Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001400

Physical Location & Seq

Genomic Coordinates Reverse (-)

63673515 .. 63678898

Gene Structure 5384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG469600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTTAATGAATAAAATAATGAGACGTACTTCAATTAGTAAGAGGTGTCCCTCTGCGTGGCAACACGTTTCCATGCCAATGGCACAGATTTCCCTTTCCTCTTCCTCTCCCTCCTCTTCTTGTCCTCTAATTCACCGGCGAATCTTTCTTCCTTGTGCTTTTTCAATCCAAGCTACCTCGACGACTTCAAATTCGCAGCCGCCGAAAGTCGTCGTCACCAGAGAGCGCGGCAAGAATGCCAAACTCATCACCTCTCTGGCGAAGCAGGGAATCAGCTGTTTGGAGCTTCCCCTCATCCAGCATACACGCGAGCCTGATCGAGATAGGCTTTCTACTGTATTGACTGATACTGCGTTTGACTGGATTGTCATAACTTCCCCTGAAGCTGGTTCAGTCTTTTTGGAGTCATGGAAGGCTGCCGGAACTCCAAATGTTAAGGTCGGTGTTGTCGGGGCTGGTACAGCAAGTGTCTTTGAGCAAGTACTGCAGTCATCAAAGAACTCCCTCAGTCTTGCCTTTGTGCCATCAAAAGCAACAGGCAAGGTTTTGGCTTCAGAGCTCCCTAAGAATAGGAAAGACAAATGCACAGTCCTATATCCTGCTTCTGCAAAAGCTGGCAATGAGATTGAGGAAGGCCTGTCCAATCGTGGATTTCAGGTCACAAGGCTAAATACGTACACCACGGGACCTGTTGACCATGTCGATCAAATGGTTTTGAAGCAGGCTCTTTCTGCCCCTGTTGTTGCAGTTGCTTCTCCTTCTGCAGTTCGTGCTTGGGTCAATCTTATTTCTGAGTCTGAGCAATGGAACAATTCGGTTGCCTGTATTGGTGAGACAACTGCCAAGGCTGCTAGGAGATTAGGCTTGAGAAATGTTTACTATCCAGTGCAACCAGGTCTTGAAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004852 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006778 GO:0006779 GO:0006780 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046502 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

HEM4

Protein Analysis

302

Amino Acids

32.58

Weight (kDa)

9.69

Isoelectric Point (pI)

49.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEM4	PF02602	82 - 302	8.9e-45	Uroporphyrinogen-III synthase HemD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26540 AT2G26540 AT2G26540
fragaria_vesca	FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880
malus_domestica	MD08G1106500.v1.1 MD15G1087100.v1.1
prunus_persica	Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1
pyrus_communis	pycom08g08790 pycom15g08200
rosa_chinensis	RchiOBHm_Chr6g0307161
rosa_laevigata	RLG00000004395 RLG00000010732
rosa_multiflora	Rmu_sc0001776.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011040 Rroxscaffold_2G00117190 Rroxscaffold_7G00161130
rosa_rugosa	Rorug06G0356900 Rorug06G0357000 Rorug06G0357000
rosa_samantha	Rh1BG065500 Rh6AG227000 Rh6AG467900 Rh6BG432600 Rh6CG483100 Rh6DG469600
rosa_wichuraiana	Rw6G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	365
AccII	CGCG	2 cut(s)	228, 309
AciI	CCGC	2 cut(s)	200, 228
AcsI	RAATTY	1 cut(s)	190
AcuI	CTGAAG	2 cut(s)	402, 537
AfaI	GTAC	4 cut(s)	28, 460, 483, 677
AfiI	CCNNNNNNNGG	2 cut(s)	57, 386
AflIII	ACRYGT	1 cut(s)	64
AgsI	TTSAA	5 cut(s)	33, 165, 189, 718, 902
AjnI	CCWGG	1 cut(s)	892
AluBI	AGCT	6 cut(s)	173, 276, 286, 386, 559, 614
AluI	AGCT	6 cut(s)	173, 276, 286, 386, 559, 614
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	2 cut(s)	16, 827
AoxI	GGCC	1 cut(s)	634
ApeKI	GCWGC	3 cut(s)	196, 416, 848
ApoI	RAATTY	1 cut(s)	190
ArsI	GACNNNNNNTTYG	4 cut(s)	175, 207, 573, 605
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	1 cut(s)	686
AsuHPI	GGTGA	4 cut(s)	125, 208, 241, 842
AvaII	GGWCC	1 cut(s)	686
BanII	GRGCYC	1 cut(s)	561
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	3 cut(s)	208, 403, 835
BccI	CCATC	1 cut(s)	532
BciT130I	CCWGG	1 cut(s)	894
BcoDI	GTCTC	2 cut(s)	16, 827
BfaI	CTAG	1 cut(s)	852
BfmI	CTRYAG	2 cut(s)	485, 762
BisI	GCNGC	5 cut(s)	197, 200, 229, 417, 849
BlsI	GCNGC	5 cut(s)	198, 201, 230, 418, 850
BmcAI	AGTACT	1 cut(s)	483
Bme1390I	CCNGG	1 cut(s)	894
Bme18I	GGWCC	1 cut(s)	686
BmgT120I	GGNCC	1 cut(s)	686
BmiI	GGNNCC	1 cut(s)	687
BmrFI	CCNGG	1 cut(s)	894
BpuEI	CTTGAG	1 cut(s)	886
BsaAI	YACGTR	1 cut(s)	675
BsaJI	CCNNGG	2 cut(s)	681, 843
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 386
Bse118I	RCCGGY	1 cut(s)	135
Bse1I	ACTGG	2 cut(s)	365, 884
Bse3DI	GCAATG	2 cut(s)	625, 809
BseBI	CCWGG	1 cut(s)	894
BseDI	CCNNGG	2 cut(s)	681, 843
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	2 cut(s)	57, 386
BseMI	GCAATG	2 cut(s)	625, 809
BseMII	CTCAG	3 cut(s)	520, 783, 789
BseNI	ACTGG	2 cut(s)	365, 884
BseRI	GAGGAG	1 cut(s)	103
BseXI	GCAGC	3 cut(s)	208, 403, 835
Bsh1236I	CGCG	2 cut(s)	228, 309
BshFI	GGCC	1 cut(s)	636
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	2 cut(s)	136, 420
BslFI	GGGAC	2 cut(s)	33, 699
BslI	CCNNNNNNNGG	2 cut(s)	57, 386
BsmAI	GTCTC	2 cut(s)	16, 827
BsmBI	CGTCTC	1 cut(s)	16
BsmFI	GGGAC	2 cut(s)	33, 699
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	636
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp143I	GATC	2 cut(s)	316, 703
BspACI	CCGC	2 cut(s)	200, 228
BspANI	GGCC	1 cut(s)	636
BspCNI	CTCAG	3 cut(s)	519, 784, 790
BspFNI	CGCG	2 cut(s)	228, 309
BspLI	GGNNCC	1 cut(s)	687
BspMAI	CTGCAG	2 cut(s)	489, 766
BsrDI	GCAATG	2 cut(s)	625, 809
BsrFI	RCCGGY	1 cut(s)	135
BsrI	ACTGG	2 cut(s)	365, 884
BssAI	RCCGGY	1 cut(s)	135
BssECI	CCNNGG	2 cut(s)	681, 843
BssMI	GATC	2 cut(s)	316, 703
BssT1I	CCWWGG	1 cut(s)	843
Bst2UI	CCWGG	1 cut(s)	894
Bst4CI	ACNGT	2 cut(s)	337, 589
Bst6I	CTCTTC	2 cut(s)	106, 121
BstAPI	GCANNNNNTGC	2 cut(s)	484, 770
BstBAI	YACGTR	1 cut(s)	675
BstC8I	GCNNGC	3 cut(s)	311, 616, 723
BstDEI	CTNAG	4 cut(s)	506, 564, 792, 798
BstDSI	CCRYGG	1 cut(s)	681
BstF5I	GGATG	1 cut(s)	294
BstFNI	CGCG	2 cut(s)	228, 309
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	2 cut(s)	319, 706
BstMAI	GTCTC	2 cut(s)	16, 827
BstMBI	GATC	2 cut(s)	316, 703
BstMWI	GCNNNNNNNGC	5 cut(s)	461, 484, 731, 770, 848
BstNI	CCWGG	1 cut(s)	894
BstSCI	CCNGG	1 cut(s)	892
BstSFI	CTRYAG	2 cut(s)	485, 762
BstSNI	TACGTA	1 cut(s)	675
BstUI	CGCG	2 cut(s)	228, 309
BstV1I	GCAGC	3 cut(s)	208, 403, 835
BstXI	CCANNNNNNTGG	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	636
BtgI	CCRYGG	1 cut(s)	681
BtsCI	GGATG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	891
Cac8I	GCNNGC	3 cut(s)	311, 616, 723
CfoI	GCGC	1 cut(s)	228
Cfr10I	RCCGGY	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	686
CsiI	ACCWGGT	1 cut(s)	892
Csp6I	GTAC	4 cut(s)	27, 459, 482, 676
CviAII	CATG	3 cut(s)	73, 408, 698
CviQI	GTAC	4 cut(s)	27, 459, 482, 676
DdeI	CTNAG	4 cut(s)	506, 564, 792, 798
DpnI	GATC	2 cut(s)	318, 705
DpnII	GATC	2 cut(s)	316, 703
DrdI	GACNNNNNNGTC	1 cut(s)	365
DseDI	GACNNNNNNGTC	1 cut(s)	365
Eam1104I	CTCTTC	2 cut(s)	106, 121
EarI	CTCTTC	2 cut(s)	106, 121
Ecl136II	GAGCTC	1 cut(s)	559
Eco105I	TACGTA	1 cut(s)	675
Eco130I	CCWWGG	1 cut(s)	843
Eco147I	AGGCCT	1 cut(s)	636
Eco24I	GRGCYC	1 cut(s)	561
Eco47I	GGWCC	1 cut(s)	686
Eco53kI	GAGCTC	1 cut(s)	559
Eco57I	CTGAAG	2 cut(s)	402, 537
EcoICRI	GAGCTC	1 cut(s)	559
EcoO109I	RGGNCCY	1 cut(s)	686
EcoRII	CCWGG	1 cut(s)	892
EcoT14I	CCWWGG	1 cut(s)	843
EcoT38I	GRGCYC	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	843
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	3 cut(s)	76, 411, 701
FaiI	YATR	6 cut(s)	74, 303, 371, 409, 595, 699
FaqI	GGGAC	2 cut(s)	33, 699
FatI	CATG	3 cut(s)	72, 407, 697
Fnu4HI	GCNGC	5 cut(s)	197, 200, 229, 417, 849
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	561
Fsp4HI	GCNGC	5 cut(s)	197, 200, 229, 417, 849
FspBI	CTAG	1 cut(s)	852
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	5 cut(s)	197, 200, 229, 417, 849
HaeIII	GGCC	1 cut(s)	636
HapII	CCGG	2 cut(s)	136, 420
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	3 cut(s)	76, 411, 701
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HincII	GTYRAC	1 cut(s)	694
HindII	GTYRAC	1 cut(s)	694
HinfI	GANTC	4 cut(s)	141, 270, 404, 794
HpaII	CCGG	2 cut(s)	136, 420
HphI	GGTGA	4 cut(s)	125, 208, 241, 842
Hpy166II	GTNNAC	3 cut(s)	678, 694, 877
Hpy188I	TCNGA	3 cut(s)	556, 793, 799
Hpy188III	TCNNGA	2 cut(s)	320, 899
Hpy8I	GTNNAC	3 cut(s)	678, 694, 877
Hpy99I	CGWCG	2 cut(s)	184, 215
HpyAV	CCTTC	4 cut(s)	406, 626, 768, 896
HpyCH4III	ACNGT	2 cut(s)	337, 589
HpyCH4IV	ACGT	3 cut(s)	25, 66, 674
HpyCH4V	TGCA	6 cut(s)	487, 585, 608, 746, 764, 889
HpyF10VI	GCNNNNNNNGC	5 cut(s)	461, 484, 731, 770, 848
HpyF3I	CTNAG	4 cut(s)	506, 564, 792, 798
HpySE526I	ACGT	3 cut(s)	25, 66, 674
Hsp92II	CATG	3 cut(s)	76, 411, 701
HspAI	GCGC	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	316, 703
LmnI	GCTCC	2 cut(s)	283, 564
Lsp1109I	GCAGC	3 cut(s)	208, 403, 835
MabI	ACCWGGT	1 cut(s)	892
MaeI	CTAG	1 cut(s)	852
MaeII	ACGT	3 cut(s)	25, 66, 674
MaeIII	GTNAC	2 cut(s)	214, 658
MalI	GATC	2 cut(s)	318, 705
MboI	GATC	2 cut(s)	316, 703
MboII	GAAGA	3 cut(s)	93, 108, 140
MhlI	GDGCHC	1 cut(s)	561
MluCI	AATT	4 cut(s)	33, 129, 190, 811
MlyI	GAGTC	2 cut(s)	413, 803
MseI	TTAA	2 cut(s)	5, 435
MslI	CAYNNNNRTG	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	276
MspI	CCGG	2 cut(s)	136, 420
MspR9I	CCNGG	1 cut(s)	894
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	894
MvnI	CGCG	2 cut(s)	228, 309
MwoI	GCNNNNNNNGC	5 cut(s)	461, 484, 731, 770, 848
NdeII	GATC	2 cut(s)	316, 703
NlaIII	CATG	3 cut(s)	76, 411, 701
NlaIV	GGNNCC	1 cut(s)	687
NmuCI	GTSAC	2 cut(s)	214, 658
PceI	AGGCCT	1 cut(s)	636
PcsI	WCGNNNNNNNCGW	1 cut(s)	200
PctI	GAATGC	1 cut(s)	241
PfeI	GAWTC	2 cut(s)	141, 270
PflFI	GACNNNGTC	1 cut(s)	698
PkrI	GCNGC	5 cut(s)	198, 201, 230, 418, 850
PleI	GAGTC	2 cut(s)	412, 802
PpsI	GAGTC	2 cut(s)	412, 802
Ppu21I	YACGTR	1 cut(s)	675
PpuMI	RGGWCCY	1 cut(s)	686
Psp124BI	GAGCTC	1 cut(s)	561
Psp5II	RGGWCCY	1 cut(s)	686
Psp6I	CCWGG	1 cut(s)	892
PspGI	CCWGG	1 cut(s)	892
PspN4I	GGNNCC	1 cut(s)	687
PspPI	GGNCC	1 cut(s)	686
PspPPI	RGGWCCY	1 cut(s)	686
PstI	CTGCAG	2 cut(s)	489, 766
PsyI	GACNNNGTC	1 cut(s)	698
PvuII	CAGCTG	1 cut(s)	276
RsaI	GTAC	4 cut(s)	28, 460, 483, 677
RsaNI	GTAC	4 cut(s)	27, 459, 482, 676
RseI	CAYNNNNRTG	1 cut(s)	77
SacI	GAGCTC	1 cut(s)	561
SaqAI	TTAA	2 cut(s)	5, 435
SatI	GCNGC	5 cut(s)	197, 200, 229, 417, 849
Sau3AI	GATC	2 cut(s)	316, 703
Sau96I	GGNCC	1 cut(s)	686
ScaI	AGTACT	1 cut(s)	483
SchI	GAGTC	2 cut(s)	413, 803
ScrFI	CCNGG	1 cut(s)	894
SduI	GDGCHC	1 cut(s)	561
SexAI	ACCWGGT	1 cut(s)	892
SfcI	CTRYAG	2 cut(s)	485, 762
SgrAI	CRCCGGYG	1 cut(s)	135
SinI	GGWCC	1 cut(s)	686
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	865
SmoI	CTYRAG	1 cut(s)	865
SnaBI	TACGTA	1 cut(s)	675
Sse9I	AATT	4 cut(s)	33, 129, 190, 811
SseBI	AGGCCT	1 cut(s)	636
SsiI	CCGC	2 cut(s)	200, 228
SspMI	CTAG	1 cut(s)	852
SstI	GAGCTC	1 cut(s)	561
StuI	AGGCCT	1 cut(s)	636
StyD4I	CCNGG	1 cut(s)	892
StyI	CCWWGG	1 cut(s)	843
TaaI	ACNGT	2 cut(s)	337, 589
TaiI	ACGT	3 cut(s)	28, 69, 677
TaqI	TCGA	3 cut(s)	179, 319, 702
TasI	AATT	4 cut(s)	33, 129, 190, 811
TatI	WGTACW	1 cut(s)	481
TauI	GCSGC	2 cut(s)	202, 231
TfiI	GAWTC	2 cut(s)	141, 270
Tru1I	TTAA	2 cut(s)	5, 435
Tru9I	TTAA	2 cut(s)	5, 435
TscAI	CASTG	1 cut(s)	891
TseFI	GTSAC	2 cut(s)	214, 658
TseI	GCWGC	3 cut(s)	196, 416, 848
Tsp45I	GTSAC	2 cut(s)	214, 658
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	891
Tth111I	GACNNNGTC	1 cut(s)	698
VpaK11BI	GGWCC	1 cut(s)	686
XapI	RAATTY	1 cut(s)	190
XspI	CTAG	1 cut(s)	852
ZrmI	AGTACT	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.