Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001400

Physical Location & Seq

Genomic Coordinates Forward (+)

7096652 .. 7099931

Gene Structure 3280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g08790.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCACACCTTTCTCTTTACTCTCTCTCTCCTCCTATTTCCTACCCACCTTCTTGTCATCCACTTCACCGGCGAATCTTCGTCGTTGCTTCCAGGATCCACGCAGCCTCCGCAACTTCCACCTCCATTTCACACGCGCAGCCGAAGGTCGTCGTCACGAGAGAGCGCGGCAAGAACGGCAAGCTCATCGCCTCCCTGGCCAAGCAGGGAATCAGCTGTTTGGAGCTTCCGCTCATTGAGCATACACGGGGGCCAGATCTGGATAGGCTTTCTACAGTATTAAGTGATACTACATTTGATTGGATTGTCATAACGTCCCCTGAAGCGAGTTCAGTCTTCTTAGAGGCCTGGAAGGCTGCTGGAACTCCAAATGTTACGGTAGGGGTCGTGGGGGCTGGTACAGCAAGCATATTTGAGGAAGTAGTACAGTCATCGAAGCGATCCCTCAACATTGCTTTTGTGCCATCCAAAGCAACTGGCAAGGTCTTGGCTTCAGAGCTTCCTAAGAATGGGAATGAAAAATGCACCGTTTTATATCCTGCTTCTGCAAAGGCCAGCAATGAGATTGAGGAAGGCCTGTCCAATCGTGGGTTTGAGGTCACAAGGCTAAATACATACACAACGGACCCTGTTCATCATGTCGACCAAACAGTTTTAAAGCAGGCACTCTCCGCCCCTGTCATAGCAGTTGCTTCTCCATCAGCTATTCGTGCCTGGGTCGGTCTTATTCCAGAGTCAGAGCAATGGAGCAATTCAGTTGCCTGTATTGGTGAGACAACTGCTAAGGCTGCTAAGAAATTAGGCCTCACAAATGTTTACTACCCAGCAAACCCAGGTCTTGAAGGGTGGGTGGGTAGCATACTTGAAGCGTTGCAAGCAAATGCGCGTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004852 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006778 GO:0006779 GO:0006780 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046502 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

HEM4

Protein Analysis

298

Amino Acids

31.58

Weight (kDa)

8.63

Isoelectric Point (pI)

43.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26540 AT2G26540 AT2G26540
fragaria_vesca	FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880
malus_domestica	MD08G1106500.v1.1 MD15G1087100.v1.1
prunus_persica	Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1
pyrus_communis	pycom08g08790 pycom15g08200
rosa_chinensis	RchiOBHm_Chr6g0307161
rosa_laevigata	RLG00000004395 RLG00000010732
rosa_multiflora	Rmu_sc0001776.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011040 Rroxscaffold_2G00117190 Rroxscaffold_7G00161130
rosa_rugosa	Rorug06G0356900 Rorug06G0357000 Rorug06G0357000
rosa_samantha	Rh1BG065500 Rh6AG227000 Rh6AG467900 Rh6BG432600 Rh6CG483100 Rh6DG469600
rosa_wichuraiana	Rw6G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	232
AccI	GTMKAC	1 cut(s)	642
AccII	CGCG	3 cut(s)	137, 168, 886
AciI	CCGC	4 cut(s)	111, 168, 230, 672
AclWI	GGATC	3 cut(s)	91, 104, 435
AcoI	YGGCCR	1 cut(s)	198
AcuI	CTGAAG	2 cut(s)	342, 477
AfaI	GTAC	2 cut(s)	400, 426
AfiI	CCNNNNNNNGG	2 cut(s)	509, 588
AgsI	TTSAA	2 cut(s)	842, 866
AjnI	CCWGG	5 cut(s)	92, 195, 347, 713, 832
AluBI	AGCT	5 cut(s)	184, 216, 226, 499, 704
AluI	AGCT	5 cut(s)	184, 216, 226, 499, 704
Alw26I	GTCTC	1 cut(s)	767
AlwI	GGATC	3 cut(s)	91, 104, 435
AoxI	GGCC	6 cut(s)	198, 251, 345, 552, 574, 802
ApeKI	GCWGC	4 cut(s)	104, 139, 356, 788
AspLEI	GCGC	3 cut(s)	139, 168, 886
AspS9I	GGNCC	2 cut(s)	251, 625
AsuHPI	GGTGA	2 cut(s)	59, 782
AvaII	GGWCC	1 cut(s)	625
BalI	TGGCCA	1 cut(s)	200
BamHI	GGATCC	1 cut(s)	96
BauI	CACGAG	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	328
BbvI	GCAGC	4 cut(s)	116, 151, 343, 775
BccI	CCATC	2 cut(s)	472, 706
BceAI	ACGGC	1 cut(s)	193
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BciT130I	CCWGG	5 cut(s)	94, 197, 349, 715, 834
BcoDI	GTCTC	1 cut(s)	767
BfmI	CTRYAG	1 cut(s)	273
BglI	GCCNNNNNGGC	2 cut(s)	197, 353
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	5 cut(s)	105, 140, 169, 357, 789
BlsI	GCNGC	5 cut(s)	106, 141, 170, 358, 790
Bme1390I	CCNGG	5 cut(s)	94, 197, 349, 715, 834
Bme18I	GGWCC	1 cut(s)	625
BmgT120I	GGNCC	2 cut(s)	251, 625
BmiI	GGNNCC	3 cut(s)	98, 252, 627
BmrFI	CCNGG	5 cut(s)	94, 197, 349, 715, 834
BpiI	GAAGAC	1 cut(s)	328
Bpu10I	CCTNAGC	1 cut(s)	783
BsaJI	CCNNGG	3 cut(s)	195, 714, 832
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	509, 588
Bse118I	RCCGGY	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	481
Bse3DI	GCAATG	3 cut(s)	450, 565, 749
BseBI	CCWGG	5 cut(s)	94, 197, 349, 715, 834
BseDI	CCNNGG	3 cut(s)	195, 714, 832
BseGI	GGATG	2 cut(s)	58, 464
BseLI	CCNNNNNNNGG	2 cut(s)	509, 588
BseMI	GCAATG	3 cut(s)	450, 565, 749
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	4 cut(s)	116, 151, 343, 775
BseYI	CCCAGC	1 cut(s)	823
Bsh1236I	CGCG	3 cut(s)	137, 168, 886
BshFI	GGCC	6 cut(s)	200, 253, 347, 554, 576, 804
BsiSI	CCGG	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	2 cut(s)	509, 588
BsmAI	GTCTC	1 cut(s)	767
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	6 cut(s)	200, 253, 347, 554, 576, 804
Bsp143I	GATC	3 cut(s)	96, 256, 440
BspACI	CCGC	4 cut(s)	111, 168, 230, 672
BspANI	GGCC	6 cut(s)	200, 253, 347, 554, 576, 804
BspFNI	CGCG	3 cut(s)	137, 168, 886
BspLI	GGNNCC	3 cut(s)	98, 252, 627
BspPI	GGATC	3 cut(s)	91, 104, 435
BsrBI	CCGCTC	1 cut(s)	232
BsrDI	GCAATG	3 cut(s)	450, 565, 749
BsrFI	RCCGGY	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	481
BssAI	RCCGGY	1 cut(s)	69
BssECI	CCNNGG	3 cut(s)	195, 714, 832
BssMI	GATC	3 cut(s)	96, 256, 440
BssSI	CACGAG	1 cut(s)	157
Bst2BI	CACGAG	1 cut(s)	157
Bst2UI	CCWGG	5 cut(s)	94, 197, 349, 715, 834
Bst4CI	ACNGT	5 cut(s)	277, 379, 429, 529, 652
BstC8I	GCNNGC	5 cut(s)	182, 406, 556, 663, 876
BstDEI	CTNAG	4 cut(s)	340, 504, 783, 792
BstF5I	GGATG	2 cut(s)	58, 464
BstFNI	CGCG	3 cut(s)	137, 168, 886
BstHHI	GCGC	3 cut(s)	139, 168, 886
BstKTI	GATC	3 cut(s)	99, 259, 443
BstMAI	GTCTC	1 cut(s)	767
BstMBI	GATC	3 cut(s)	96, 256, 440
BstNI	CCWGG	5 cut(s)	94, 197, 349, 715, 834
BstSCI	CCNGG	5 cut(s)	92, 195, 347, 713, 832
BstSFI	CTRYAG	1 cut(s)	273
BstUI	CGCG	3 cut(s)	137, 168, 886
BstV1I	GCAGC	4 cut(s)	116, 151, 343, 775
BstV2I	GAAGAC	1 cut(s)	328
BstX2I	RGATCY	2 cut(s)	96, 256
BstYI	RGATCY	2 cut(s)	96, 256
BsuRI	GGCC	6 cut(s)	200, 253, 347, 554, 576, 804
BtgZI	GCGATG	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	58, 464
Cac8I	GCNNGC	5 cut(s)	182, 406, 556, 663, 876
CfoI	GCGC	3 cut(s)	139, 168, 886
Cfr10I	RCCGGY	1 cut(s)	69
Cfr13I	GGNCC	2 cut(s)	251, 625
CseI	GACGC	1 cut(s)	875
Csp6I	GTAC	2 cut(s)	399, 425
CviAII	CATG	1 cut(s)	638
CviQI	GTAC	2 cut(s)	399, 425
DdeI	CTNAG	4 cut(s)	340, 504, 783, 792
DpnI	GATC	3 cut(s)	98, 258, 442
DpnII	GATC	3 cut(s)	96, 256, 440
DraI	TTTAAA	1 cut(s)	657
EaeI	YGGCCR	1 cut(s)	198
EciI	GGCGGA	1 cut(s)	661
Eco147I	AGGCCT	3 cut(s)	347, 576, 804
Eco47I	GGWCC	1 cut(s)	625
Eco57I	CTGAAG	2 cut(s)	342, 477
EcoRII	CCWGG	5 cut(s)	92, 195, 347, 713, 832
FaeI	CATG	1 cut(s)	641
FaiI	YATR	8 cut(s)	243, 311, 410, 535, 616, 639, 683, 860
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	1 cut(s)	637
FblI	GTMKAC	1 cut(s)	642
Fnu4HI	GCNGC	5 cut(s)	105, 140, 169, 357, 789
FokI	GGATG	2 cut(s)	45, 451
Fsp4HI	GCNGC	5 cut(s)	105, 140, 169, 357, 789
GlaI	GCGC	3 cut(s)	138, 167, 885
GluI	GCNGC	5 cut(s)	105, 140, 169, 357, 789
GsaI	CCCAGC	1 cut(s)	827
HaeIII	GGCC	6 cut(s)	200, 253, 347, 554, 576, 804
HapII	CCGG	1 cut(s)	70
HgaI	GACGC	1 cut(s)	875
HhaI	GCGC	3 cut(s)	139, 168, 886
Hin1II	CATG	1 cut(s)	641
Hin6I	GCGC	3 cut(s)	137, 166, 884
HinP1I	GCGC	3 cut(s)	137, 166, 884
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	3 cut(s)	75, 210, 734
HpaII	CCGG	1 cut(s)	70
HphI	GGTGA	2 cut(s)	59, 782
Hpy166II	GTNNAC	2 cut(s)	643, 817
Hpy188I	TCNGA	2 cut(s)	496, 739
Hpy188III	TCNNGA	4 cut(s)	157, 260, 731, 839
Hpy8I	GTNNAC	2 cut(s)	643, 817
Hpy99I	CGWCG	2 cut(s)	86, 155
HpyAV	CCTTC	5 cut(s)	60, 139, 346, 566, 836
HpyCH4III	ACNGT	5 cut(s)	277, 379, 429, 529, 652
HpyCH4IV	ACGT	1 cut(s)	314
HpyCH4V	TGCA	3 cut(s)	525, 548, 874
HpyF3I	CTNAG	4 cut(s)	340, 504, 783, 792
HpySE526I	ACGT	1 cut(s)	314
Hsp92II	CATG	1 cut(s)	641
HspAI	GCGC	3 cut(s)	137, 166, 884
Kzo9I	GATC	3 cut(s)	96, 256, 440
LmnI	GCTCC	2 cut(s)	223, 747
Lsp1109I	GCAGC	4 cut(s)	116, 151, 343, 775
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	3 cut(s)	154, 373, 598
MalI	GATC	3 cut(s)	98, 258, 442
MbiI	CCGCTC	1 cut(s)	232
MboI	GATC	3 cut(s)	96, 256, 440
MboII	GAAGA	2 cut(s)	70, 328
MflI	RGATCY	2 cut(s)	96, 256
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	2 cut(s)	751, 797
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	1 cut(s)	743
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	2 cut(s)	281, 656
Msp20I	TGGCCA	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	216
MspI	CCGG	1 cut(s)	70
MspR9I	CCNGG	5 cut(s)	94, 197, 349, 715, 834
MvaI	CCWGG	5 cut(s)	94, 197, 349, 715, 834
MvnI	CGCG	3 cut(s)	137, 168, 886
NdeII	GATC	3 cut(s)	96, 256, 440
NlaIII	CATG	1 cut(s)	641
NlaIV	GGNNCC	3 cut(s)	98, 252, 627
NmuCI	GTSAC	2 cut(s)	154, 598
PceI	AGGCCT	3 cut(s)	347, 576, 804
PfeI	GAWTC	2 cut(s)	75, 210
PfoI	TCCNGGA	1 cut(s)	92
PkrI	GCNGC	5 cut(s)	106, 141, 170, 358, 790
PleI	GAGTC	1 cut(s)	742
PpsI	GAGTC	1 cut(s)	742
Psp6I	CCWGG	5 cut(s)	92, 195, 347, 713, 832
PspFI	CCCAGC	1 cut(s)	823
PspGI	CCWGG	5 cut(s)	92, 195, 347, 713, 832
PspN4I	GGNNCC	3 cut(s)	98, 252, 627
PspPI	GGNCC	2 cut(s)	251, 625
PsuI	RGATCY	2 cut(s)	96, 256
PvuII	CAGCTG	1 cut(s)	216
RsaI	GTAC	2 cut(s)	400, 426
RsaNI	GTAC	2 cut(s)	399, 425
SalI	GTCGAC	1 cut(s)	641
SaqAI	TTAA	2 cut(s)	281, 656
SatI	GCNGC	5 cut(s)	105, 140, 169, 357, 789
Sau3AI	GATC	3 cut(s)	96, 256, 440
Sau96I	GGNCC	2 cut(s)	251, 625
SchI	GAGTC	1 cut(s)	743
ScrFI	CCNGG	5 cut(s)	94, 197, 349, 715, 834
SfcI	CTRYAG	1 cut(s)	273
SgrAI	CRCCGGYG	1 cut(s)	69
SinI	GGWCC	1 cut(s)	625
Sse9I	AATT	2 cut(s)	751, 797
SseBI	AGGCCT	3 cut(s)	347, 576, 804
SsiI	CCGC	4 cut(s)	111, 168, 230, 672
StuI	AGGCCT	3 cut(s)	347, 576, 804
StyD4I	CCNGG	5 cut(s)	92, 195, 347, 713, 832
TaaI	ACNGT	5 cut(s)	277, 379, 429, 529, 652
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	2 cut(s)	434, 642
TaqII	GACCGA	1 cut(s)	710
TasI	AATT	2 cut(s)	751, 797
TatI	WGTACW	1 cut(s)	424
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	2 cut(s)	75, 210
Tru1I	TTAA	2 cut(s)	281, 656
Tru9I	TTAA	2 cut(s)	281, 656
TseFI	GTSAC	2 cut(s)	154, 598
TseI	GCWGC	4 cut(s)	104, 139, 356, 788
Tsp45I	GTSAC	2 cut(s)	154, 598
TspDTI	ATGAA	2 cut(s)	531, 623
TspGWI	ACGGA	1 cut(s)	638
VpaK11BI	GGWCC	1 cut(s)	625
XmiI	GTMKAC	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.