	626
PvuII	CAGCTG	1 cut(s)	216
RsaI	GTAC	4 cut(s)	274, 400, 426, 885
RsaNI	GTAC	4 cut(s)	273, 399, 425, 884
SalI	GTCGAC	1 cut(s)	641
SaqAI	TTAA	2 cut(s)	281, 656
SatI	GCNGC	3 cut(s)	140, 357, 789
Sau3AI	GATC	2 cut(s)	256, 440
Sau96I	GGNCC	2 cut(s)	251, 626
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	5 cut(s)	197, 349, 715, 824, 834
SduI	GDGCHC	1 cut(s)	168
SinI	GGWCC	1 cut(s)	626
Sse9I	AATT	4 cut(s)	127, 751, 756, 797
SseBI	AGGCCT	3 cut(s)	347, 576, 804
SsiI	CCGC	5 cut(s)	59, 140, 230, 326, 672
SspMI	CTAG	1 cut(s)	159
StuI	AGGCCT	3 cut(s)	347, 576, 804
StyD4I	CCNGG	5 cut(s)	195, 347, 713, 822, 832
TaaI	ACNGT	5 cut(s)	277, 379, 429, 529, 652
TaqI	TCGA	1 cut(s)	642
TaqII	GACCGA	1 cut(s)	710
TasI	AATT	4 cut(s)	127, 751, 756, 797
TatI	WGTACW	3 cut(s)	272, 424, 883
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	2 cut(s)	96, 210
Tru1I	TTAA	2 cut(s)	281, 656
Tru9I	TTAA	2 cut(s)	281, 656
TscAI	CASTG	2 cut(s)	282, 532
TseFI	GTSAC	2 cut(s)	154, 598
TseI	GCWGC	2 cut(s)	356, 788
Tsp45I	GTSAC	2 cut(s)	154, 598
TspGWI	ACGGA	1 cut(s)	100
TspRI	CASTG	2 cut(s)	282, 532
VpaK11BI	GGWCC	1 cut(s)	626
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	642
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.