AT2G26930

GHMP kinases N terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005876
Physical Location & Seq
Reverse (-)
11491707 .. 11494290
2584 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26930.1

Sequence Viewer

Length: 1152 bp
ATGGCAACGGCTTCTCCTCCATTTATCTCAACTCTCAGCTTCACTCACTCTTCTTTCAAAACTTCTTCTTCTTCTTCATTTTCTCCGAAGCTTCTTCGACCCCTCTTAAGCTTTTCCGTCAAAGCTTCCAGAAAGCAAGTAGAGATAGTGTTTGATCCTGATGAGAGGCTTAATAAGATAGGTGATGATGTTGACAAAGAAGCTCCTTTGTCCAGGCTTAAGCTCTTCTCACCTTGCAAGATCAATGTTTTCTTGAGGATCACCGGAAAGCGAGAAGATGGGTTTCATGATTTAGCCTCTTTGTTTCATGTGATTAGCTTAGGAGACACTATTAAATTCTCATTGTCACCATCAAAGTCTAAAGATCGTTTGTCTACTAACGTTCAAGGAGTCCCTGTTGATGGGAGAAATCTGATTATAAAAGCACTTAACCTTTACAGGAAGAAAACTGGTAGTAACAGATTCTTCTGGATTCATTTAGATAAGAAGGTGCCTACCGGGGCTGGACTCGGTGGTGGAAGTAGTAATGCTGCAACTGCACTCTGGGCGGCAAATGAGCTCAATGGAGGTCTTGTCACTGAGAACGAACTCCAGGATTGGTCAAGTGAAATTGGGTCAGATATTCCTTTCTTCTTCTCGCATGGAGCTGCCTATTGTACCGGGAGAGGTGAGATTGTCCAAGACCTTCCTCCACCTTTTCCTCTTGATCTTCCGATGGTGCTCATAAAGCCCCGAGAAGCATGTTCCACTGCTGAAGTTTACAAACGTCTTCGTTTAGATCAGACGAGCAATATTAATCCCTTGACATTACTAGAGAATGTGACCAGCAATGGTGTGTCTCAAAGCATATGCGTAAACGATTTGGAACCGCCAGCGTTTTCAGTTCTTCCATCTCTAAAACGCTTGAAGCAACGGATAATAGCATCTGGACGTGGGGAATACGATGCTGTGTTTATGTCTGGGAGTGGAAGCACTATTATCGGTATTGGTTCACCAGATCCTCCTCAATTTATATATGATGATGAAGAATACAAGAACGTGTTCTTGTCTGAAGCAAACTTTATGACGCGTGAGGCTAATGAATGGTACAAAGAACCTGCTTCTGCAAATGCTACTACCTCATCCGCCGAATCTCGCATGGATTTCCAATGA

Protein Analysis

383

Amino Acids

42.04

Weight (kDa)

6.55

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GHMP_kinases_N PF00288 137 - 213 7e-14 GHMP kinases N terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 419
Acc36I ACCTGC 1 cut(s) 1105
AccB1I GGYRCC 1 cut(s) 490
AccI GTMKAC 1 cut(s) 374
AccII CGCG 1 cut(s) 1069
AciI CCGC 3 cut(s) 548, 869, 1125
AclI AACGTT 1 cut(s) 381
AclWI GGATC 3 cut(s) 149, 266, 992
AcsI RAATTY 1 cut(s) 335
AcuI CTGAAG 2 cut(s) 774, 1071
AfaI GTAC 2 cut(s) 658, 1088
AfiI CCNNNNNNNGG 1 cut(s) 401
AflII CTTAAG 2 cut(s) 106, 218
AflIII ACRYGT 2 cut(s) 1038, 1067
AgsI TTSAA 3 cut(s) 58, 386, 907
AjiI CACGTC 1 cut(s) 932
AjnI CCWGG 2 cut(s) 212, 591
AluBI AGCT 9 cut(s) 39, 91, 111, 125, 203, 223, 318, 559, 647
AluI AGCT 9 cut(s) 39, 91, 111, 125, 203, 223, 318, 559, 647
Alw21I GWGCWC 2 cut(s) 561, 723
Alw26I GTCTC 2 cut(s) 318, 843
AlwI GGATC 3 cut(s) 149, 266, 992
Ama87I CYCGRG 1 cut(s) 732
ApeKI GCWGC 2 cut(s) 530, 647
ApoI RAATTY 1 cut(s) 335
AseI ATTAAT 1 cut(s) 795
Asp700I GAANNNNTTC 1 cut(s) 1040
AsuC2I CCSGG 2 cut(s) 499, 661
AsuHPI GGTGA 6 cut(s) 194, 222, 253, 339, 680, 984
AvaI CYCGRG 1 cut(s) 732
BanI GGYRCC 1 cut(s) 490
BanII GRGCYC 1 cut(s) 561
BbsI GAAGAC 1 cut(s) 761
Bbv12I GWGCWC 2 cut(s) 561, 723
BbvI GCAGC 2 cut(s) 517, 634
BccI CCATC 5 cut(s) 272, 358, 395, 709, 898
BceAI ACGGC 1 cut(s) 24
BcgI CGANNNNNNTGC 2 cut(s) 961, 995
BciT130I CCWGG 2 cut(s) 214, 593
BcnI CCSGG 2 cut(s) 499, 661
BcoDI GTCTC 2 cut(s) 318, 843
BfaI CTAG 1 cut(s) 812
BfrI CTTAAG 2 cut(s) 106, 218
BfuAI ACCTGC 1 cut(s) 1105
BisI GCNGC 3 cut(s) 531, 549, 648
BlsI GCNGC 3 cut(s) 532, 550, 649
Bme1390I CCNGG 4 cut(s) 214, 499, 593, 661
BmeT110I CYCGRG 1 cut(s) 732
BmgBI CACGTC 1 cut(s) 932
BmiI GGNNCC 2 cut(s) 492, 867
BmrFI CCNGG 4 cut(s) 214, 499, 593, 661
BmsI GCATC 2 cut(s) 932, 934
BpiI GAAGAC 1 cut(s) 761
BpmI CTGGAG 1 cut(s) 575
Bpu10I CCTNAGC 1 cut(s) 319
BpuEI CTTGAG 1 cut(s) 274
BpuMI CCSGG 2 cut(s) 499, 661
BsaJI CCNNGG 1 cut(s) 498
BsaWI WCCGGW 1 cut(s) 263
BsaXI ACNNNNNCTCC 5 cut(s) 28, 381, 411, 558, 588
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse1I ACTGG 1 cut(s) 454
Bse3DI GCAATG 1 cut(s) 835
BseBI CCWGG 2 cut(s) 214, 593
BseDI CCNNGG 1 cut(s) 498
BseGI GGATG 1 cut(s) 1121
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMI GCAATG 1 cut(s) 835
BseMII CTCAG 2 cut(s) 49, 570
BseNI ACTGG 1 cut(s) 454
BseRI GAGGAG 2 cut(s) 6, 993
BseXI GCAGC 2 cut(s) 517, 634
BsgI GTGCAG 1 cut(s) 522
Bsh1236I CGCG 1 cut(s) 1069
BshNI GGYRCC 1 cut(s) 490
BsiHKAI GWGCWC 2 cut(s) 561, 723
BsiHKCI CYCGRG 1 cut(s) 732
BsiSI CCGG 3 cut(s) 264, 498, 660
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 2 cut(s) 318, 843
BsmFI GGGAC 1 cut(s) 377
BsoBI CYCGRG 1 cut(s) 732
Bsp1286I GDGCHC 2 cut(s) 561, 723
Bsp143I GATC 7 cut(s) 154, 240, 258, 364, 706, 778, 997
BspACI CCGC 3 cut(s) 548, 869, 1125
BspCNI CTCAG 2 cut(s) 48, 571
BspFNI CGCG 1 cut(s) 1069
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 492, 867
BspMI ACCTGC 1 cut(s) 1105
BspPI GGATC 3 cut(s) 149, 266, 992
BspQI GCTCTTC 1 cut(s) 230
BspT107I GGYRCC 1 cut(s) 490
BspTI CTTAAG 2 cut(s) 106, 218
BsrDI GCAATG 1 cut(s) 835
BsrI ACTGG 1 cut(s) 454
BssECI CCNNGG 1 cut(s) 498
BssMI GATC 7 cut(s) 154, 240, 258, 364, 706, 778, 997
Bst2UI CCWGG 2 cut(s) 214, 593
Bst6I CTCTTC 2 cut(s) 55, 230
BstAFI CTTAAG 2 cut(s) 106, 218
BstC8I GCNNGC 1 cut(s) 873
BstDEI CTNAG 3 cut(s) 35, 319, 579
BstF5I GGATG 1 cut(s) 1121
BstFNI CGCG 1 cut(s) 1069
BstKTI GATC 7 cut(s) 157, 243, 261, 367, 709, 781, 1000
BstMAI GTCTC 2 cut(s) 318, 843
BstMBI GATC 7 cut(s) 154, 240, 258, 364, 706, 778, 997
BstMWI GCNNNNNNNGC 3 cut(s) 536, 545, 727
BstNI CCWGG 2 cut(s) 214, 593
BstNSI RCATGY 1 cut(s) 744
BstSCI CCNGG 4 cut(s) 212, 497, 591, 659
BstUI CGCG 1 cut(s) 1069
BstV1I GCAGC 2 cut(s) 517, 634
BstV2I GAAGAC 1 cut(s) 761
BstX2I RGATCY 1 cut(s) 997
BstYI RGATCY 1 cut(s) 997
BtrI CACGTC 1 cut(s) 932
BtsCI GGATG 1 cut(s) 1121
BtsI GCAGTG 1 cut(s) 747
BtsIMutI CAGTG 2 cut(s) 576, 747
BveI ACCTGC 1 cut(s) 1105
Cac8I GCNNGC 1 cut(s) 873
CciI TCATGA 1 cut(s) 286
CseI GACGC 1 cut(s) 1075
Csp6I GTAC 2 cut(s) 657, 1087
CviAII CATG 5 cut(s) 287, 308, 641, 741, 1138
CviQI GTAC 2 cut(s) 657, 1087
DdeI CTNAG 3 cut(s) 35, 319, 579
DpnI GATC 7 cut(s) 156, 242, 260, 366, 708, 780, 999
DpnII GATC 7 cut(s) 154, 240, 258, 364, 706, 778, 997
Eam1104I CTCTTC 2 cut(s) 55, 230
EarI CTCTTC 2 cut(s) 55, 230
EciI GGCGGA 1 cut(s) 1114
Ecl136II GAGCTC 1 cut(s) 559
Eco24I GRGCYC 1 cut(s) 561
Eco53kI GAGCTC 1 cut(s) 559
Eco57I CTGAAG 2 cut(s) 774, 1071
Eco88I CYCGRG 1 cut(s) 732
EcoICRI GAGCTC 1 cut(s) 559
EcoRII CCWGG 2 cut(s) 212, 591
EcoT38I GRGCYC 1 cut(s) 561
FaeI CATG 5 cut(s) 290, 311, 644, 744, 1141
FaqI GGGAC 1 cut(s) 377
FatI CATG 5 cut(s) 286, 307, 640, 740, 1137
FauNDI CATATG 1 cut(s) 848
FblI GTMKAC 1 cut(s) 374
Fnu4HI GCNGC 3 cut(s) 531, 549, 648
FokI GGATG 1 cut(s) 1108
FriOI GRGCYC 1 cut(s) 561
Fsp4HI GCNGC 3 cut(s) 531, 549, 648
FspBI CTAG 1 cut(s) 812
GluI GCNGC 3 cut(s) 531, 549, 648
GsuI CTGGAG 1 cut(s) 575
HapII CCGG 3 cut(s) 264, 498, 660
HgaI GACGC 1 cut(s) 1075
Hin1II CATG 5 cut(s) 290, 311, 644, 744, 1141
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 3 cut(s) 89, 109, 123
HinfI GANTC 5 cut(s) 390, 462, 472, 507, 1130
HpaII CCGG 3 cut(s) 264, 498, 660
HphI GGTGA 6 cut(s) 194, 222, 253, 339, 680, 984
Hpy166II GTNNAC 5 cut(s) 193, 375, 760, 856, 992
Hpy188I TCNGA 6 cut(s) 87, 414, 619, 714, 783, 1051
Hpy188III TCNNGA 7 cut(s) 129, 158, 253, 287, 469, 704, 927
Hpy8I GTNNAC 5 cut(s) 193, 375, 760, 856, 992
HpyAV CCTTC 2 cut(s) 481, 695
HpyCH4IV ACGT 4 cut(s) 381, 766, 931, 1038
HpyCH4V TGCA 4 cut(s) 237, 533, 539, 1106
HpyF10VI GCNNNNNNNGC 3 cut(s) 536, 545, 727
HpyF3I CTNAG 3 cut(s) 35, 319, 579
HpySE526I ACGT 4 cut(s) 381, 766, 931, 1038
Hsp92II CATG 5 cut(s) 290, 311, 644, 744, 1141
Kzo9I GATC 7 cut(s) 154, 240, 258, 364, 706, 778, 997
LguI GCTCTTC 1 cut(s) 230
LmnI GCTCC 2 cut(s) 208, 644
Lsp1109I GCAGC 2 cut(s) 517, 634
LweI GCATC 2 cut(s) 932, 934
MaeI CTAG 1 cut(s) 812
MaeII ACGT 4 cut(s) 381, 766, 931, 1038
MaeIII GTNAC 4 cut(s) 345, 455, 574, 820
MalI GATC 7 cut(s) 156, 242, 260, 366, 708, 780, 999
MboI GATC 7 cut(s) 154, 240, 258, 364, 706, 778, 997
MflI RGATCY 1 cut(s) 997
MhlI GDGCHC 2 cut(s) 561, 723
MluCI AATT 3 cut(s) 335, 609, 1007
MluI ACGCGT 1 cut(s) 1067
MlyI GAGTC 2 cut(s) 399, 501
MroXI GAANNNNTTC 1 cut(s) 1040
MseI TTAA 6 cut(s) 107, 171, 219, 333, 429, 795
MspCI CTTAAG 2 cut(s) 106, 218
MspI CCGG 3 cut(s) 264, 498, 660
MspR9I CCNGG 4 cut(s) 214, 499, 593, 661
MvaI CCWGG 2 cut(s) 214, 593
MvnI CGCG 1 cut(s) 1069
MwoI GCNNNNNNNGC 3 cut(s) 536, 545, 727
NciI CCSGG 2 cut(s) 499, 661
NdeI CATATG 1 cut(s) 848
NdeII GATC 7 cut(s) 154, 240, 258, 364, 706, 778, 997
NlaIII CATG 5 cut(s) 290, 311, 644, 744, 1141
NlaIV GGNNCC 2 cut(s) 492, 867
NmuCI GTSAC 3 cut(s) 345, 574, 820
NspI RCATGY 1 cut(s) 744
PagI TCATGA 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 230
PdmI GAANNNNTTC 1 cut(s) 1040
PfeI GAWTC 3 cut(s) 462, 472, 1130
PfoI TCCNGGA 1 cut(s) 591
PkrI GCNGC 3 cut(s) 532, 550, 649
PleI GAGTC 2 cut(s) 398, 501
PpsI GAGTC 2 cut(s) 398, 501
PshBI ATTAAT 1 cut(s) 795
PsiI TTATAA 1 cut(s) 419
Psp124BI GAGCTC 1 cut(s) 561
Psp1406I AACGTT 1 cut(s) 381
Psp6I CCWGG 2 cut(s) 212, 591
PspGI CCWGG 2 cut(s) 212, 591
PspN4I GGNNCC 2 cut(s) 492, 867
PsuI RGATCY 1 cut(s) 997
RsaI GTAC 2 cut(s) 658, 1088
RsaNI GTAC 2 cut(s) 657, 1087
SacI GAGCTC 1 cut(s) 561
SapI GCTCTTC 1 cut(s) 230
SaqAI TTAA 6 cut(s) 107, 171, 219, 333, 429, 795
SatI GCNGC 3 cut(s) 531, 549, 648
Sau3AI GATC 7 cut(s) 154, 240, 258, 364, 706, 778, 997
SchI GAGTC 2 cut(s) 399, 501
ScrFI CCNGG 4 cut(s) 214, 499, 593, 661
SduI GDGCHC 2 cut(s) 561, 723
SfaNI GCATC 2 cut(s) 932, 934
SmlI CTYRAG 3 cut(s) 106, 218, 253
SmoI CTYRAG 3 cut(s) 106, 218, 253
Sse9I AATT 3 cut(s) 335, 609, 1007
SsiI CCGC 3 cut(s) 548, 869, 1125
SspI AATATT 1 cut(s) 793
SspMI CTAG 1 cut(s) 812
SstI GAGCTC 1 cut(s) 561
StyD4I CCNGG 4 cut(s) 212, 497, 591, 659
TaiI ACGT 4 cut(s) 384, 769, 934, 1041
TaqI TCGA 1 cut(s) 97
TasI AATT 3 cut(s) 335, 609, 1007
TauI GCSGC 1 cut(s) 551
TfiI GAWTC 3 cut(s) 462, 472, 1130
Tru1I TTAA 6 cut(s) 107, 171, 219, 333, 429, 795
Tru9I TTAA 6 cut(s) 107, 171, 219, 333, 429, 795
TscAI CASTG 2 cut(s) 583, 754
TseFI GTSAC 3 cut(s) 345, 574, 820
TseI GCWGC 2 cut(s) 530, 647
Tsp45I GTSAC 3 cut(s) 345, 574, 820
TspDTI ATGAA 6 cut(s) 66, 275, 296, 464, 1038, 1095
TspGWI ACGGA 2 cut(s) 106, 928
TspRI CASTG 2 cut(s) 583, 754
Vha464I CTTAAG 2 cut(s) 106, 218
VspI ATTAAT 1 cut(s) 795
XapI RAATTY 1 cut(s) 335
XceI RCATGY 1 cut(s) 744
XmiI GTMKAC 1 cut(s) 374
XmnI GAANNNNTTC 1 cut(s) 1040
XspI CTAG 1 cut(s) 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.