Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001400

Physical Location & Seq

Genomic Coordinates Forward (+)

3951432 .. 3956040

Gene Structure 4609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00161130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAATAAAATAATGAGACGTACTTCAATTAGTAATAGGTGTCCCTCTGTAATCCTCTGCGTGGCAACACGTTTCCAATGGCACAGATTTCCTTTCCTCTTCCTCTCCCTCTTCTTGTCCTCTAATTCACCGGCGAATCTTTCTTCCTTGTGCTTTTTCAATCCAACCTACCTCGACTTCAAATTCGCAGCCGCCGAAAGTCGTCGTCACCAGAGAGCGCGGCAAGAATGCCAAACTCATCACCTCTCTGCAAGCTTCTTTTTGGTCTTTAGGGCTGCTGGAACTCCAAATGTTAAGGTTGGTGTCGTCGGGGCTGGTACAGCAAGTGTCTTTGAGCAAGTACCTCAGTCATCAAAGAATTCCCTCAGTCTTGCCTTTGTGCCATCAAAAGCAACAGGCAAGGTTTTGGCTTCAGAGCTCCCTAAGAATAGGAAAGACAAATGCACAGTCCTATATCCTGCTTCTGCAAAAGCTGGCAATGAGATTGAGGAAGGCCTGTCCAATCGTGGATTTGAGGTCACAAGGCTAGATACGTACACCACGGGACCTGTTGACCATGTCGATCAAATGGTTTTGAAGCAGGCTCTTTCTGCTCCTGTTGTTGCAGTTGCTTCACCTTCTGCAGTTCGTGCTTGGGTCAATCTTATTTCTGAGTCTGAGCAATGGAACAATTCGGTTGCCTGTATTGGTGAGACAACTGCCAAGGCTGCTAGTAGATTAGGCTTGAGAAATGTTTACTATCCAGTGCAACCAGATGGGTGGATAGCATTGTTGAAGCATTGGGAGCAAATGTCCATATGTAGAGAAGAGCAGTCTGTCCAGTTTTCTTGCCGGCAGGGGCAGACTGATGAAGAGGTAACTGGTGCACAGTTGAGGGAGCACGAACAAACACATGAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004852 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006778 GO:0006779 GO:0006780 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046502 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

HEM4

Protein Analysis

300

Amino Acids

33.32

Weight (kDa)

8.92

Isoelectric Point (pI)

50.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEM4	PF02602	94 - 252	4.2e-29	Uroporphyrinogen-III synthase HemD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26540 AT2G26540 AT2G26540
fragaria_vesca	FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880
malus_domestica	MD08G1106500.v1.1 MD15G1087100.v1.1
prunus_persica	Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1
pyrus_communis	pycom08g08790 pycom15g08200
rosa_chinensis	RchiOBHm_Chr6g0307161
rosa_laevigata	RLG00000004395 RLG00000010732
rosa_multiflora	Rmu_sc0001776.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011040 Rroxscaffold_2G00117190 Rroxscaffold_7G00161130
rosa_rugosa	Rorug06G0356900 Rorug06G0357000 Rorug06G0357000
rosa_samantha	Rh1BG065500 Rh6AG227000 Rh6AG467900 Rh6BG432600 Rh6CG483100 Rh6DG469600
rosa_wichuraiana	Rw6G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	220
AciI	CCGC	2 cut(s)	192, 220
AcsI	RAATTY	2 cut(s)	182, 358
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	4 cut(s)	22, 319, 342, 536
AfiI	CCNNNNNNNGG	1 cut(s)	61
AflIII	ACRYGT	1 cut(s)	68
AgsI	TTSAA	5 cut(s)	27, 160, 181, 577, 775
AluBI	AGCT	3 cut(s)	255, 418, 473
AluI	AGCT	3 cut(s)	255, 418, 473
Alw21I	GWGCWC	3 cut(s)	420, 868, 882
Alw26I	GTCTC	2 cut(s)	10, 686
Alw44I	GTGCAC	1 cut(s)	864
AoxI	GGCC	1 cut(s)	493
ApaLI	GTGCAC	1 cut(s)	864
ApeKI	GCWGC	3 cut(s)	188, 275, 707
ApoI	RAATTY	2 cut(s)	182, 358
ArsI	GACNNNNNNTTYG	4 cut(s)	167, 199, 432, 464
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	545
AsuHPI	GGTGA	5 cut(s)	120, 200, 233, 606, 701
AvaII	GGWCC	1 cut(s)	545
BaeGI	GKGCMC	1 cut(s)	868
BanII	GRGCYC	1 cut(s)	420
Bbv12I	GWGCWC	3 cut(s)	420, 868, 882
BbvI	GCAGC	3 cut(s)	200, 262, 694
BccI	CCATC	2 cut(s)	391, 749
BcoDI	GTCTC	2 cut(s)	10, 686
BfaI	CTAG	2 cut(s)	527, 711
BfmI	CTRYAG	1 cut(s)	621
BisI	GCNGC	5 cut(s)	189, 192, 221, 276, 708
BlsI	GCNGC	5 cut(s)	190, 193, 222, 277, 709
Bme18I	GGWCC	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	745
BsaAI	YACGTR	1 cut(s)	534
BsaJI	CCNNGG	2 cut(s)	540, 702
BsaXI	ACNNNNNCTCC	2 cut(s)	776, 806
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse118I	RCCGGY	2 cut(s)	130, 831
Bse1I	ACTGG	3 cut(s)	743, 820, 865
Bse3DI	GCAATG	2 cut(s)	484, 668
BseDI	CCNNGG	2 cut(s)	540, 702
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMI	GCAATG	2 cut(s)	484, 668
BseMII	CTCAG	4 cut(s)	359, 379, 642, 648
BseNI	ACTGG	3 cut(s)	743, 820, 865
BseSI	GKGCMC	1 cut(s)	868
BseXI	GCAGC	3 cut(s)	200, 262, 694
Bsh1236I	CGCG	1 cut(s)	220
BshFI	GGCC	1 cut(s)	495
BsiHKAI	GWGCWC	3 cut(s)	420, 868, 882
BsiSI	CCGG	2 cut(s)	131, 832
BslFI	GGGAC	2 cut(s)	27, 558
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	2 cut(s)	10, 686
BsmBI	CGTCTC	1 cut(s)	10
BsmFI	GGGAC	2 cut(s)	27, 558
BsmI	GAATGC	1 cut(s)	233
BsnI	GGCC	1 cut(s)	495
Bsp1286I	GDGCHC	3 cut(s)	420, 868, 882
Bsp143I	GATC	1 cut(s)	562
BspACI	CCGC	2 cut(s)	192, 220
BspANI	GGCC	1 cut(s)	495
BspCNI	CTCAG	4 cut(s)	358, 378, 643, 649
BspFNI	CGCG	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	546
BspMAI	CTGCAG	1 cut(s)	625
BspQI	GCTCTTC	1 cut(s)	801
BsrDI	GCAATG	2 cut(s)	484, 668
BsrFI	RCCGGY	2 cut(s)	130, 831
BsrI	ACTGG	3 cut(s)	743, 820, 865
BssAI	RCCGGY	2 cut(s)	130, 831
BssECI	CCNNGG	2 cut(s)	540, 702
BssMI	GATC	1 cut(s)	562
BssT1I	CCWWGG	1 cut(s)	702
Bst4CI	ACNGT	2 cut(s)	448, 870
Bst6I	CTCTTC	4 cut(s)	104, 116, 801, 846
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstBAI	YACGTR	1 cut(s)	534
BstC8I	GCNNGC	4 cut(s)	253, 475, 582, 833
BstDEI	CTNAG	5 cut(s)	345, 365, 423, 651, 657
BstDSI	CCRYGG	1 cut(s)	540
BstFNI	CGCG	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	1 cut(s)	565
BstMAI	GTCTC	2 cut(s)	10, 686
BstMBI	GATC	1 cut(s)	562
BstMWI	GCNNNNNNNGC	5 cut(s)	320, 590, 629, 707, 784
BstSFI	CTRYAG	1 cut(s)	621
BstSLI	GKGCMC	1 cut(s)	868
BstSNI	TACGTA	1 cut(s)	534
BstUI	CGCG	1 cut(s)	220
BstV1I	GCAGC	3 cut(s)	200, 262, 694
BstXI	CCANNNNNNTGG	1 cut(s)	759
BsuRI	GGCC	1 cut(s)	495
BtgI	CCRYGG	1 cut(s)	540
BtsIMutI	CAGTG	1 cut(s)	750
Cac8I	GCNNGC	4 cut(s)	253, 475, 582, 833
CfoI	GCGC	1 cut(s)	220
Cfr10I	RCCGGY	2 cut(s)	130, 831
Cfr13I	GGNCC	1 cut(s)	545
Csp6I	GTAC	4 cut(s)	21, 318, 341, 535
CviAII	CATG	2 cut(s)	557, 893
CviQI	GTAC	4 cut(s)	21, 318, 341, 535
DdeI	CTNAG	5 cut(s)	345, 365, 423, 651, 657
DpnI	GATC	1 cut(s)	564
DpnII	GATC	1 cut(s)	562
Eam1104I	CTCTTC	4 cut(s)	104, 116, 801, 846
EarI	CTCTTC	4 cut(s)	104, 116, 801, 846
Ecl136II	GAGCTC	1 cut(s)	418
Eco105I	TACGTA	1 cut(s)	534
Eco130I	CCWWGG	1 cut(s)	702
Eco147I	AGGCCT	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	545
Eco53kI	GAGCTC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	396
EcoICRI	GAGCTC	1 cut(s)	418
EcoO109I	RGGNCCY	1 cut(s)	545
EcoRI	GAATTC	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	702
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	702
Esp3I	CGTCTC	1 cut(s)	10
FaeI	CATG	2 cut(s)	560, 896
FaiI	YATR	5 cut(s)	454, 558, 797, 799, 894
FaqI	GGGAC	2 cut(s)	27, 558
FatI	CATG	2 cut(s)	556, 892
FauNDI	CATATG	1 cut(s)	797
Fnu4HI	GCNGC	5 cut(s)	189, 192, 221, 276, 708
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	5 cut(s)	189, 192, 221, 276, 708
FspBI	CTAG	2 cut(s)	527, 711
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	5 cut(s)	189, 192, 221, 276, 708
HaeIII	GGCC	1 cut(s)	495
HapII	CCGG	2 cut(s)	131, 832
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	2 cut(s)	560, 896
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	1 cut(s)	253
HinfI	GANTC	2 cut(s)	136, 653
HpaII	CCGG	2 cut(s)	131, 832
HphI	GGTGA	5 cut(s)	120, 200, 233, 606, 701
Hpy166II	GTNNAC	4 cut(s)	537, 553, 736, 866
Hpy188I	TCNGA	3 cut(s)	415, 652, 658
Hpy8I	GTNNAC	4 cut(s)	537, 553, 736, 866
Hpy99I	CGWCG	2 cut(s)	207, 311
HpyAV	CCTTC	2 cut(s)	485, 627
HpyCH4III	ACNGT	2 cut(s)	448, 870
HpyCH4IV	ACGT	3 cut(s)	19, 70, 533
HpyCH4V	TGCA	7 cut(s)	251, 444, 467, 605, 623, 748, 866
HpyF10VI	GCNNNNNNNGC	5 cut(s)	320, 590, 629, 707, 784
HpyF3I	CTNAG	5 cut(s)	345, 365, 423, 651, 657
HpySE526I	ACGT	3 cut(s)	19, 70, 533
Hsp92II	CATG	2 cut(s)	560, 896
HspAI	GCGC	1 cut(s)	218
KroI	GCCGGC	1 cut(s)	831
KroNI	GCCGGC	1 cut(s)	833
Kzo9I	GATC	1 cut(s)	562
LguI	GCTCTTC	1 cut(s)	801
LmnI	GCTCC	4 cut(s)	423, 598, 784, 877
Lsp1109I	GCAGC	3 cut(s)	200, 262, 694
MaeI	CTAG	2 cut(s)	527, 711
MaeII	ACGT	3 cut(s)	19, 70, 533
MaeIII	GTNAC	3 cut(s)	206, 517, 856
MalI	GATC	1 cut(s)	564
MboI	GATC	1 cut(s)	562
MboII	GAAGA	5 cut(s)	91, 103, 135, 818, 863
MhlI	GDGCHC	3 cut(s)	420, 868, 882
MluCI	AATT	5 cut(s)	27, 124, 182, 358, 670
MlyI	GAGTC	1 cut(s)	662
MmeI	TCCRAC	1 cut(s)	188
MroNI	GCCGGC	1 cut(s)	831
MseI	TTAA	1 cut(s)	294
MspI	CCGG	2 cut(s)	131, 832
Mva1269I	GAATGC	1 cut(s)	233
MvnI	CGCG	1 cut(s)	220
MwoI	GCNNNNNNNGC	5 cut(s)	320, 590, 629, 707, 784
NaeI	GCCGGC	1 cut(s)	833
NdeI	CATATG	1 cut(s)	797
NdeII	GATC	1 cut(s)	562
NgoMIV	GCCGGC	1 cut(s)	831
NlaIII	CATG	2 cut(s)	560, 896
NlaIV	GGNNCC	1 cut(s)	546
NmuCI	GTSAC	2 cut(s)	206, 517
PceI	AGGCCT	1 cut(s)	495
PciSI	GCTCTTC	1 cut(s)	801
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PctI	GAATGC	1 cut(s)	233
PdiI	GCCGGC	1 cut(s)	833
PfeI	GAWTC	1 cut(s)	136
PflFI	GACNNNGTC	1 cut(s)	557
PkrI	GCNGC	5 cut(s)	190, 193, 222, 277, 709
PleI	GAGTC	1 cut(s)	661
PpsI	GAGTC	1 cut(s)	661
Ppu21I	YACGTR	1 cut(s)	534
PpuMI	RGGWCCY	1 cut(s)	545
Psp124BI	GAGCTC	1 cut(s)	420
Psp5II	RGGWCCY	1 cut(s)	545
PspN4I	GGNNCC	1 cut(s)	546
PspPI	GGNCC	1 cut(s)	545
PspPPI	RGGWCCY	1 cut(s)	545
PstI	CTGCAG	1 cut(s)	625
PsyI	GACNNNGTC	1 cut(s)	557
RsaI	GTAC	4 cut(s)	22, 319, 342, 536
RsaNI	GTAC	4 cut(s)	21, 318, 341, 535
SacI	GAGCTC	1 cut(s)	420
SapI	GCTCTTC	1 cut(s)	801
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	5 cut(s)	189, 192, 221, 276, 708
Sau3AI	GATC	1 cut(s)	562
Sau96I	GGNCC	1 cut(s)	545
SchI	GAGTC	1 cut(s)	662
SduI	GDGCHC	3 cut(s)	420, 868, 882
SfcI	CTRYAG	1 cut(s)	621
SgrAI	CRCCGGYG	1 cut(s)	130
SinI	GGWCC	1 cut(s)	545
SmlI	CTYRAG	1 cut(s)	724
SmoI	CTYRAG	1 cut(s)	724
SnaBI	TACGTA	1 cut(s)	534
Sse9I	AATT	5 cut(s)	27, 124, 182, 358, 670
SseBI	AGGCCT	1 cut(s)	495
SsiI	CCGC	2 cut(s)	192, 220
SspMI	CTAG	2 cut(s)	527, 711
SstI	GAGCTC	1 cut(s)	420
StuI	AGGCCT	1 cut(s)	495
StyI	CCWWGG	1 cut(s)	702
TaaI	ACNGT	2 cut(s)	448, 870
TaiI	ACGT	3 cut(s)	22, 73, 536
TaqI	TCGA	2 cut(s)	174, 561
TasI	AATT	5 cut(s)	27, 124, 182, 358, 670
TauI	GCSGC	2 cut(s)	194, 223
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	1 cut(s)	750
TseFI	GTSAC	2 cut(s)	206, 517
TseI	GCWGC	3 cut(s)	188, 275, 707
Tsp45I	GTSAC	2 cut(s)	206, 517
TspDTI	ATGAA	2 cut(s)	17, 864
TspRI	CASTG	1 cut(s)	750
Tth111I	GACNNNGTC	1 cut(s)	557
VneI	GTGCAC	1 cut(s)	864
VpaK11BI	GGWCC	1 cut(s)	545
XapI	RAATTY	2 cut(s)	182, 358
XspI	CTAG	2 cut(s)	527, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.