Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005876

Physical Location & Seq

Genomic Coordinates Reverse (-)

48476337 .. 48482830

Gene Structure 6494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG341500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGCTGGCTGCACTGGGGGTTCCTATGGCTTTATCTCAGTTTCTCGGCCATAATCCAATCTTGCAGCCTTGTCCCAATTTGTTCGAAAACCGCAGAGTGCATTCGCTACGTACACATGGGTCGTCCTCATATTTCAACTCAAAGTCGAGAAATGTCAGCGTCATGGTTTCTGCCAACAGAAAACAAGTAGAGATAGTATACGATCCTGATGAAAGGATAAACAAGTTGGCAGATAAGGTGGAAAATGAGGCTCCGCCGCTTTCAAGGCTGTCACTGTTCTCGCCTTGCAAGATTAATGTTTTCTTGAGAATAACTAACAAAAGAGAAGATGGGTTTCATGACTTGGCATCTCTCTTTCATGTCATAAGCCTTGGAGATGTGATTAAGTTCTCTTTGTCACCCTCAAAATCCAAAGATCGTTTGTCGACCAATGTGTCAGGGGTTCCCCTTGATGATAGGAATTTGATTATCAAGGCCCTTAATCTCTACAGGAAGAAGACTGGTAGCGACAATTTCTTTTGGATTCATCTTGATAAGAAAGTGCCTACAGGAGCAGGACTTGGTGGTGGAAGCAGCAATGCTGCAACTGCGCTATGGGCAGCAAATCAGTTTAATGGTTGTCTTGCCACTGAGAAGGAGCTCCAAGAATGGTCGAGTGAGATTGGTTCAGATGTTCCCTTCTTTTTCTCTCAAGGTGCAGCCTATTGTACTGGTCGTGGTGAGGTTGTTCAAAATATTCCTCCACCTGTACCCTTTGACATTCCGATGGTTCTTATAAAGCCTCAGCAGGCATGTTCAACAGCTGAAGTTTACAAGCGCCTGCAGTTGGATACAACTAGTAGTGTTGATCCTTTAAAATTGCTGGAAAGAATCTCAGTGAATGGAATATCACAAGATGTTTGCATCAATGATTTAGAACCTCCAGCATTTCAAGTTCTTCCATCTCTTAAAAGATTGAAGCAGCGAGTACTTGCTGCTAGCCGTGGACAATATGATGCTGTTTTCATGTCTGGAAGTGGAAGCACTATTGTTGGGATTGGTTCTCCAGATCCTCCTCAGTTTGTATATGATGACAACGAATACAAGGATGTGTTTTTGTCAGGTCAGTTGTCAGCCCAATTTAACTATATCTATTCACTTTCAGAGTGCATCATCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009509 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050515

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

386

Amino Acids

42.52

Weight (kDa)

7.58

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	154 - 231	3e-14	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26930
fragaria_vesca	FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650
malus_domestica	MD03G1163100.v1.1
prunus_persica	Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1
pyrus_communis	pycom5153684g00180
rosa_chinensis	RchiOBHm_Chr5g0050131
rosa_laevigata	RLG00000034688
rosa_multiflora	Rmu_sc0002289.1_g000014 Rmu_sc0002289.1_g000015
rosa_roxburghii	Rroxscaffold_1G00030810 Rroxscaffold_3G00235880 Rroxscaffold_3G00235890 Rroxscaffold_3G00235900
rosa_rugosa	Rorug05G0259000
rosa_samantha	Rh5AG330800 Rh5BG341500 Rh5CG368000 Rh5DG354300
rosa_wichuraiana	Rw5G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	776
AasI	GACNNNNNNGTC	1 cut(s)	433
AccI	GTMKAC	2 cut(s)	198, 425
AciI	CCGC	3 cut(s)	91, 254, 257
AclWI	GGATC	3 cut(s)	197, 842, 1043
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	460
AcuI	CTGAAG	1 cut(s)	825
AfaI	GTAC	4 cut(s)	112, 709, 750, 969
AfiI	CCNNNNNNNGG	1 cut(s)	826
AgsI	TTSAA	6 cut(s)	136, 264, 731, 798, 932, 958
AhlI	ACTAGT	1 cut(s)	836
AluBI	AGCT	2 cut(s)	640, 803
AluI	AGCT	2 cut(s)	640, 803
Alw21I	GWGCWC	1 cut(s)	642
AlwI	GGATC	3 cut(s)	197, 842, 1043
AoxI	GGCC	2 cut(s)	46, 474
ApeKI	GCWGC	8 cut(s)	8, 64, 573, 581, 599, 698, 961, 974
ApoI	RAATTY	1 cut(s)	460
AseI	ATTAAT	1 cut(s)	294
AspLEI	GCGC	2 cut(s)	592, 819
AspS9I	GGNCC	1 cut(s)	475
AsuHPI	GGTGA	2 cut(s)	390, 731
AsuII	TTCGAA	1 cut(s)	84
AsuNHI	GCTAGC	1 cut(s)	977
BanII	GRGCYC	1 cut(s)	642
BbsI	GAAGAC	1 cut(s)	503
Bbv12I	GWGCWC	1 cut(s)	642
BbvCI	CCTCAGC	1 cut(s)	783
BbvI	GCAGC	7 cut(s)	76, 568, 585, 611, 710, 961, 973
BccI	CCATC	3 cut(s)	323, 760, 949
BceAI	ACGGC	1 cut(s)	966
BciVI	GTATCC	1 cut(s)	823
BcuI	ACTAGT	1 cut(s)	836
BfaI	CTAG	2 cut(s)	837, 978
BfmI	CTRYAG	3 cut(s)	487, 546, 821
BfoI	RGCGCY	1 cut(s)	820
BfuI	GTATCC	1 cut(s)	823
BisI	GCNGC	9 cut(s)	9, 65, 257, 574, 582, 600, 699, 962, 975
BlsI	GCNGC	9 cut(s)	10, 66, 258, 575, 583, 601, 700, 963, 976
BmcAI	AGTACT	1 cut(s)	969
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	3 cut(s)	21, 252, 444
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	3 cut(s)	356, 912, 985
BmtI	GCTAGC	1 cut(s)	981
BmuI	ACTGGG	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	503
BpmI	CTGGAG	2 cut(s)	906, 1029
Bpu10I	CCTNAGC	1 cut(s)	783
Bpu14I	TTCGAA	1 cut(s)	84
BpuEI	CTTGAG	2 cut(s)	325, 675
BsaAI	YACGTR	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	370, 982
Bsc4I	CCNNNNNNNGG	1 cut(s)	826
Bse1I	ACTGG	3 cut(s)	18, 505, 715
Bse3DI	GCAATG	1 cut(s)	583
BseDI	CCNNGG	2 cut(s)	370, 982
BseGI	GGATG	1 cut(s)	1093
BseLI	CCNNNNNNNGG	1 cut(s)	826
BseMI	GCAATG	1 cut(s)	583
BseMII	CTCAG	5 cut(s)	50, 621, 797, 888, 1070
BseNI	ACTGG	3 cut(s)	18, 505, 715
BseRI	GAGGAG	1 cut(s)	1044
BseXI	GCAGC	7 cut(s)	76, 568, 585, 611, 710, 961, 973
BsgI	GTGCAG	1 cut(s)	717
BshFI	GGCC	2 cut(s)	48, 476
BsiHKAI	GWGCWC	1 cut(s)	642
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	826
BsmFI	GGGAC	1 cut(s)	57
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	2 cut(s)	48, 476
Bsp119I	TTCGAA	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	642
Bsp143I	GATC	4 cut(s)	202, 415, 847, 1048
BspACI	CCGC	3 cut(s)	91, 254, 257
BspANI	GGCC	2 cut(s)	48, 476
BspCNI	CTCAG	5 cut(s)	49, 622, 796, 887, 1069
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	3 cut(s)	21, 252, 444
BspMAI	CTGCAG	1 cut(s)	825
BspOI	GCTAGC	1 cut(s)	981
BspPI	GGATC	3 cut(s)	197, 842, 1043
BspT104I	TTCGAA	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	583
BsrI	ACTGG	3 cut(s)	18, 505, 715
BssECI	CCNNGG	2 cut(s)	370, 982
BssMI	GATC	4 cut(s)	202, 415, 847, 1048
BssNAI	GTATAC	1 cut(s)	199
BssT1I	CCWWGG	1 cut(s)	370
Bst1107I	GTATAC	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	276
BstBAI	YACGTR	1 cut(s)	110
BstBI	TTCGAA	1 cut(s)	84
BstC8I	GCNNGC	4 cut(s)	6, 789, 821, 979
BstDEI	CTNAG	5 cut(s)	36, 630, 783, 874, 1056
BstDSI	CCRYGG	1 cut(s)	982
BstF5I	GGATG	1 cut(s)	1093
BstH2I	RGCGCY	1 cut(s)	820
BstHHI	GCGC	2 cut(s)	592, 819
BstKTI	GATC	4 cut(s)	205, 418, 850, 1051
BstMBI	GATC	4 cut(s)	202, 415, 847, 1048
BstMWI	GCNNNNNNNGC	3 cut(s)	265, 587, 596
BstNSI	RCATGY	1 cut(s)	795
BstSFI	CTRYAG	3 cut(s)	487, 546, 821
BstSNI	TACGTA	1 cut(s)	110
BstV1I	GCAGC	7 cut(s)	76, 568, 585, 611, 710, 961, 973
BstV2I	GAAGAC	1 cut(s)	503
BstX2I	RGATCY	1 cut(s)	1048
BstYI	RGATCY	1 cut(s)	1048
BstZ17I	GTATAC	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	823
BsuRI	GGCC	2 cut(s)	48, 476
BtgI	CCRYGG	1 cut(s)	982
BtsCI	GGATG	1 cut(s)	1093
BtsIMutI	CAGTG	4 cut(s)	11, 272, 627, 882
Cac8I	GCNNGC	4 cut(s)	6, 789, 821, 979
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	2 cut(s)	592, 819
Cfr13I	GGNCC	1 cut(s)	475
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	4 cut(s)	111, 708, 749, 968
CviAII	CATG	6 cut(s)	116, 163, 338, 359, 792, 1006
CviQI	GTAC	4 cut(s)	111, 708, 749, 968
DdeI	CTNAG	5 cut(s)	36, 630, 783, 874, 1056
DpnI	GATC	4 cut(s)	204, 417, 849, 1050
DpnII	GATC	4 cut(s)	202, 415, 847, 1048
DraI	TTTAAA	1 cut(s)	855
DrdI	GACNNNNNNGTC	1 cut(s)	433
DseDI	GACNNNNNNGTC	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	46
EciI	GGCGGA	1 cut(s)	243
Ecl136II	GAGCTC	1 cut(s)	640
Eco105I	TACGTA	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	642
Eco53kI	GAGCTC	1 cut(s)	640
Eco57I	CTGAAG	1 cut(s)	825
EcoICRI	GAGCTC	1 cut(s)	640
EcoO109I	RGGNCCY	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	642
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	6 cut(s)	119, 166, 341, 362, 795, 1009
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	6 cut(s)	115, 162, 337, 358, 791, 1005
FblI	GTMKAC	2 cut(s)	198, 425
Fnu4HI	GCNGC	9 cut(s)	9, 65, 257, 574, 582, 600, 699, 962, 975
FokI	GGATG	1 cut(s)	1100
FriOI	GRGCYC	1 cut(s)	642
Fsp4HI	GCNGC	9 cut(s)	9, 65, 257, 574, 582, 600, 699, 962, 975
FspBI	CTAG	2 cut(s)	837, 978
GlaI	GCGC	2 cut(s)	591, 818
GluI	GCNGC	9 cut(s)	9, 65, 257, 574, 582, 600, 699, 962, 975
GsuI	CTGGAG	2 cut(s)	906, 1029
HaeII	RGCGCY	1 cut(s)	820
HaeIII	GGCC	2 cut(s)	48, 476
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	2 cut(s)	592, 819
Hin1II	CATG	6 cut(s)	119, 166, 341, 362, 795, 1009
Hin6I	GCGC	2 cut(s)	590, 817
HinP1I	GCGC	2 cut(s)	590, 817
HincII	GTYRAC	1 cut(s)	426
HindII	GTYRAC	1 cut(s)	426
HinfI	GANTC	2 cut(s)	523, 870
HphI	GGTGA	2 cut(s)	390, 731
Hpy166II	GTNNAC	5 cut(s)	113, 199, 426, 811, 986
Hpy188I	TCNGA	3 cut(s)	670, 765, 1144
Hpy188III	TCNNGA	7 cut(s)	147, 206, 304, 338, 530, 1011, 1046
Hpy8I	GTNNAC	5 cut(s)	113, 199, 426, 811, 986
HpyAV	CCTTC	2 cut(s)	628, 688
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	9 cut(s)	11, 64, 100, 288, 584, 698, 823, 903, 1149
HpyF10VI	GCNNNNNNNGC	3 cut(s)	265, 587, 596
HpyF3I	CTNAG	5 cut(s)	36, 630, 783, 874, 1056
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	6 cut(s)	119, 166, 341, 362, 795, 1009
HspAI	GCGC	2 cut(s)	590, 817
Kzo9I	GATC	4 cut(s)	202, 415, 847, 1048
LmnI	GCTCC	4 cut(s)	256, 551, 637, 645
Lsp1109I	GCAGC	7 cut(s)	76, 568, 585, 611, 710, 961, 973
LweI	GCATC	3 cut(s)	356, 912, 985
MaeI	CTAG	2 cut(s)	837, 978
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	2 cut(s)	270, 396
MalI	GATC	4 cut(s)	204, 417, 849, 1050
MboI	GATC	4 cut(s)	202, 415, 847, 1048
MboII	GAAGA	4 cut(s)	338, 505, 508, 929
MflI	RGATCY	1 cut(s)	1048
MhlI	GDGCHC	1 cut(s)	642
MluCI	AATT	6 cut(s)	76, 460, 511, 857, 1118, 1156
MmeI	TCCRAC	1 cut(s)	807
MnlI	CCTC	9 cut(s)	136, 241, 412, 715, 750, 792, 930, 1062, 1065
MseI	TTAA	8 cut(s)	294, 384, 480, 612, 854, 948, 1122, 1159
MslI	CAYNNNNRTG	1 cut(s)	764
MspA1I	CMGCKG	1 cut(s)	803
Mva1269I	GAATGC	1 cut(s)	100
MwoI	GCNNNNNNNGC	3 cut(s)	265, 587, 596
NdeII	GATC	4 cut(s)	202, 415, 847, 1048
NheI	GCTAGC	1 cut(s)	977
NlaIII	CATG	6 cut(s)	119, 166, 341, 362, 795, 1009
NlaIV	GGNNCC	3 cut(s)	21, 252, 444
NmeAIII	GCCGAG	1 cut(s)	24
NmuCI	GTSAC	2 cut(s)	270, 396
NspI	RCATGY	1 cut(s)	795
NspV	TTCGAA	1 cut(s)	84
PagI	TCATGA	1 cut(s)	337
PctI	GAATGC	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	523, 870
PkrI	GCNGC	9 cut(s)	10, 66, 258, 575, 583, 601, 700, 963, 976
Ppu21I	YACGTR	1 cut(s)	110
PshBI	ATTAAT	1 cut(s)	294
PsiI	TTATAA	1 cut(s)	776
Psp124BI	GAGCTC	1 cut(s)	642
PspN4I	GGNNCC	3 cut(s)	21, 252, 444
PspPI	GGNCC	1 cut(s)	475
PstI	CTGCAG	1 cut(s)	825
PsuI	RGATCY	1 cut(s)	1048
PvuII	CAGCTG	1 cut(s)	803
RsaI	GTAC	4 cut(s)	112, 709, 750, 969
RsaNI	GTAC	4 cut(s)	111, 708, 749, 968
RseI	CAYNNNNRTG	1 cut(s)	764
SacI	GAGCTC	1 cut(s)	642
SalI	GTCGAC	1 cut(s)	424
SaqAI	TTAA	8 cut(s)	294, 384, 480, 612, 854, 948, 1122, 1159
SatI	GCNGC	9 cut(s)	9, 65, 257, 574, 582, 600, 699, 962, 975
Sau3AI	GATC	4 cut(s)	202, 415, 847, 1048
Sau96I	GGNCC	1 cut(s)	475
ScaI	AGTACT	1 cut(s)	969
SduI	GDGCHC	1 cut(s)	642
SetI	ASST	9 cut(s)	112, 240, 642, 697, 726, 748, 805, 922, 1105
SfaNI	GCATC	3 cut(s)	356, 912, 985
SfcI	CTRYAG	3 cut(s)	487, 546, 821
SfuI	TTCGAA	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	764
SmlI	CTYRAG	2 cut(s)	304, 690
SmoI	CTYRAG	2 cut(s)	304, 690
SnaBI	TACGTA	1 cut(s)	110
SpeI	ACTAGT	1 cut(s)	836
Sse9I	AATT	6 cut(s)	76, 460, 511, 857, 1118, 1156
SsiI	CCGC	3 cut(s)	91, 254, 257
SspI	AATATT	1 cut(s)	736
SspMI	CTAG	2 cut(s)	837, 978
SstI	GAGCTC	1 cut(s)	642
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	276
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	4 cut(s)	84, 146, 425, 653
TasI	AATT	6 cut(s)	76, 460, 511, 857, 1118, 1156
TatI	WGTACW	2 cut(s)	707, 967
TauI	GCSGC	1 cut(s)	259
TfiI	GAWTC	2 cut(s)	523, 870
Tru1I	TTAA	8 cut(s)	294, 384, 480, 612, 854, 948, 1122, 1159
Tru9I	TTAA	8 cut(s)	294, 384, 480, 612, 854, 948, 1122, 1159
TscAI	CASTG	4 cut(s)	18, 279, 634, 882
TseFI	GTSAC	2 cut(s)	270, 396
TseI	GCWGC	8 cut(s)	8, 64, 573, 581, 599, 698, 961, 974
Tsp45I	GTSAC	2 cut(s)	270, 396
TspDTI	ATGAA	5 cut(s)	225, 326, 347, 515, 994
TspRI	CASTG	4 cut(s)	18, 279, 634, 882
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	1 cut(s)	460
XceI	RCATGY	1 cut(s)	795
XmiI	GTMKAC	2 cut(s)	198, 425
XspI	CTAG	2 cut(s)	837, 978
ZrmI	AGTACT	1 cut(s)	969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.