Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001400

Physical Location & Seq

Genomic Coordinates Forward (+)

3983149 .. 3987638

Gene Structure 4490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010732

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCACAGATTCCCCTTTCCGCTTCCTCTCCCTACTCTCCTTCTTCTTGTCCTCTAATTCACCGGCGAATCTTTCTTCCTTGTGCTTTTTCAATCCAAGCTACCTCGACTTCAAATTCGCAGCCGCCGAAAGTCGTCGTCACCAGAGAGCGCGGCAAGAATGCCAAACTCATCACCTCTCTGGCGAAGCAGGGAATCAGCTGTTTGGAACTTCCCCTCATCCAGCATACACGGGGGCCTGATCGAGATAGGCTTTCTACTGTATTGACTGATACTGCGTTTGACTGGATTGTCATAACTTCCCCTGAAGCTGGTTCAGTCTTTTTGGAGTCATGGAAGGCTGCCGGAACTCCAAATGTTAAGGTTGGTGTCGTCGGGGCTGGTACAGCAAGTGTCTTTGAGCAAGTACTGCAGTCATCAAAGAAATCCCTCAGTCTTGCCTTTGTGCCATCAAAAGCAACAGGCAAGGTTTTGGCTTCAGAGCTTCCTAAGAATAGGAAAGACAAATGCACAGTCCTATATCCTGCTTCTACAAAAGCTGGCAATGAGATTGAGGAAGGGCTGTCCAATCGTGGATTTGAGGTCACAAGGCTAAATACGTACACCACGGGACCTGTTGACCATGTCGACCAAATGGTTTTGAAGCAGGCTCTTTCTGCCCCTGTTGTTGCAGTTGCTTCTCCTTCTGCAGTTGGTGCTTGGGTCAATCTTATTTCTGAGTCTGAGCAATGGAACAATTCGGTTGCCTGTATTGGTGAGACAACTGCCAAGGCTGCTAGGAGATTAGGCTTGAGAAATGTTTACTATCCAGTGCAACCAGGTCTTGAAGGATGGGTGGATAGCATTGTTGAAGCATTGGGAGCAAATGTCCATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004852 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006725 GO:0006778 GO:0006779 GO:0006780 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046502 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

HEM4

Protein Analysis

293

Amino Acids

31.14

Weight (kDa)

9.08

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEM4	PF02602	57 - 279	1.6e-44	Uroporphyrinogen-III synthase HemD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26540 AT2G26540 AT2G26540
fragaria_vesca	FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880 FvH4_2g34880
malus_domestica	MD08G1106500.v1.1 MD15G1087100.v1.1
prunus_persica	Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1 Prupe.1G440800_v2.0.a1
pyrus_communis	pycom08g08790 pycom15g08200
rosa_chinensis	RchiOBHm_Chr6g0307161
rosa_laevigata	RLG00000004395 RLG00000010732
rosa_multiflora	Rmu_sc0001776.1_g000009
rosa_roxburghii	Rroxscaffold_1G00011040 Rroxscaffold_2G00117190 Rroxscaffold_7G00161130
rosa_rugosa	Rorug06G0356900 Rorug06G0357000 Rorug06G0357000
rosa_samantha	Rh1BG065500 Rh6AG227000 Rh6AG467900 Rh6BG432600 Rh6CG483100 Rh6DG469600
rosa_wichuraiana	Rw6G040770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
AccI	GTMKAC	1 cut(s)	627
AccII	CGCG	1 cut(s)	153
AciI	CCGC	3 cut(s)	21, 125, 153
AcsI	RAATTY	1 cut(s)	115
AcuI	CTGAAG	2 cut(s)	327, 462
AfaI	GTAC	3 cut(s)	385, 408, 602
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	5 cut(s)	93, 114, 643, 827, 851
AjnI	CCWGG	1 cut(s)	817
AluBI	AGCT	5 cut(s)	101, 201, 311, 484, 539
AluI	AGCT	5 cut(s)	101, 201, 311, 484, 539
Alw26I	GTCTC	1 cut(s)	752
AoxI	GGCC	1 cut(s)	236
ApeKI	GCWGC	3 cut(s)	121, 341, 773
ApoI	RAATTY	1 cut(s)	115
ArsI	GACNNNNNNTTYG	4 cut(s)	100, 132, 498, 530
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	2 cut(s)	236, 611
AsuHPI	GGTGA	4 cut(s)	53, 133, 166, 767
AvaII	GGWCC	1 cut(s)	611
BbvI	GCAGC	3 cut(s)	133, 328, 760
BccI	CCATC	2 cut(s)	457, 825
BciT130I	CCWGG	1 cut(s)	819
BcoDI	GTCTC	1 cut(s)	752
BfaI	CTAG	1 cut(s)	777
BfmI	CTRYAG	2 cut(s)	410, 687
BisI	GCNGC	5 cut(s)	122, 125, 154, 342, 774
BlsI	GCNGC	5 cut(s)	123, 126, 155, 343, 775
BmcAI	AGTACT	1 cut(s)	408
Bme1390I	CCNGG	1 cut(s)	819
Bme18I	GGWCC	1 cut(s)	611
BmgT120I	GGNCC	2 cut(s)	236, 611
BmiI	GGNNCC	2 cut(s)	237, 612
BmrFI	CCNGG	1 cut(s)	819
BpuEI	CTTGAG	1 cut(s)	811
BsaAI	YACGTR	1 cut(s)	600
BsaJI	CCNNGG	2 cut(s)	606, 768
BsaXI	ACNNNNNCTCC	1 cut(s)	852
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse118I	RCCGGY	1 cut(s)	63
Bse1I	ACTGG	2 cut(s)	290, 809
Bse3DI	GCAATG	2 cut(s)	550, 734
BseBI	CCWGG	1 cut(s)	819
BseDI	CCNNGG	2 cut(s)	606, 768
BseGI	GGATG	2 cut(s)	219, 836
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMI	GCAATG	2 cut(s)	550, 734
BseMII	CTCAG	3 cut(s)	445, 708, 714
BseNI	ACTGG	2 cut(s)	290, 809
BseXI	GCAGC	3 cut(s)	133, 328, 760
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	238
BsiSI	CCGG	2 cut(s)	64, 345
BslFI	GGGAC	1 cut(s)	624
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmAI	GTCTC	1 cut(s)	752
BsmFI	GGGAC	1 cut(s)	624
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	241
BspACI	CCGC	3 cut(s)	21, 125, 153
BspANI	GGCC	1 cut(s)	238
BspCNI	CTCAG	3 cut(s)	444, 709, 715
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	2 cut(s)	237, 612
BspMAI	CTGCAG	2 cut(s)	414, 691
BsrDI	GCAATG	2 cut(s)	550, 734
BsrFI	RCCGGY	1 cut(s)	63
BsrI	ACTGG	2 cut(s)	290, 809
BssAI	RCCGGY	1 cut(s)	63
BssECI	CCNNGG	2 cut(s)	606, 768
BssMI	GATC	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	768
Bst2UI	CCWGG	1 cut(s)	819
Bst4CI	ACNGT	2 cut(s)	262, 514
BstAPI	GCANNNNNTGC	2 cut(s)	409, 695
BstBAI	YACGTR	1 cut(s)	600
BstC8I	GCNNGC	2 cut(s)	541, 648
BstDEI	CTNAG	4 cut(s)	431, 489, 717, 723
BstDSI	CCRYGG	1 cut(s)	606
BstF5I	GGATG	2 cut(s)	219, 836
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	1 cut(s)	244
BstMAI	GTCTC	1 cut(s)	752
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	6 cut(s)	386, 409, 656, 695, 773, 860
BstNI	CCWGG	1 cut(s)	819
BstSCI	CCNGG	1 cut(s)	817
BstSFI	CTRYAG	2 cut(s)	410, 687
BstSNI	TACGTA	1 cut(s)	600
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	3 cut(s)	133, 328, 760
BsuRI	GGCC	1 cut(s)	238
BtgI	CCRYGG	1 cut(s)	606
BtsCI	GGATG	2 cut(s)	219, 836
BtsIMutI	CAGTG	1 cut(s)	816
Cac8I	GCNNGC	2 cut(s)	541, 648
CfoI	GCGC	1 cut(s)	153
Cfr10I	RCCGGY	1 cut(s)	63
Cfr13I	GGNCC	2 cut(s)	236, 611
CsiI	ACCWGGT	1 cut(s)	817
Csp6I	GTAC	3 cut(s)	384, 407, 601
CviAII	CATG	2 cut(s)	333, 623
CviQI	GTAC	3 cut(s)	384, 407, 601
DdeI	CTNAG	4 cut(s)	431, 489, 717, 723
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
Eco105I	TACGTA	1 cut(s)	600
Eco130I	CCWWGG	1 cut(s)	768
Eco47I	GGWCC	1 cut(s)	611
Eco57I	CTGAAG	2 cut(s)	327, 462
EcoO109I	RGGNCCY	2 cut(s)	236, 611
EcoRII	CCWGG	1 cut(s)	817
EcoT14I	CCWWGG	1 cut(s)	768
ErhI	CCWWGG	1 cut(s)	768
FaeI	CATG	2 cut(s)	336, 626
FaiI	YATR	5 cut(s)	228, 296, 334, 520, 624
FaqI	GGGAC	1 cut(s)	624
FatI	CATG	2 cut(s)	332, 622
FblI	GTMKAC	1 cut(s)	627
Fnu4HI	GCNGC	5 cut(s)	122, 125, 154, 342, 774
FokI	GGATG	2 cut(s)	206, 843
Fsp4HI	GCNGC	5 cut(s)	122, 125, 154, 342, 774
FspBI	CTAG	1 cut(s)	777
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	5 cut(s)	122, 125, 154, 342, 774
HaeIII	GGCC	1 cut(s)	238
HapII	CCGG	2 cut(s)	64, 345
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	2 cut(s)	336, 626
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HincII	GTYRAC	2 cut(s)	619, 628
HindII	GTYRAC	2 cut(s)	619, 628
HinfI	GANTC	5 cut(s)	10, 69, 195, 329, 719
HpaII	CCGG	2 cut(s)	64, 345
HphI	GGTGA	4 cut(s)	53, 133, 166, 767
Hpy166II	GTNNAC	4 cut(s)	603, 619, 628, 802
Hpy188I	TCNGA	3 cut(s)	481, 718, 724
Hpy188III	TCNNGA	2 cut(s)	245, 824
Hpy8I	GTNNAC	4 cut(s)	603, 619, 628, 802
Hpy99I	CGWCG	2 cut(s)	140, 377
HpyAV	CCTTC	5 cut(s)	51, 331, 551, 693, 821
HpyCH4III	ACNGT	2 cut(s)	262, 514
HpyCH4IV	ACGT	1 cut(s)	599
HpyCH4V	TGCA	5 cut(s)	412, 510, 671, 689, 814
HpyF10VI	GCNNNNNNNGC	6 cut(s)	386, 409, 656, 695, 773, 860
HpyF3I	CTNAG	4 cut(s)	431, 489, 717, 723
HpySE526I	ACGT	1 cut(s)	599
Hsp92II	CATG	2 cut(s)	336, 626
HspAI	GCGC	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	241
LmnI	GCTCC	1 cut(s)	860
Lsp1109I	GCAGC	3 cut(s)	133, 328, 760
MabI	ACCWGGT	1 cut(s)	817
MaeI	CTAG	1 cut(s)	777
MaeII	ACGT	1 cut(s)	599
MaeIII	GTNAC	2 cut(s)	139, 583
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	2 cut(s)	36, 68
MluCI	AATT	3 cut(s)	57, 115, 736
MlyI	GAGTC	2 cut(s)	338, 728
MnlI	CCTC	8 cut(s)	37, 63, 115, 187, 227, 440, 547, 574
MseI	TTAA	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	201
MspI	CCGG	2 cut(s)	64, 345
MspR9I	CCNGG	1 cut(s)	819
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	819
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	6 cut(s)	386, 409, 656, 695, 773, 860
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	2 cut(s)	336, 626
NlaIV	GGNNCC	2 cut(s)	237, 612
NmuCI	GTSAC	2 cut(s)	139, 583
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PctI	GAATGC	1 cut(s)	166
PfeI	GAWTC	3 cut(s)	10, 69, 195
PflFI	GACNNNGTC	1 cut(s)	623
PkrI	GCNGC	5 cut(s)	123, 126, 155, 343, 775
PleI	GAGTC	2 cut(s)	337, 727
PpsI	GAGTC	2 cut(s)	337, 727
Ppu21I	YACGTR	1 cut(s)	600
PpuMI	RGGWCCY	1 cut(s)	611
Psp5II	RGGWCCY	1 cut(s)	611
Psp6I	CCWGG	1 cut(s)	817
PspGI	CCWGG	1 cut(s)	817
PspN4I	GGNNCC	2 cut(s)	237, 612
PspPI	GGNCC	2 cut(s)	236, 611
PspPPI	RGGWCCY	1 cut(s)	611
PstI	CTGCAG	2 cut(s)	414, 691
PsyI	GACNNNGTC	1 cut(s)	623
PvuII	CAGCTG	1 cut(s)	201
RsaI	GTAC	3 cut(s)	385, 408, 602
RsaNI	GTAC	3 cut(s)	384, 407, 601
SalI	GTCGAC	1 cut(s)	626
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	5 cut(s)	122, 125, 154, 342, 774
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	2 cut(s)	236, 611
ScaI	AGTACT	1 cut(s)	408
SchI	GAGTC	2 cut(s)	338, 728
ScrFI	CCNGG	1 cut(s)	819
SexAI	ACCWGGT	1 cut(s)	817
SfcI	CTRYAG	2 cut(s)	410, 687
SgrAI	CRCCGGYG	1 cut(s)	63
SinI	GGWCC	1 cut(s)	611
SmlI	CTYRAG	1 cut(s)	790
SmoI	CTYRAG	1 cut(s)	790
SnaBI	TACGTA	1 cut(s)	600
Sse9I	AATT	3 cut(s)	57, 115, 736
SsiI	CCGC	3 cut(s)	21, 125, 153
SspMI	CTAG	1 cut(s)	777
StyD4I	CCNGG	1 cut(s)	817
StyI	CCWWGG	1 cut(s)	768
TaaI	ACNGT	2 cut(s)	262, 514
TaiI	ACGT	1 cut(s)	602
TaqI	TCGA	3 cut(s)	107, 244, 627
TasI	AATT	3 cut(s)	57, 115, 736
TatI	WGTACW	1 cut(s)	406
TauI	GCSGC	2 cut(s)	127, 156
TfiI	GAWTC	3 cut(s)	10, 69, 195
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	1 cut(s)	816
TseFI	GTSAC	2 cut(s)	139, 583
TseI	GCWGC	3 cut(s)	121, 341, 773
Tsp45I	GTSAC	2 cut(s)	139, 583
TspRI	CASTG	1 cut(s)	816
Tth111I	GACNNNGTC	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	611
XapI	RAATTY	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	627
XspI	CTAG	1 cut(s)	777
ZrmI	AGTACT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.