Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005876

Physical Location & Seq

Genomic Coordinates Reverse (-)

50976576 .. 50982845

Gene Structure 6270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G031260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGCTTTATCTCAGTTTCTGGGCCACAATCCAATCCTGCAGCCTTGTCCCAATTTGTTCGAAAACAACCGCAGAGTGCATTCGCTACGTTCACATGGGTCCTCCTCATATTTCAACTCAAAGTCGAGAAATGTCAGAGTCATGGTTTCTGCCAACAGAAAACAAGTAGAGATAGTATACGATCCTGATGAAAGGATAAACAAGTTGGCAGCTAAGGTGGAAAATGAGGCTCCGCCGCTTTCAAGGCTGTCACTGTTCTCGCCTTGCAAGATTAATGTTTTCTTGAGAATCACTAACAAAAGAGAAGATGGGTTTCATGACTTGGCATCTCTCTTTCATGTCATAAGCCTTGGAGATGTGATTAAGTTCTCTTTGTCACCCTCAAAATCCAAAGATCGTTTGTCCACCAATGTGTCAGGGGTTCCCCTTGATGATAGGAATTTGATTATCAAGGCCCTTAATCTCTACAGGAAGAAGACTGGTAGCGACAATTTCTTTTGGATTCATCTTGATAAGAAAGTGCCTACAGGAGCAGGACTTGGTGGTGGAAGCAGCAATGCTGCAACTGCGCTATGGGCAGCAAATCAGTTTAATGGTTGTCTTGCCACTGAGAAGGAGCTCCAAGAATGGTCGAGTGAGATTGGTTCAGATGTTCCCTTCTTTTTCTCTCAAGGTGCAGCCTATTGTACTGGTCGTGGTGAGGTTGTTCAAAATATTCCTCCACCTGTACCCTTTGACATTCCGATGGTTCTTATAAAGCCTCAGCAGGCATGTTCAACAGCTGAAGTTTACAAGCGCCTGCAGTTGGATACAACTAGTAGTGTTGATCCTTTAAAATTGCTGGAAAGAATCTCAGTGAATGGAATATCGCAAGATGTTTGCATCAATGATTTAGAACCTCCAGCATTTCAAGTTCTTCCATCTCTTAAAAGATTGAAGCAGCGAGTACTTGCTGCTAGCCGTGGACAATATGATGCTGTTTTCATGTCTGGAAGTGGAAGCACTATTGTTGGGATTGGTTCTCCAGATCCTCCTCAGTTTGTATATGATGACAACGAATACAAGGATGTGTTTTTGTCAGAGGCCAACTTTCTCACTCGCGAAGAAAATCATTGGTACAGAGAACCTTCATCCAGAAGTGCTGGTGGCCCATCCTCTGATTTTTCCCAGTCTATTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009509 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050515

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

393

Amino Acids

43.47

Weight (kDa)

8.13

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	147 - 224	3e-14	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26930
fragaria_vesca	FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650
malus_domestica	MD03G1163100.v1.1
prunus_persica	Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1
pyrus_communis	pycom5153684g00180
rosa_chinensis	RchiOBHm_Chr5g0050131
rosa_laevigata	RLG00000034688
rosa_multiflora	Rmu_sc0002289.1_g000014 Rmu_sc0002289.1_g000015
rosa_roxburghii	Rroxscaffold_1G00030810 Rroxscaffold_3G00235880 Rroxscaffold_3G00235890 Rroxscaffold_3G00235900
rosa_rugosa	Rorug05G0259000
rosa_samantha	Rh5AG330800 Rh5BG341500 Rh5CG368000 Rh5DG354300
rosa_wichuraiana	Rw5G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	755
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	1 cut(s)	1101
AciI	CCGC	3 cut(s)	70, 233, 236
AclWI	GGATC	3 cut(s)	176, 821, 1022
AcsI	RAATTY	1 cut(s)	439
AcuI	CTGAAG	1 cut(s)	804
AfaI	GTAC	4 cut(s)	688, 729, 948, 1118
AfiI	CCNNNNNNNGG	1 cut(s)	805
AgsI	TTSAA	6 cut(s)	115, 243, 710, 777, 911, 937
AhlI	ACTAGT	1 cut(s)	815
AleI	CACNNNNGTG	1 cut(s)	410
AluBI	AGCT	3 cut(s)	212, 619, 782
AluI	AGCT	3 cut(s)	212, 619, 782
Alw21I	GWGCWC	1 cut(s)	621
AlwI	GGATC	3 cut(s)	176, 821, 1022
AlwNI	CAGNNNCTG	1 cut(s)	19
AoxI	GGCC	4 cut(s)	22, 453, 1083, 1147
ApeKI	GCWGC	8 cut(s)	40, 209, 552, 560, 578, 677, 940, 953
ApoI	RAATTY	1 cut(s)	439
AseI	ATTAAT	1 cut(s)	273
AspLEI	GCGC	2 cut(s)	571, 798
AspS9I	GGNCC	4 cut(s)	22, 99, 454, 1148
AsuHPI	GGTGA	2 cut(s)	369, 710
AsuII	TTCGAA	1 cut(s)	60
AsuNHI	GCTAGC	1 cut(s)	956
AvaII	GGWCC	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	621
BbsI	GAAGAC	1 cut(s)	482
Bbv12I	GWGCWC	1 cut(s)	621
BbvCI	CCTCAGC	1 cut(s)	762
BbvI	GCAGC	8 cut(s)	52, 221, 547, 564, 590, 689, 940, 952
BccI	CCATC	4 cut(s)	302, 739, 928, 1159
BceAI	ACGGC	1 cut(s)	945
BciVI	GTATCC	1 cut(s)	802
BcuI	ACTAGT	1 cut(s)	815
BfaI	CTAG	2 cut(s)	816, 957
BfmI	CTRYAG	4 cut(s)	38, 466, 525, 800
BfoI	RGCGCY	1 cut(s)	799
BfuI	GTATCC	1 cut(s)	802
BisI	GCNGC	9 cut(s)	41, 210, 236, 553, 561, 579, 678, 941, 954
BlsI	GCNGC	9 cut(s)	42, 211, 237, 554, 562, 580, 679, 942, 955
BmcAI	AGTACT	1 cut(s)	948
Bme18I	GGWCC	1 cut(s)	99
BmgT120I	GGNCC	4 cut(s)	22, 99, 454, 1148
BmiI	GGNNCC	3 cut(s)	100, 231, 423
BmrI	ACTGGG	1 cut(s)	1162
BmsI	GCATC	3 cut(s)	335, 891, 964
BmtI	GCTAGC	1 cut(s)	960
BmuI	ACTGGG	1 cut(s)	1162
BpiI	GAAGAC	1 cut(s)	482
BpmI	CTGGAG	2 cut(s)	885, 1008
Bpu10I	CCTNAGC	2 cut(s)	213, 762
Bpu14I	TTCGAA	1 cut(s)	60
BpuEI	CTTGAG	2 cut(s)	304, 654
BsaJI	CCNNGG	2 cut(s)	349, 961
Bsc4I	CCNNNNNNNGG	1 cut(s)	805
Bse1I	ACTGG	3 cut(s)	484, 694, 1168
Bse3DI	GCAATG	1 cut(s)	562
BseDI	CCNNGG	2 cut(s)	349, 961
BseGI	GGATG	3 cut(s)	1072, 1130, 1151
BseLI	CCNNNNNNNGG	1 cut(s)	805
BseMI	GCAATG	1 cut(s)	562
BseMII	CTCAG	5 cut(s)	26, 600, 776, 867, 1049
BseNI	ACTGG	3 cut(s)	484, 694, 1168
BseRI	GAGGAG	2 cut(s)	94, 1023
BseXI	GCAGC	8 cut(s)	52, 221, 547, 564, 590, 689, 940, 952
BsgI	GTGCAG	1 cut(s)	696
Bsh1236I	CGCG	1 cut(s)	1101
BshFI	GGCC	4 cut(s)	24, 455, 1085, 1149
BsiHKAI	GWGCWC	1 cut(s)	621
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	805
BsmFI	GGGAC	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	79
BsnI	GGCC	4 cut(s)	24, 455, 1085, 1149
Bsp119I	TTCGAA	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp143I	GATC	4 cut(s)	181, 394, 826, 1027
Bsp68I	TCGCGA	1 cut(s)	1101
BspACI	CCGC	3 cut(s)	70, 233, 236
BspANI	GGCC	4 cut(s)	24, 455, 1085, 1149
BspCNI	CTCAG	5 cut(s)	25, 601, 775, 866, 1048
BspFNI	CGCG	1 cut(s)	1101
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	3 cut(s)	100, 231, 423
BspMAI	CTGCAG	2 cut(s)	42, 804
BspOI	GCTAGC	1 cut(s)	960
BspPI	GGATC	3 cut(s)	176, 821, 1022
BspT104I	TTCGAA	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	562
BsrI	ACTGG	3 cut(s)	484, 694, 1168
BssECI	CCNNGG	2 cut(s)	349, 961
BssMI	GATC	4 cut(s)	181, 394, 826, 1027
BssNAI	GTATAC	1 cut(s)	178
BssT1I	CCWWGG	1 cut(s)	349
Bst1107I	GTATAC	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	255
BstBI	TTCGAA	1 cut(s)	60
BstC8I	GCNNGC	3 cut(s)	768, 800, 958
BstDEI	CTNAG	6 cut(s)	12, 213, 609, 762, 853, 1035
BstDSI	CCRYGG	1 cut(s)	961
BstF5I	GGATG	3 cut(s)	1072, 1130, 1151
BstFNI	CGCG	1 cut(s)	1101
BstH2I	RGCGCY	1 cut(s)	799
BstHHI	GCGC	2 cut(s)	571, 798
BstKTI	GATC	4 cut(s)	184, 397, 829, 1030
BstMBI	GATC	4 cut(s)	181, 394, 826, 1027
BstMWI	GCNNNNNNNGC	3 cut(s)	244, 566, 575
BstNSI	RCATGY	1 cut(s)	774
BstSFI	CTRYAG	4 cut(s)	38, 466, 525, 800
BstUI	CGCG	1 cut(s)	1101
BstV1I	GCAGC	8 cut(s)	52, 221, 547, 564, 590, 689, 940, 952
BstV2I	GAAGAC	1 cut(s)	482
BstX2I	RGATCY	1 cut(s)	1027
BstYI	RGATCY	1 cut(s)	1027
BstZ17I	GTATAC	1 cut(s)	178
BsuI	GTATCC	1 cut(s)	802
BsuRI	GGCC	4 cut(s)	24, 455, 1085, 1149
BtgI	CCRYGG	1 cut(s)	961
BtsCI	GGATG	3 cut(s)	1072, 1130, 1151
BtsIMutI	CAGTG	3 cut(s)	251, 606, 861
BtuMI	TCGCGA	1 cut(s)	1101
Cac8I	GCNNGC	3 cut(s)	768, 800, 958
CaiI	CAGNNNCTG	1 cut(s)	19
CciI	TCATGA	1 cut(s)	316
CfoI	GCGC	2 cut(s)	571, 798
Cfr13I	GGNCC	4 cut(s)	22, 99, 454, 1148
Csp6I	GTAC	4 cut(s)	687, 728, 947, 1117
CviAII	CATG	6 cut(s)	95, 142, 317, 338, 771, 985
CviQI	GTAC	4 cut(s)	687, 728, 947, 1117
DdeI	CTNAG	6 cut(s)	12, 213, 609, 762, 853, 1035
DpnI	GATC	4 cut(s)	183, 396, 828, 1029
DpnII	GATC	4 cut(s)	181, 394, 826, 1027
DraI	TTTAAA	1 cut(s)	834
EciI	GGCGGA	1 cut(s)	222
Ecl136II	GAGCTC	1 cut(s)	619
Eco130I	CCWWGG	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	621
Eco47I	GGWCC	1 cut(s)	99
Eco53kI	GAGCTC	1 cut(s)	619
Eco57I	CTGAAG	1 cut(s)	804
EcoICRI	GAGCTC	1 cut(s)	619
EcoO109I	RGGNCCY	2 cut(s)	99, 454
EcoT14I	CCWWGG	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	621
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	6 cut(s)	98, 145, 320, 341, 774, 988
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	6 cut(s)	94, 141, 316, 337, 770, 984
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	9 cut(s)	41, 210, 236, 553, 561, 579, 678, 941, 954
FokI	GGATG	3 cut(s)	1079, 1117, 1138
FriOI	GRGCYC	1 cut(s)	621
Fsp4HI	GCNGC	9 cut(s)	41, 210, 236, 553, 561, 579, 678, 941, 954
FspBI	CTAG	2 cut(s)	816, 957
GlaI	GCGC	2 cut(s)	570, 797
GluI	GCNGC	9 cut(s)	41, 210, 236, 553, 561, 579, 678, 941, 954
GsuI	CTGGAG	2 cut(s)	885, 1008
HaeII	RGCGCY	1 cut(s)	799
HaeIII	GGCC	4 cut(s)	24, 455, 1085, 1149
HhaI	GCGC	2 cut(s)	571, 798
Hin1II	CATG	6 cut(s)	98, 145, 320, 341, 774, 988
Hin6I	GCGC	2 cut(s)	569, 796
HinP1I	GCGC	2 cut(s)	569, 796
HinfI	GANTC	4 cut(s)	138, 288, 502, 849
HphI	GGTGA	2 cut(s)	369, 710
Hpy166II	GTNNAC	5 cut(s)	92, 178, 405, 790, 965
Hpy188I	TCNGA	5 cut(s)	137, 649, 744, 1081, 1159
Hpy188III	TCNNGA	9 cut(s)	126, 185, 283, 317, 509, 990, 1025, 1100, 1134
Hpy8I	GTNNAC	5 cut(s)	92, 178, 405, 790, 965
HpyAV	CCTTC	3 cut(s)	607, 667, 1137
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	7 cut(s)	40, 79, 267, 563, 677, 802, 882
HpyF10VI	GCNNNNNNNGC	3 cut(s)	244, 566, 575
HpyF3I	CTNAG	6 cut(s)	12, 213, 609, 762, 853, 1035
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	6 cut(s)	98, 145, 320, 341, 774, 988
HspAI	GCGC	2 cut(s)	569, 796
Kzo9I	GATC	4 cut(s)	181, 394, 826, 1027
LmnI	GCTCC	4 cut(s)	235, 530, 616, 624
Lsp1109I	GCAGC	8 cut(s)	52, 221, 547, 564, 590, 689, 940, 952
LweI	GCATC	3 cut(s)	335, 891, 964
MaeI	CTAG	2 cut(s)	816, 957
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	2 cut(s)	249, 375
MalI	GATC	4 cut(s)	183, 396, 828, 1029
MboI	GATC	4 cut(s)	181, 394, 826, 1027
MboII	GAAGA	5 cut(s)	317, 484, 487, 908, 1115
MflI	RGATCY	1 cut(s)	1027
MhlI	GDGCHC	1 cut(s)	621
MluCI	AATT	4 cut(s)	52, 439, 490, 836
MlyI	GAGTC	1 cut(s)	147
MmeI	TCCRAC	1 cut(s)	786
MseI	TTAA	6 cut(s)	273, 363, 459, 591, 833, 927
MslI	CAYNNNNRTG	2 cut(s)	410, 743
MspA1I	CMGCKG	1 cut(s)	782
Mva1269I	GAATGC	1 cut(s)	79
MvnI	CGCG	1 cut(s)	1101
MwoI	GCNNNNNNNGC	3 cut(s)	244, 566, 575
NdeII	GATC	4 cut(s)	181, 394, 826, 1027
NheI	GCTAGC	1 cut(s)	956
NlaIII	CATG	6 cut(s)	98, 145, 320, 341, 774, 988
NlaIV	GGNNCC	3 cut(s)	100, 231, 423
NmuCI	GTSAC	2 cut(s)	249, 375
NruI	TCGCGA	1 cut(s)	1101
NspI	RCATGY	1 cut(s)	774
NspV	TTCGAA	1 cut(s)	60
OliI	CACNNNNGTG	1 cut(s)	410
PagI	TCATGA	1 cut(s)	316
PctI	GAATGC	1 cut(s)	79
PfeI	GAWTC	3 cut(s)	288, 502, 849
PkrI	GCNGC	9 cut(s)	42, 211, 237, 554, 562, 580, 679, 942, 955
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PpuMI	RGGWCCY	1 cut(s)	99
PshBI	ATTAAT	1 cut(s)	273
PsiI	TTATAA	1 cut(s)	755
Psp124BI	GAGCTC	1 cut(s)	621
Psp5II	RGGWCCY	1 cut(s)	99
PspN4I	GGNNCC	3 cut(s)	100, 231, 423
PspPI	GGNCC	4 cut(s)	22, 99, 454, 1148
PspPPI	RGGWCCY	1 cut(s)	99
PstI	CTGCAG	2 cut(s)	42, 804
PstNI	CAGNNNCTG	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	1027
PvuII	CAGCTG	1 cut(s)	782
RruI	TCGCGA	1 cut(s)	1101
RsaI	GTAC	4 cut(s)	688, 729, 948, 1118
RsaNI	GTAC	4 cut(s)	687, 728, 947, 1117
RseI	CAYNNNNRTG	2 cut(s)	410, 743
SacI	GAGCTC	1 cut(s)	621
SaqAI	TTAA	6 cut(s)	273, 363, 459, 591, 833, 927
SatI	GCNGC	9 cut(s)	41, 210, 236, 553, 561, 579, 678, 941, 954
Sau3AI	GATC	4 cut(s)	181, 394, 826, 1027
Sau96I	GGNCC	4 cut(s)	22, 99, 454, 1148
ScaI	AGTACT	1 cut(s)	948
SchI	GAGTC	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	621
SfaNI	GCATC	3 cut(s)	335, 891, 964
SfcI	CTRYAG	4 cut(s)	38, 466, 525, 800
SfuI	TTCGAA	1 cut(s)	60
SinI	GGWCC	1 cut(s)	99
SmiMI	CAYNNNNRTG	2 cut(s)	410, 743
SmlI	CTYRAG	2 cut(s)	283, 669
SmoI	CTYRAG	2 cut(s)	283, 669
SpeI	ACTAGT	1 cut(s)	815
Sse9I	AATT	4 cut(s)	52, 439, 490, 836
SsiI	CCGC	3 cut(s)	70, 233, 236
SspI	AATATT	1 cut(s)	715
SspMI	CTAG	2 cut(s)	816, 957
SstI	GAGCTC	1 cut(s)	621
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	1 cut(s)	255
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	3 cut(s)	60, 125, 632
TasI	AATT	4 cut(s)	52, 439, 490, 836
TatI	WGTACW	2 cut(s)	686, 946
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	3 cut(s)	288, 502, 849
Tru1I	TTAA	6 cut(s)	273, 363, 459, 591, 833, 927
Tru9I	TTAA	6 cut(s)	273, 363, 459, 591, 833, 927
TscAI	CASTG	3 cut(s)	258, 613, 861
TseFI	GTSAC	2 cut(s)	249, 375
TseI	GCWGC	8 cut(s)	40, 209, 552, 560, 578, 677, 940, 953
Tsp45I	GTSAC	2 cut(s)	249, 375
TspDTI	ATGAA	6 cut(s)	204, 305, 326, 494, 973, 1119
TspRI	CASTG	3 cut(s)	258, 613, 861
VpaK11BI	GGWCC	1 cut(s)	99
VspI	ATTAAT	1 cut(s)	273
XapI	RAATTY	1 cut(s)	439
XceI	RCATGY	1 cut(s)	774
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	2 cut(s)	816, 957
ZrmI	AGTACT	1 cut(s)	948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.