Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001400

Physical Location & Seq

Genomic Coordinates Forward (+)

9966363 .. 9968412

Gene Structure 2050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG065500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGCCGACAACGTGCTTGATGTTTGGATACCCAGAAAAACGAAGGATGGAGATGAAATCCCACATTACGAGGAAGGCCTGTCCAATCGTGGATTTGAGGTCACAAGGCTAAATACGTACACCACGGGACCTGTTGACCATGTCGATCAAATGGTTTTGAAGCAGGCTCTTTCTGCCCCTGTTGTTGCAGTTGCTTCTCCTTCTGCAGTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004852 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006778 GO:0006779 GO:0006780 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046502 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

HEM4

Protein Analysis

71

Amino Acids

7.84

Weight (kDa)

4.82

Isoelectric Point (pI)

29.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26540 AT2G26540 AT2G26540
fragaria_vesca	FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880
malus_domestica	MD08G1106500.v1.1 MD15G1087100.v1.1
prunus_persica	Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1
pyrus_communis	pycom08g08790 pycom15g08200
rosa_chinensis	RchiOBHm_Chr6g0307161
rosa_laevigata	RLG00000004395 RLG00000010732
rosa_multiflora	Rmu_sc0001776.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011040 Rroxscaffold_2G00117190 Rroxscaffold_7G00161130
rosa_rugosa	Rorug06G0356900 Rorug06G0357000 Rorug06G0357000
rosa_samantha	Rh1BG065500 Rh6AG227000 Rh6AG467900 Rh6BG432600 Rh6CG483100 Rh6DG469600
rosa_wichuraiana	Rw6G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	160
AoxI	GGCC	2 cut(s)	3, 76
AspS9I	GGNCC	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	128
BccI	CCATC	1 cut(s)	41
BciVI	GTATCC	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	21
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	129
BsaAI	YACGTR	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	52
BshFI	GGCC	2 cut(s)	5, 78
BslFI	GGGAC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	2 cut(s)	5, 78
Bsp143I	GATC	1 cut(s)	145
BspANI	GGCC	2 cut(s)	5, 78
BspLI	GGNNCC	1 cut(s)	129
BspMAI	CTGCAG	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	1 cut(s)	145
BstBAI	YACGTR	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	165
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstSFI	CTRYAG	1 cut(s)	204
BstSNI	TACGTA	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	5, 78
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	4 cut(s)	5, 78, 109, 167
CviKI_1	RGCY	4 cut(s)	5, 78, 109, 167
CviQI	GTAC	1 cut(s)	118
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	3
Eco105I	TACGTA	1 cut(s)	117
Eco147I	AGGCCT	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	128
FaeI	CATG	1 cut(s)	143
FaiI	YATR	1 cut(s)	141
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	1 cut(s)	139
FokI	GGATG	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	5, 78
Hin1II	CATG	1 cut(s)	143
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
Hpy166II	GTNNAC	2 cut(s)	120, 136
Hpy8I	GTNNAC	2 cut(s)	120, 136
HpyAV	CCTTC	3 cut(s)	37, 68, 210
HpyCH4IV	ACGT	2 cut(s)	12, 116
HpyCH4V	TGCA	2 cut(s)	188, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpySE526I	ACGT	2 cut(s)	12, 116
Hsp92II	CATG	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	145
LpnPI	CCDG	5 cut(s)	46, 92, 144, 149, 192
MaeII	ACGT	2 cut(s)	12, 116
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MnlI	CCTC	2 cut(s)	64, 91
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	1 cut(s)	143
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	100
PceI	AGGCCT	1 cut(s)	78
PflFI	GACNNNGTC	1 cut(s)	140
Ppu21I	YACGTR	1 cut(s)	117
PpuMI	RGGWCCY	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	128
PspPPI	RGGWCCY	1 cut(s)	128
PstI	CTGCAG	1 cut(s)	208
PsyI	GACNNNGTC	1 cut(s)	140
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	1 cut(s)	128
SetI	ASST	4 cut(s)	15, 102, 119, 133
SfcI	CTRYAG	1 cut(s)	204
SinI	GGWCC	1 cut(s)	128
SnaBI	TACGTA	1 cut(s)	117
SseBI	AGGCCT	1 cut(s)	78
StuI	AGGCCT	1 cut(s)	78
TaiI	ACGT	2 cut(s)	15, 119
TaqI	TCGA	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	69
Tth111I	GACNNNGTC	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.