Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001400

Physical Location & Seq

Genomic Coordinates Reverse (-)

58988182 .. 58991919

Gene Structure 3738 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004395

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAACTCCCACCCTAGGCTCACCTCCCCATCGTCTCCGCCTCACCACGCGAACGGCTATCTTCTCACACATGCGAAGCAGGGAATCAGCTGTTTGGAACTTCCCCTCATCCAGCATACAAGGGGGCCTGATCGAGATAGGCTTTCTACTGCAGTAAATGCAGATACTGCATTTGACTGGATTGTCATAACTTCCCCTGAAGCTGGTTCAGTCTTTCTGGAGTCATGGAAGAAGTACGTACTGCAGTCATCAAAGAAATCCCTCAGTCTTGCCTTTGTGCCATCAAAAGCAACAGCCAAGGTTTTGGCTTCAGAGCTCCCTAAGAATAGGAAAGACAAAGGCAAAGTCCTATATCCTGCTTCTGCAAAAGCTGGCAATGAGATTGGAGGGTTTGAAGCCAATAGATGTTGCAAATGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004852 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006778 GO:0006779 GO:0006780 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046502 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

HEM4

Protein Analysis

141

Amino Acids

15.22

Weight (kDa)

9.59

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEM4	PF02602	25 - 128	3.9e-12	Uroporphyrinogen-III synthase HemD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26540 AT2G26540 AT2G26540
fragaria_vesca	FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880
malus_domestica	MD08G1106500.v1.1 MD15G1087100.v1.1
prunus_persica	Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1
pyrus_communis	pycom08g08790 pycom15g08200
rosa_chinensis	RchiOBHm_Chr6g0307161
rosa_laevigata	RLG00000004395 RLG00000010732
rosa_multiflora	Rmu_sc0001776.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011040 Rroxscaffold_2G00117190 Rroxscaffold_7G00161130
rosa_rugosa	Rorug06G0356900 Rorug06G0357000 Rorug06G0357000
rosa_samantha	Rh1BG065500 Rh6AG227000 Rh6AG467900 Rh6BG432600 Rh6CG483100 Rh6DG469600
rosa_wichuraiana	Rw6G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
AccII	CGCG	1 cut(s)	50
AciI	CCGC	1 cut(s)	38
AcuI	CTGAAG	2 cut(s)	219, 294
AfaI	GTAC	2 cut(s)	236, 240
AfiI	CCNNNNNNNGG	2 cut(s)	15, 203
AgsI	TTSAA	1 cut(s)	395
AluBI	AGCT	4 cut(s)	90, 203, 316, 371
AluI	AGCT	4 cut(s)	90, 203, 316, 371
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	39
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	125
ArsI	GACNNNNNNTTYG	2 cut(s)	330, 362
AspA2I	CCTAGG	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	125
AsuHPI	GGTGA	2 cut(s)	13, 35
AvrII	CCTAGG	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	318
BccI	CCATC	2 cut(s)	37, 289
BceAI	ACGGC	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	2 cut(s)	150, 242
BlnI	CCTAGG	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	126
BpmI	CTGGAG	1 cut(s)	239
BsaAI	YACGTR	1 cut(s)	238
BsaJI	CCNNGG	2 cut(s)	14, 297
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 203
Bse1I	ACTGG	1 cut(s)	182
Bse3DI	GCAATG	1 cut(s)	382
BseDI	CCNNGG	2 cut(s)	14, 297
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	2 cut(s)	15, 203
BseMI	GCAATG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	277
BseNI	ACTGG	1 cut(s)	182
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	318
BslI	CCNNNNNNNGG	2 cut(s)	15, 203
BsmAI	GTCTC	1 cut(s)	39
BsmBI	CGTCTC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	1 cut(s)	276
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	1 cut(s)	126
BspMAI	CTGCAG	2 cut(s)	154, 246
BsrDI	GCAATG	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	2 cut(s)	14, 297
BssMI	GATC	1 cut(s)	130
BssT1I	CCWWGG	2 cut(s)	14, 297
BstAPI	GCANNNNNTGC	2 cut(s)	158, 167
BstBAI	YACGTR	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	2 cut(s)	263, 321
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	1 cut(s)	50
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 167
BstNSI	RCATGY	1 cut(s)	74
BstSFI	CTRYAG	2 cut(s)	150, 242
BstSNI	TACGTA	1 cut(s)	238
BstUI	CGCG	1 cut(s)	50
BstXI	CCANNNNNNTGG	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	373
CaiI	CAGNNNCTG	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	125
Csp6I	GTAC	2 cut(s)	235, 239
CviAII	CATG	2 cut(s)	71, 225
CviQI	GTAC	2 cut(s)	235, 239
DdeI	CTNAG	2 cut(s)	263, 321
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
EciI	GGCGGA	1 cut(s)	27
Ecl136II	GAGCTC	1 cut(s)	316
Eco105I	TACGTA	1 cut(s)	238
Eco130I	CCWWGG	2 cut(s)	14, 297
Eco24I	GRGCYC	1 cut(s)	318
Eco53kI	GAGCTC	1 cut(s)	316
Eco57I	CTGAAG	2 cut(s)	219, 294
EcoICRI	GAGCTC	1 cut(s)	316
EcoO109I	RGGNCCY	1 cut(s)	125
EcoT14I	CCWWGG	2 cut(s)	14, 297
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	2 cut(s)	14, 297
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	2 cut(s)	74, 228
FaiI	YATR	5 cut(s)	72, 117, 188, 226, 352
FatI	CATG	2 cut(s)	70, 224
FokI	GGATG	1 cut(s)	95
FriOI	GRGCYC	1 cut(s)	318
FspBI	CTAG	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	127
Hin1II	CATG	2 cut(s)	74, 228
HinfI	GANTC	2 cut(s)	84, 221
HphI	GGTGA	2 cut(s)	13, 35
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	2 cut(s)	134, 218
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	7 cut(s)	152, 161, 170, 244, 365, 411, 417
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 167
HpyF3I	CTNAG	2 cut(s)	263, 321
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	74, 228
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	321
LpnPI	CCDG	9 cut(s)	65, 125, 141, 163, 189, 203, 210, 357, 369
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	237
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	2 cut(s)	53, 241
MhlI	GDGCHC	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	5 cut(s)	34, 51, 116, 272, 380
MspA1I	CMGCKG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	158, 167
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	74, 228
NlaIV	GGNNCC	1 cut(s)	126
NspI	RCATGY	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	84
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Ppu21I	YACGTR	1 cut(s)	238
Psp124BI	GAGCTC	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	125
PstI	CTGCAG	2 cut(s)	154, 246
PstNI	CAGNNNCTG	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	90
RsaI	GTAC	2 cut(s)	236, 240
RsaNI	GTAC	2 cut(s)	235, 239
SacI	GAGCTC	1 cut(s)	318
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	125
SchI	GAGTC	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	7 cut(s)	26, 92, 205, 240, 303, 318, 373
SfcI	CTRYAG	2 cut(s)	150, 242
SnaBI	TACGTA	1 cut(s)	238
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	15
SstI	GAGCTC	1 cut(s)	318
StyI	CCWWGG	2 cut(s)	14, 297
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	133
TfiI	GAWTC	1 cut(s)	84
TspDTI	ATGAA	1 cut(s)	17
XceI	RCATGY	1 cut(s)	74
XmaJI	CCTAGG	1 cut(s)	14
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.