Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001400

Physical Location & Seq

Genomic Coordinates Forward (+)

5098151 .. 5101831

Gene Structure 3681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g08200.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAATTTTTGGCCGTTCTTGGAGATTCGAAGCCCCGCCACAGATTTTGTATACTTGACATGGCAATGGGCTGGCCTGCTGCAATCCTGCCTGTGCAACACGTTTCGAATGGCACACCTTTCTCTCTTCTCTCTCTCTCCTCCTATTTCCTGCCCACCTTCTTGTCCGCCACTTCAACGGCGAACCTTCGTGGTTGCTTCCAGAATCCAAGTGGCCTCCGTAACTTCCACCTCCAATTCACACGCGCCGCCGAGAGTCATCGTGACTAGAGAGCACGGCAAGAACAGCAAGCTCGTCGCCTCCCTGGCCAAGCAGGGAATCAGCTGTTTGGAGCTTCCGCTCATTCAGCATACACGGGGGCCTGATCTGGATAGGCTTTCTACAGTGTTAAGTGCAGATACTACATTTGATTGGATTGTCATCACTTCCCCTGAAGCGGGTTCAGTCTTCTTAGAGGCCTGGAAGGCTGCTGGAAGTCCAAATGTTACAGTAGGGGTTGTGGGGGCTGGTACAGCAAGCATATTTGAGGAGGTAGTACAGTCCTCAAAGCGATCCCTCAACATTGCCTTTGTGCCATCCAAAGCAACAGGCGAGGTTTTGGCTTCAGAGCTTCCTAAGAATGGGATTGAAAAATGCACTGTTTTATATCCTGCTTCTGCGAAGGCCAGCAATGAGATTGAGGAACGCCTGTCCAATCGTGGGTTTGAGGTCACAAGGCTAAATACATACACAACGGGACCTGTCCATCATGTCGACCAAACAGTTTTAAAGCAGGCACTCACCGCTCCTGTCATAGCAGTTGCTTCTCCTTCAGCTATTCGTGCCTGGGTCGGTCTTATTTCAGAGCCAGAGAAATGGAGCAATTCAGTTGCCTGCATTGGTCAGACAACTGCTAAGGCTGCTAAGAAATTAGGCCTGAGAAATGTTTACTACCCGGCAAACCCAGGTCTTGAAGGGTGGGTGGGTAGCATACTAGAAGCGTTGCAAGCAAATGTACATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004852 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006778 GO:0006779 GO:0006780 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046502 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

HEM4

Protein Analysis

335

Amino Acids

35.98

Weight (kDa)

8.83

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26540 AT2G26540 AT2G26540
fragaria_vesca	FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880
malus_domestica	MD08G1106500.v1.1 MD15G1087100.v1.1
prunus_persica	Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1
pyrus_communis	pycom08g08790 pycom15g08200
rosa_chinensis	RchiOBHm_Chr6g0307161
rosa_laevigata	RLG00000004395 RLG00000010732
rosa_multiflora	Rmu_sc0001776.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011040 Rroxscaffold_2G00117190 Rroxscaffold_7G00161130
rosa_rugosa	Rorug06G0356900 Rorug06G0357000 Rorug06G0357000
rosa_samantha	Rh1BG065500 Rh6AG227000 Rh6AG467900 Rh6BG432600 Rh6CG483100 Rh6DG469600
rosa_wichuraiana	Rw6G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	340, 785
AccI	GTMKAC	2 cut(s)	51, 753
AccII	CGCG	1 cut(s)	245
AciI	CCGC	6 cut(s)	36, 167, 248, 338, 437, 783
AclWI	GGATC	1 cut(s)	546
AcoI	YGGCCR	2 cut(s)	11, 306
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	3 cut(s)	453, 588, 795
AfaI	GTAC	3 cut(s)	511, 537, 996
AfiI	CCNNNNNNNGG	4 cut(s)	436, 437, 620, 699
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	3 cut(s)	176, 629, 953
AjnI	CCWGG	4 cut(s)	303, 458, 824, 943
AluBI	AGCT	5 cut(s)	292, 324, 334, 610, 815
AluI	AGCT	5 cut(s)	292, 324, 334, 610, 815
Alw21I	GWGCWC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	546
AoxI	GGCC	8 cut(s)	11, 73, 213, 306, 359, 456, 663, 913
ApeKI	GCWGC	3 cut(s)	79, 467, 899
ApoI	RAATTY	1 cut(s)	4
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	2 cut(s)	359, 737
AsuC2I	CCSGG	1 cut(s)	935
AsuHPI	GGTGA	1 cut(s)	772
AsuII	TTCGAA	2 cut(s)	28, 106
AvaII	GGWCC	1 cut(s)	737
BalI	TGGCCA	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	439
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	3 cut(s)	66, 454, 886
BccI	CCATC	2 cut(s)	583, 753
BceAI	ACGGC	2 cut(s)	194, 292
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BciT130I	CCWGG	4 cut(s)	305, 460, 826, 945
BcnI	CCSGG	1 cut(s)	935
BfaI	CTAG	2 cut(s)	267, 974
BfmI	CTRYAG	1 cut(s)	381
BglI	GCCNNNNNGGC	2 cut(s)	305, 464
BisI	GCNGC	4 cut(s)	80, 248, 468, 900
BlsI	GCNGC	4 cut(s)	81, 249, 469, 901
Bme1390I	CCNGG	5 cut(s)	305, 460, 826, 935, 945
Bme18I	GGWCC	1 cut(s)	737
BmgT120I	GGNCC	2 cut(s)	359, 737
BmiI	GGNNCC	2 cut(s)	360, 738
BmrFI	CCNGG	5 cut(s)	305, 460, 826, 935, 945
BpiI	GAAGAC	1 cut(s)	439
Bpu10I	CCTNAGC	1 cut(s)	894
Bpu14I	TTCGAA	2 cut(s)	28, 106
BpuMI	CCSGG	1 cut(s)	935
BsaBI	GATNNNNATC	1 cut(s)	419
BsaJI	CCNNGG	3 cut(s)	303, 825, 943
Bsc4I	CCNNNNNNNGG	4 cut(s)	436, 437, 620, 699
Bse3DI	GCAATG	3 cut(s)	71, 561, 676
Bse8I	GATNNNNATC	1 cut(s)	419
BseBI	CCWGG	4 cut(s)	305, 460, 826, 945
BseDI	CCNNGG	3 cut(s)	303, 825, 943
BseGI	GGATG	1 cut(s)	575
BseJI	GATNNNNATC	1 cut(s)	419
BseLI	CCNNNNNNNGG	4 cut(s)	436, 437, 620, 699
BseMI	GCAATG	3 cut(s)	71, 561, 676
BseMII	CTCAG	1 cut(s)	908
BseRI	GAGGAG	2 cut(s)	129, 542
BseXI	GCAGC	3 cut(s)	66, 454, 886
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	8 cut(s)	13, 75, 215, 308, 361, 458, 665, 915
BsiHKAI	GWGCWC	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	935
BslFI	GGGAC	1 cut(s)	750
BslI	CCNNNNNNNGG	4 cut(s)	436, 437, 620, 699
BsmFI	GGGAC	1 cut(s)	750
BsnI	GGCC	8 cut(s)	13, 75, 215, 308, 361, 458, 665, 915
Bsp119I	TTCGAA	2 cut(s)	28, 106
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp1407I	TGTACA	1 cut(s)	994
Bsp143I	GATC	2 cut(s)	364, 551
BspACI	CCGC	6 cut(s)	36, 167, 248, 338, 437, 783
BspANI	GGCC	8 cut(s)	13, 75, 215, 308, 361, 458, 665, 915
BspCNI	CTCAG	1 cut(s)	909
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	2 cut(s)	360, 738
BspPI	GGATC	1 cut(s)	546
BspT104I	TTCGAA	2 cut(s)	28, 106
BsrBI	CCGCTC	2 cut(s)	340, 785
BsrDI	GCAATG	3 cut(s)	71, 561, 676
BsrGI	TGTACA	1 cut(s)	994
BssECI	CCNNGG	3 cut(s)	303, 825, 943
BssMI	GATC	2 cut(s)	364, 551
BssNAI	GTATAC	1 cut(s)	52
Bst1107I	GTATAC	1 cut(s)	52
Bst2UI	CCWGG	4 cut(s)	305, 460, 826, 945
Bst4CI	ACNGT	5 cut(s)	385, 490, 540, 640, 763
Bst6I	CTCTTC	1 cut(s)	131
BstAUI	TGTACA	1 cut(s)	994
BstBI	TTCGAA	2 cut(s)	28, 106
BstC8I	GCNNGC	8 cut(s)	73, 77, 290, 517, 667, 774, 874, 987
BstDEI	CTNAG	5 cut(s)	451, 615, 894, 903, 917
BstF5I	GGATG	1 cut(s)	575
BstFNI	CGCG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	2 cut(s)	367, 554
BstMBI	GATC	2 cut(s)	364, 551
BstMWI	GCNNNNNNNGC	9 cut(s)	285, 305, 346, 464, 512, 782, 821, 899, 986
BstNI	CCWGG	4 cut(s)	305, 460, 826, 945
BstSCI	CCNGG	5 cut(s)	303, 458, 824, 933, 943
BstSFI	CTRYAG	1 cut(s)	381
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	3 cut(s)	66, 454, 886
BstV2I	GAAGAC	1 cut(s)	439
BstXI	CCANNNNNNTGG	1 cut(s)	855
BstZ17I	GTATAC	1 cut(s)	52
BsuRI	GGCC	8 cut(s)	13, 75, 215, 308, 361, 458, 665, 915
BtsCI	GGATG	1 cut(s)	575
BtsIMutI	CAGTG	2 cut(s)	390, 636
Cac8I	GCNNGC	8 cut(s)	73, 77, 290, 517, 667, 774, 874, 987
CfoI	GCGC	1 cut(s)	247
Cfr13I	GGNCC	2 cut(s)	359, 737
Csp6I	GTAC	3 cut(s)	510, 536, 995
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CviAII	CATG	2 cut(s)	60, 749
CviQI	GTAC	3 cut(s)	510, 536, 995
DdeI	CTNAG	5 cut(s)	451, 615, 894, 903, 917
DpnI	GATC	2 cut(s)	366, 553
DpnII	GATC	2 cut(s)	364, 551
DraI	TTTAAA	1 cut(s)	768
EaeI	YGGCCR	2 cut(s)	11, 306
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
EciI	GGCGGA	1 cut(s)	156
Eco147I	AGGCCT	2 cut(s)	458, 915
Eco47I	GGWCC	1 cut(s)	737
Eco57I	CTGAAG	3 cut(s)	453, 588, 795
EcoO109I	RGGNCCY	2 cut(s)	359, 737
EcoRII	CCWGG	4 cut(s)	303, 458, 824, 943
FaeI	CATG	2 cut(s)	63, 752
FaiI	YATR	9 cut(s)	52, 61, 351, 521, 646, 727, 750, 794, 971
FaqI	GGGAC	1 cut(s)	750
FatI	CATG	2 cut(s)	59, 748
FauI	CCCGC	2 cut(s)	43, 430
FblI	GTMKAC	2 cut(s)	51, 753
Fnu4HI	GCNGC	4 cut(s)	80, 248, 468, 900
FokI	GGATG	1 cut(s)	562
Fsp4HI	GCNGC	4 cut(s)	80, 248, 468, 900
FspBI	CTAG	2 cut(s)	267, 974
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	4 cut(s)	80, 248, 468, 900
HaeIII	GGCC	8 cut(s)	13, 75, 215, 308, 361, 458, 665, 915
HapII	CCGG	1 cut(s)	935
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	2 cut(s)	63, 752
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HinfI	GANTC	4 cut(s)	25, 204, 255, 318
HpaII	CCGG	1 cut(s)	935
HphI	GGTGA	1 cut(s)	772
Hpy166II	GTNNAC	3 cut(s)	52, 754, 928
Hpy188I	TCNGA	3 cut(s)	607, 844, 885
Hpy188III	TCNNGA	4 cut(s)	201, 262, 368, 950
Hpy8I	GTNNAC	3 cut(s)	52, 754, 928
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	6 cut(s)	168, 196, 457, 655, 819, 947
HpyCH4III	ACNGT	5 cut(s)	385, 490, 540, 640, 763
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	6 cut(s)	82, 96, 395, 636, 876, 985
HpyF10VI	GCNNNNNNNGC	9 cut(s)	285, 305, 346, 464, 512, 782, 821, 899, 986
HpyF3I	CTNAG	5 cut(s)	451, 615, 894, 903, 917
HpySE526I	ACGT	1 cut(s)	101
Hsp92II	CATG	2 cut(s)	63, 752
HspAI	GCGC	1 cut(s)	245
Kzo9I	GATC	2 cut(s)	364, 551
LmnI	GCTCC	3 cut(s)	331, 790, 858
Lsp1109I	GCAGC	3 cut(s)	66, 454, 886
MaeI	CTAG	2 cut(s)	267, 974
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	4 cut(s)	220, 262, 484, 709
MalI	GATC	2 cut(s)	366, 553
MbiI	CCGCTC	2 cut(s)	340, 785
MboI	GATC	2 cut(s)	364, 551
MboII	GAAGA	2 cut(s)	118, 439
MhlI	GDGCHC	1 cut(s)	276
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	4 cut(s)	4, 235, 862, 908
MluNI	TGGCCA	1 cut(s)	308
MlyI	GAGTC	1 cut(s)	264
Mox20I	TGGCCA	1 cut(s)	308
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	2 cut(s)	389, 767
MslI	CAYNNNNRTG	1 cut(s)	64
Msp20I	TGGCCA	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	324
MspI	CCGG	1 cut(s)	935
MspR9I	CCNGG	5 cut(s)	305, 460, 826, 935, 945
MvaI	CCWGG	4 cut(s)	305, 460, 826, 945
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	9 cut(s)	285, 305, 346, 464, 512, 782, 821, 899, 986
NciI	CCSGG	1 cut(s)	935
NdeII	GATC	2 cut(s)	364, 551
NlaIII	CATG	2 cut(s)	63, 752
NlaIV	GGNNCC	2 cut(s)	360, 738
NmeAIII	GCCGAG	1 cut(s)	276
NmuCI	GTSAC	2 cut(s)	262, 709
NspV	TTCGAA	2 cut(s)	28, 106
PceI	AGGCCT	2 cut(s)	458, 915
PfeI	GAWTC	3 cut(s)	25, 204, 318
PkrI	GCNGC	4 cut(s)	81, 249, 469, 901
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PpuMI	RGGWCCY	1 cut(s)	737
Psp5II	RGGWCCY	1 cut(s)	737
Psp6I	CCWGG	4 cut(s)	303, 458, 824, 943
PspGI	CCWGG	4 cut(s)	303, 458, 824, 943
PspN4I	GGNNCC	2 cut(s)	360, 738
PspPI	GGNCC	2 cut(s)	359, 737
PspPPI	RGGWCCY	1 cut(s)	737
PvuII	CAGCTG	1 cut(s)	324
RsaI	GTAC	3 cut(s)	511, 537, 996
RsaNI	GTAC	3 cut(s)	510, 536, 995
RseI	CAYNNNNRTG	1 cut(s)	64
SalI	GTCGAC	1 cut(s)	752
SaqAI	TTAA	2 cut(s)	389, 767
SatI	GCNGC	4 cut(s)	80, 248, 468, 900
Sau3AI	GATC	2 cut(s)	364, 551
Sau96I	GGNCC	2 cut(s)	359, 737
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	5 cut(s)	305, 460, 826, 935, 945
SduI	GDGCHC	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	381
SfuI	TTCGAA	2 cut(s)	28, 106
SinI	GGWCC	1 cut(s)	737
SmiMI	CAYNNNNRTG	1 cut(s)	64
Sse9I	AATT	4 cut(s)	4, 235, 862, 908
SseBI	AGGCCT	2 cut(s)	458, 915
SsiI	CCGC	6 cut(s)	36, 167, 248, 338, 437, 783
SspMI	CTAG	2 cut(s)	267, 974
StuI	AGGCCT	2 cut(s)	458, 915
StyD4I	CCNGG	5 cut(s)	303, 458, 824, 933, 943
TaaI	ACNGT	5 cut(s)	385, 490, 540, 640, 763
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	3 cut(s)	28, 106, 753
TaqII	GACCGA	1 cut(s)	821
TasI	AATT	4 cut(s)	4, 235, 862, 908
TatI	WGTACW	2 cut(s)	535, 994
TauI	GCSGC	1 cut(s)	250
TfiI	GAWTC	3 cut(s)	25, 204, 318
Tru1I	TTAA	2 cut(s)	389, 767
Tru9I	TTAA	2 cut(s)	389, 767
TscAI	CASTG	2 cut(s)	390, 643
TseFI	GTSAC	2 cut(s)	262, 709
TseI	GCWGC	3 cut(s)	79, 467, 899
Tsp45I	GTSAC	2 cut(s)	262, 709
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	2 cut(s)	390, 643
VpaK11BI	GGWCC	1 cut(s)	737
XapI	RAATTY	1 cut(s)	4
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XmiI	GTMKAC	2 cut(s)	51, 753
XspI	CTAG	2 cut(s)	267, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.