Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001400

Physical Location & Seq

Genomic Coordinates Forward (+)

25827280 .. 25831932

Gene Structure 4653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34880.t8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGTTCACATATCTCTTTCCTCTTCTTCTTCTTGTCCGCTACTTCACCGCCGAATCTTTCTTCCTTCAATCCATGCTTCTTCTTCTTCGGTTTCGTCGCCGCGGCCGAAAGTCGTCGTCACCAGAGAGCGTGGCAAGAATGCCAAGCTCATCGCCTCTCTGGCGAAGCAGGGAATCAGCTGTTTGGAACTTCCTCTCATCCAGCATACAAGGGGGCCGGATCGAGATAGGCTTTCTACTGTATTGACTGATACAGTATTTGACTGGATTGTCATAACATCCCCTGAAGCTGGTTCAGTCTTTCTGGAGTCATGGAAAATGACATCAAGCTTCTTCTTGGTCTTTAGGGATGCTGGAACTCCAAATGTTAAGGTGGGCGTCGTGGGGGCAGGTACAGCAAGCGTGTTTGAGGAAGTACTACAGTCATCAAAGACGTCCCTCAGTCTTGCCTTTGTGCCATCAAAAGCAACAGGCAAGGTTTTGGCTTCAGAGCTCCCTAGAAGTAGGAAAGACAAATGCACAGTACTATATCCTGCTTCTGCAAAAGCTGGCAATGAGATTGAGGAAGGCCTGTCCAATCGTGGATTTGAGGTCACGAGGCTCAATACATATACCACGGGACCTGTTGACCATGTCGATCAAATGGTTCTGAAGCAGGCTCTTTCTGCCCCTGTTGTTGCAGTTGCTTCTCCTTCTGCAGTTCGTGCTTGGGTCAATCTTATTTCCGAGTCTGAGCAATGGAATAATTCAGTTGCCTGTATTGGTGAGACAACTGCCAAGGCTGCTAGGAGACTAGGCTTGAGAAATGTTTACTATCCAGTGCAACCAGGTCTTGAAGGATGGGTGGATAGCATTGTTGAAGCACTGGGAGCAAGTGTCCATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004852 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006778 GO:0006779 GO:0006780 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046502 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

HEM4

Protein Analysis

296

Amino Acids

31.68

Weight (kDa)

9.21

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEM4	PF02602	50 - 271	1.2e-44	Uroporphyrinogen-III synthase HemD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26540 AT2G26540 AT2G26540
fragaria_vesca	FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880
malus_domestica	MD08G1106500.v1.1 MD15G1087100.v1.1
prunus_persica	Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1
pyrus_communis	pycom08g08790 pycom15g08200
rosa_chinensis	RchiOBHm_Chr6g0307161
rosa_laevigata	RLG00000004395 RLG00000010732
rosa_multiflora	Rmu_sc0001776.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011040 Rroxscaffold_2G00117190 Rroxscaffold_7G00161130
rosa_rugosa	Rorug06G0356900 Rorug06G0357000 Rorug06G0357000
rosa_samantha	Rh1BG065500 Rh6AG227000 Rh6AG467900 Rh6BG432600 Rh6CG483100 Rh6DG469600
rosa_wichuraiana	Rw6G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	269
AatII	GACGTC	1 cut(s)	437
Acc36I	ACCTGC	1 cut(s)	380
AccII	CGCG	1 cut(s)	103
AciI	CCGC	4 cut(s)	38, 49, 101, 103
AclWI	GGATC	1 cut(s)	228
AcoI	YGGCCR	1 cut(s)	104
AcuI	CTGAAG	3 cut(s)	306, 471, 671
AcyI	GRCGYC	2 cut(s)	378, 434
AfaI	GTAC	3 cut(s)	394, 417, 525
AfiI	CCNNNNNNNGG	1 cut(s)	290
AgsI	TTSAA	3 cut(s)	69, 836, 860
AjnI	CCWGG	1 cut(s)	826
AluBI	AGCT	6 cut(s)	148, 180, 290, 330, 493, 548
AluI	AGCT	6 cut(s)	148, 180, 290, 330, 493, 548
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	2 cut(s)	761, 784
AlwI	GGATC	1 cut(s)	228
AoxI	GGCC	3 cut(s)	104, 215, 568
ApeKI	GCWGC	1 cut(s)	782
AspS9I	GGNCC	2 cut(s)	215, 620
AsuHPI	GGTGA	3 cut(s)	38, 112, 776
AvaII	GGWCC	1 cut(s)	620
BanII	GRGCYC	1 cut(s)	495
BauI	CACGAG	1 cut(s)	595
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	1 cut(s)	769
BccI	CCATC	2 cut(s)	466, 834
BciT130I	CCWGG	1 cut(s)	828
BcoDI	GTCTC	2 cut(s)	761, 784
BfaI	CTAG	3 cut(s)	498, 786, 794
BfmI	CTRYAG	2 cut(s)	419, 696
BfuAI	ACCTGC	1 cut(s)	380
BglI	GCCNNNNNGGC	1 cut(s)	161
BisI	GCNGC	3 cut(s)	101, 104, 783
BlsI	GCNGC	3 cut(s)	102, 105, 784
BmcAI	AGTACT	2 cut(s)	417, 525
Bme1390I	CCNGG	1 cut(s)	828
Bme18I	GGWCC	1 cut(s)	620
BmgT120I	GGNCC	2 cut(s)	215, 620
BmiI	GGNNCC	2 cut(s)	216, 621
BmrFI	CCNGG	1 cut(s)	828
BmrI	ACTGGG	1 cut(s)	875
BmsI	GCATC	1 cut(s)	340
BmuI	ACTGGG	1 cut(s)	875
BpmI	CTGGAG	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	820
BsaHI	GRCGYC	2 cut(s)	378, 434
BsaJI	CCNNGG	3 cut(s)	101, 615, 777
BsaXI	ACNNNNNCTCC	1 cut(s)	861
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse1I	ACTGG	3 cut(s)	269, 818, 870
Bse3DI	GCAATG	2 cut(s)	559, 743
BseBI	CCWGG	1 cut(s)	828
BseDI	CCNNGG	3 cut(s)	101, 615, 777
BseGI	GGATG	4 cut(s)	198, 278, 355, 845
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	2 cut(s)	559, 743
BseMII	CTCAG	2 cut(s)	454, 723
BseNI	ACTGG	3 cut(s)	269, 818, 870
BseX3I	CGGCCG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	769
Bsh1236I	CGCG	1 cut(s)	103
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	3 cut(s)	106, 217, 570
BsiEI	CGRYCG	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	495
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	2 cut(s)	421, 633
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	2 cut(s)	761, 784
BsmFI	GGGAC	2 cut(s)	421, 633
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	3 cut(s)	106, 217, 570
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp143I	GATC	2 cut(s)	220, 637
BspACI	CCGC	4 cut(s)	38, 49, 101, 103
BspANI	GGCC	3 cut(s)	106, 217, 570
BspCNI	CTCAG	2 cut(s)	453, 724
BspFNI	CGCG	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	216, 621
BspMAI	CTGCAG	1 cut(s)	700
BspMI	ACCTGC	1 cut(s)	380
BspPI	GGATC	1 cut(s)	228
BsrDI	GCAATG	2 cut(s)	559, 743
BsrI	ACTGG	3 cut(s)	269, 818, 870
BssECI	CCNNGG	3 cut(s)	101, 615, 777
BssMI	GATC	2 cut(s)	220, 637
BssNI	GRCGYC	2 cut(s)	378, 434
BssSI	CACGAG	1 cut(s)	595
BssT1I	CCWWGG	1 cut(s)	777
Bst2BI	CACGAG	1 cut(s)	595
Bst2UI	CCWGG	1 cut(s)	828
Bst4CI	ACNGT	4 cut(s)	241, 256, 423, 523
Bst6I	CTCTTC	1 cut(s)	28
BstACI	GRCGYC	2 cut(s)	378, 434
BstAPI	GCANNNNNTGC	1 cut(s)	704
BstC8I	GCNNGC	3 cut(s)	400, 550, 657
BstDEI	CTNAG	2 cut(s)	440, 732
BstDSI	CCRYGG	2 cut(s)	101, 615
BstF5I	GGATG	4 cut(s)	198, 278, 355, 845
BstFNI	CGCG	1 cut(s)	103
BstKTI	GATC	2 cut(s)	223, 640
BstMAI	GTCTC	2 cut(s)	761, 784
BstMBI	GATC	2 cut(s)	220, 637
BstMCI	CGRYCG	1 cut(s)	107
BstMWI	GCNNNNNNNGC	6 cut(s)	161, 395, 665, 704, 782, 869
BstNI	CCWGG	1 cut(s)	828
BstSCI	CCNGG	1 cut(s)	826
BstSFI	CTRYAG	2 cut(s)	419, 696
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	769
BstZI	CGGCCG	1 cut(s)	104
BsuRI	GGCC	3 cut(s)	106, 217, 570
BtgI	CCRYGG	2 cut(s)	101, 615
BtgZI	GCGATG	1 cut(s)	136
BtsCI	GGATG	4 cut(s)	198, 278, 355, 845
BtsIMutI	CAGTG	2 cut(s)	825, 863
BveI	ACCTGC	1 cut(s)	380
Cac8I	GCNNGC	3 cut(s)	400, 550, 657
Cfr13I	GGNCC	2 cut(s)	215, 620
Cfr42I	CCGCGG	1 cut(s)	104
CseI	GACGC	1 cut(s)	367
CsiI	ACCWGGT	1 cut(s)	826
Csp6I	GTAC	3 cut(s)	393, 416, 524
CviAII	CATG	3 cut(s)	74, 312, 632
CviQI	GTAC	3 cut(s)	393, 416, 524
DdeI	CTNAG	2 cut(s)	440, 732
DpnI	GATC	2 cut(s)	222, 639
DpnII	GATC	2 cut(s)	220, 637
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	104
EagI	CGGCCG	1 cut(s)	104
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
Ecl136II	GAGCTC	1 cut(s)	493
EclXI	CGGCCG	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	777
Eco147I	AGGCCT	1 cut(s)	570
Eco24I	GRGCYC	1 cut(s)	495
Eco47I	GGWCC	1 cut(s)	620
Eco52I	CGGCCG	1 cut(s)	104
Eco53kI	GAGCTC	1 cut(s)	493
Eco57I	CTGAAG	3 cut(s)	306, 471, 671
EcoICRI	GAGCTC	1 cut(s)	493
EcoO109I	RGGNCCY	1 cut(s)	620
EcoRII	CCWGG	1 cut(s)	826
EcoT14I	CCWWGG	1 cut(s)	777
EcoT38I	GRGCYC	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	777
FaeI	CATG	3 cut(s)	77, 315, 635
FaiI	YATR	9 cut(s)	11, 75, 207, 275, 313, 529, 610, 612, 633
FaqI	GGGAC	2 cut(s)	421, 633
FatI	CATG	3 cut(s)	73, 311, 631
Fnu4HI	GCNGC	3 cut(s)	101, 104, 783
FokI	GGATG	4 cut(s)	185, 265, 362, 852
FriOI	GRGCYC	1 cut(s)	495
Fsp4HI	GCNGC	3 cut(s)	101, 104, 783
FspBI	CTAG	3 cut(s)	498, 786, 794
GluI	GCNGC	3 cut(s)	101, 104, 783
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	3 cut(s)	106, 217, 570
HapII	CCGG	1 cut(s)	218
HgaI	GACGC	1 cut(s)	367
Hin1I	GRCGYC	2 cut(s)	378, 434
Hin1II	CATG	3 cut(s)	77, 315, 635
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HindIII	AAGCTT	1 cut(s)	328
HinfI	GANTC	4 cut(s)	54, 174, 308, 728
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	3 cut(s)	38, 112, 776
Hpy166II	GTNNAC	3 cut(s)	7, 628, 811
Hpy188I	TCNGA	4 cut(s)	490, 651, 727, 733
Hpy188III	TCNNGA	4 cut(s)	224, 305, 595, 833
Hpy8I	GTNNAC	3 cut(s)	7, 628, 811
Hpy99I	CGWCG	3 cut(s)	100, 119, 383
HpyAV	CCTTC	4 cut(s)	75, 560, 702, 830
HpyCH4III	ACNGT	4 cut(s)	241, 256, 423, 523
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	5 cut(s)	519, 542, 680, 698, 823
HpyF10VI	GCNNNNNNNGC	6 cut(s)	161, 395, 665, 704, 782, 869
HpyF3I	CTNAG	2 cut(s)	440, 732
HpySE526I	ACGT	1 cut(s)	434
Hsp92I	GRCGYC	2 cut(s)	378, 434
Hsp92II	CATG	3 cut(s)	77, 315, 635
KspI	CCGCGG	1 cut(s)	104
Kzo9I	GATC	2 cut(s)	220, 637
LmnI	GCTCC	2 cut(s)	498, 869
Lsp1109I	GCAGC	1 cut(s)	769
LweI	GCATC	1 cut(s)	340
MabI	ACCWGGT	1 cut(s)	826
MaeI	CTAG	3 cut(s)	498, 786, 794
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	2 cut(s)	118, 592
MalI	GATC	2 cut(s)	222, 639
MboI	GATC	2 cut(s)	220, 637
MboII	GAAGA	8 cut(s)	15, 18, 21, 53, 72, 75, 78, 325
MhlI	GDGCHC	1 cut(s)	495
MluCI	AATT	1 cut(s)	745
MlyI	GAGTC	2 cut(s)	317, 737
MnlI	CCTC	8 cut(s)	31, 166, 204, 403, 449, 556, 583, 591
MseI	TTAA	1 cut(s)	369
MspA1I	CMGCKG	2 cut(s)	103, 180
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	828
Mva1269I	GAATGC	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	828
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	6 cut(s)	161, 395, 665, 704, 782, 869
NdeII	GATC	2 cut(s)	220, 637
NlaIII	CATG	3 cut(s)	77, 315, 635
NlaIV	GGNNCC	2 cut(s)	216, 621
NmuCI	GTSAC	2 cut(s)	118, 592
PceI	AGGCCT	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PctI	GAATGC	1 cut(s)	145
PfeI	GAWTC	2 cut(s)	54, 174
PflFI	GACNNNGTC	1 cut(s)	632
PkrI	GCNGC	3 cut(s)	102, 105, 784
PleI	GAGTC	2 cut(s)	316, 736
PpsI	GAGTC	2 cut(s)	316, 736
PpuMI	RGGWCCY	1 cut(s)	620
Psp124BI	GAGCTC	1 cut(s)	495
Psp5II	RGGWCCY	1 cut(s)	620
Psp6I	CCWGG	1 cut(s)	826
PspGI	CCWGG	1 cut(s)	826
PspN4I	GGNNCC	2 cut(s)	216, 621
PspPI	GGNCC	2 cut(s)	215, 620
PspPPI	RGGWCCY	1 cut(s)	620
PstI	CTGCAG	1 cut(s)	700
PsyI	GACNNNGTC	1 cut(s)	632
PvuII	CAGCTG	1 cut(s)	180
RsaI	GTAC	3 cut(s)	394, 417, 525
RsaNI	GTAC	3 cut(s)	393, 416, 524
SacI	GAGCTC	1 cut(s)	495
SacII	CCGCGG	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	3 cut(s)	101, 104, 783
Sau3AI	GATC	2 cut(s)	220, 637
Sau96I	GGNCC	2 cut(s)	215, 620
ScaI	AGTACT	2 cut(s)	417, 525
SchI	GAGTC	2 cut(s)	317, 737
ScrFI	CCNGG	1 cut(s)	828
SduI	GDGCHC	1 cut(s)	495
SexAI	ACCWGGT	1 cut(s)	826
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	2 cut(s)	419, 696
Sfr303I	CCGCGG	1 cut(s)	104
SgrBI	CCGCGG	1 cut(s)	104
SinI	GGWCC	1 cut(s)	620
SmlI	CTYRAG	1 cut(s)	799
SmoI	CTYRAG	1 cut(s)	799
Sse9I	AATT	1 cut(s)	745
SseBI	AGGCCT	1 cut(s)	570
SsiI	CCGC	4 cut(s)	38, 49, 101, 103
SspMI	CTAG	3 cut(s)	498, 786, 794
SstI	GAGCTC	1 cut(s)	495
StuI	AGGCCT	1 cut(s)	570
StyD4I	CCNGG	1 cut(s)	826
StyI	CCWWGG	1 cut(s)	777
TaaI	ACNGT	4 cut(s)	241, 256, 423, 523
TaiI	ACGT	1 cut(s)	437
TaqI	TCGA	2 cut(s)	223, 636
TasI	AATT	1 cut(s)	745
TatI	WGTACW	2 cut(s)	415, 523
TauI	GCSGC	2 cut(s)	103, 106
TfiI	GAWTC	2 cut(s)	54, 174
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	2 cut(s)	825, 870
TseFI	GTSAC	2 cut(s)	118, 592
TseI	GCWGC	1 cut(s)	782
Tsp45I	GTSAC	2 cut(s)	118, 592
TspRI	CASTG	2 cut(s)	825, 870
Tth111I	GACNNNGTC	1 cut(s)	632
VpaK11BI	GGWCC	1 cut(s)	620
XspI	CTAG	3 cut(s)	498, 786, 794
ZraI	GACGTC	1 cut(s)	435
ZrmI	AGTACT	2 cut(s)	417, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.