Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005876

Physical Location & Seq

Genomic Coordinates Reverse (-)

50967787 .. 50974525

Gene Structure 6739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG330800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCTGGCTGCACTGGGGGCATACTATCCTATGGCTTTATCTCAGTTTCTCGGCCATAATCCAATCTTGCAGCCTTGTCCCAATTTGTTCGAAAACCGCAGAGTGCATTCGCTACGTTCACATGGGTCCTCATATTTCAACTCAAAGTCGAGAAATGTCAGAGTCATGGTTTCTGCCAACAGAAAACAAGTAGAGATAGTATACGATCCTGATGAAAGGATAAACAAGTTGGCAGATAAGGTGGAAAATGAGGCTCCGCCGCTTTCAAGGCTGTCACTGTTCTCGCCTTGCAAGATTAATGTTTTCTTGAGAATAACTAACAAAAGAGAAGATGGGTTTCATGACTTGGCATCTCTCTTTCATGTCATAAGCCTTGGAGATGTGATTAAGTTCTCTTTGTCACCCTCAAAATCCAAAGATCGTTTGTCGACCAATGTGTCAGGGGTTCCCCTTGATGATAGGAATTTGATTATCAAGGCCCTTAATCTCTACAGGAAGAAGACTGGTAGCGACAATTTCTTTTGGATTCATCTTGATAAGAAAGTGCCTACAGGAGCAGGACTTGGTGGTGGAAGCAGCAATGCTGCAACTGCGCTATGGGCAGCAAATCAGTTTAATGGTTGTCTTGCCACTGAGAAGGAGCTCCAAGAATGGTCGAGTGAGATTGGTTCAGATGTTCCCTTCTTTTTCTCTCAAGGTGCAGCCTATTGTACTGGTCGTGGTGAGGTTGTTCAAAATATTCCCCCACCTGTACCCTTTGACATTCCGATGGTTCTTATAAAGCCTCAGCAGGCATGTTCAACAGCTGAAGTTTACAAGCGCCTGCAGTTGGATGCAACTAGTAGTGTTGATCCTTTAAAATTGCTGGAAAGAATCTCAGTGAATGGAATATCGCAAGATGTTTGCATCAATGATTTAGAACCTCCAGCATTTCAAGTTCTTCCATCTCTTAAAAGATTGAAGCAGCGAGTACTTGCTGCTAGCCGTGGACAATATGATGCTGTTTTCATGTCTGGAAGGTACACTCATCGCATCGCCTATGAAGATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009509 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050515

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

350

Amino Acids

38.9

Weight (kDa)

9.03

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	155 - 232	2.5e-14	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26930
fragaria_vesca	FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650
malus_domestica	MD03G1163100.v1.1
prunus_persica	Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1
pyrus_communis	pycom5153684g00180
rosa_chinensis	RchiOBHm_Chr5g0050131
rosa_laevigata	RLG00000034688
rosa_multiflora	Rmu_sc0002289.1_g000014 Rmu_sc0002289.1_g000015
rosa_roxburghii	Rroxscaffold_1G00030810 Rroxscaffold_3G00235880 Rroxscaffold_3G00235890 Rroxscaffold_3G00235900
rosa_rugosa	Rorug05G0259000
rosa_samantha	Rh5AG330800 Rh5BG341500 Rh5CG368000 Rh5DG354300
rosa_wichuraiana	Rw5G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	779
AasI	GACNNNNNNGTC	1 cut(s)	436
AccI	GTMKAC	2 cut(s)	201, 428
AciI	CCGC	3 cut(s)	97, 257, 260
AclWI	GGATC	2 cut(s)	200, 845
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	463
AcuI	CTGAAG	1 cut(s)	828
AfaI	GTAC	4 cut(s)	712, 753, 972, 1022
AfiI	CCNNNNNNNGG	1 cut(s)	829
AgsI	TTSAA	6 cut(s)	139, 267, 734, 801, 935, 961
AhlI	ACTAGT	1 cut(s)	839
AluBI	AGCT	2 cut(s)	643, 806
AluI	AGCT	2 cut(s)	643, 806
Alw21I	GWGCWC	1 cut(s)	645
AlwI	GGATC	2 cut(s)	200, 845
AoxI	GGCC	2 cut(s)	52, 477
ApeKI	GCWGC	8 cut(s)	8, 70, 576, 584, 602, 701, 964, 977
ApoI	RAATTY	1 cut(s)	463
AseI	ATTAAT	1 cut(s)	297
AspLEI	GCGC	2 cut(s)	595, 822
AspS9I	GGNCC	2 cut(s)	126, 478
AsuHPI	GGTGA	2 cut(s)	393, 734
AsuII	TTCGAA	1 cut(s)	90
AsuNHI	GCTAGC	1 cut(s)	980
AvaII	GGWCC	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	645
BbsI	GAAGAC	1 cut(s)	506
Bbv12I	GWGCWC	1 cut(s)	645
BbvCI	CCTCAGC	1 cut(s)	786
BbvI	GCAGC	7 cut(s)	82, 571, 588, 614, 713, 964, 976
BccI	CCATC	3 cut(s)	326, 763, 952
BceAI	ACGGC	1 cut(s)	969
BcuI	ACTAGT	1 cut(s)	839
BfaI	CTAG	2 cut(s)	840, 981
BfmI	CTRYAG	3 cut(s)	490, 549, 824
BfoI	RGCGCY	1 cut(s)	823
BisI	GCNGC	9 cut(s)	9, 71, 260, 577, 585, 603, 702, 965, 978
BlsI	GCNGC	9 cut(s)	10, 72, 261, 578, 586, 604, 703, 966, 979
BmcAI	AGTACT	1 cut(s)	972
Bme18I	GGWCC	1 cut(s)	126
BmgT120I	GGNCC	2 cut(s)	126, 478
BmiI	GGNNCC	3 cut(s)	127, 255, 447
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	5 cut(s)	359, 823, 915, 988, 1041
BmtI	GCTAGC	1 cut(s)	984
BmuI	ACTGGG	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	506
BpmI	CTGGAG	1 cut(s)	909
Bpu10I	CCTNAGC	1 cut(s)	786
Bpu14I	TTCGAA	1 cut(s)	90
BpuEI	CTTGAG	2 cut(s)	328, 678
BsaJI	CCNNGG	2 cut(s)	373, 985
Bsc4I	CCNNNNNNNGG	1 cut(s)	829
Bse1I	ACTGG	3 cut(s)	18, 508, 718
Bse3DI	GCAATG	1 cut(s)	586
BseDI	CCNNGG	2 cut(s)	373, 985
BseGI	GGATG	1 cut(s)	838
BseLI	CCNNNNNNNGG	1 cut(s)	829
BseMI	GCAATG	1 cut(s)	586
BseMII	CTCAG	4 cut(s)	56, 624, 800, 891
BseNI	ACTGG	3 cut(s)	18, 508, 718
BseXI	GCAGC	7 cut(s)	82, 571, 588, 614, 713, 964, 976
BsgI	GTGCAG	1 cut(s)	720
BshFI	GGCC	2 cut(s)	54, 479
BsiHKAI	GWGCWC	1 cut(s)	645
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	829
BsmFI	GGGAC	1 cut(s)	63
BsmI	GAATGC	1 cut(s)	106
BsnI	GGCC	2 cut(s)	54, 479
Bsp119I	TTCGAA	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	645
Bsp143I	GATC	3 cut(s)	205, 418, 850
BspACI	CCGC	3 cut(s)	97, 257, 260
BspANI	GGCC	2 cut(s)	54, 479
BspCNI	CTCAG	4 cut(s)	55, 625, 799, 890
BspHI	TCATGA	1 cut(s)	340
BspLI	GGNNCC	3 cut(s)	127, 255, 447
BspMAI	CTGCAG	1 cut(s)	828
BspOI	GCTAGC	1 cut(s)	984
BspPI	GGATC	2 cut(s)	200, 845
BspT104I	TTCGAA	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	586
BsrI	ACTGG	3 cut(s)	18, 508, 718
BssECI	CCNNGG	2 cut(s)	373, 985
BssMI	GATC	3 cut(s)	205, 418, 850
BssNAI	GTATAC	1 cut(s)	202
BssT1I	CCWWGG	1 cut(s)	373
Bst1107I	GTATAC	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	279
BstBI	TTCGAA	1 cut(s)	90
BstC8I	GCNNGC	4 cut(s)	6, 792, 824, 982
BstDEI	CTNAG	4 cut(s)	42, 633, 786, 877
BstDSI	CCRYGG	1 cut(s)	985
BstF5I	GGATG	1 cut(s)	838
BstH2I	RGCGCY	1 cut(s)	823
BstHHI	GCGC	2 cut(s)	595, 822
BstKTI	GATC	3 cut(s)	208, 421, 853
BstMBI	GATC	3 cut(s)	205, 418, 850
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 268, 590, 599
BstNSI	RCATGY	1 cut(s)	798
BstSFI	CTRYAG	3 cut(s)	490, 549, 824
BstV1I	GCAGC	7 cut(s)	82, 571, 588, 614, 713, 964, 976
BstV2I	GAAGAC	1 cut(s)	506
BstZ17I	GTATAC	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	54, 479
BtgI	CCRYGG	1 cut(s)	985
BtgZI	GCGATG	2 cut(s)	1013, 1018
BtsCI	GGATG	1 cut(s)	838
BtsIMutI	CAGTG	4 cut(s)	11, 275, 630, 885
Cac8I	GCNNGC	4 cut(s)	6, 792, 824, 982
CciI	TCATGA	1 cut(s)	340
CfoI	GCGC	2 cut(s)	595, 822
Cfr13I	GGNCC	2 cut(s)	126, 478
Csp6I	GTAC	4 cut(s)	711, 752, 971, 1021
CviAII	CATG	6 cut(s)	122, 166, 341, 362, 795, 1009
CviQI	GTAC	4 cut(s)	711, 752, 971, 1021
DdeI	CTNAG	4 cut(s)	42, 633, 786, 877
DpnI	GATC	3 cut(s)	207, 420, 852
DpnII	GATC	3 cut(s)	205, 418, 850
DraI	TTTAAA	1 cut(s)	858
DrdI	GACNNNNNNGTC	1 cut(s)	436
DseDI	GACNNNNNNGTC	1 cut(s)	436
EaeI	YGGCCR	1 cut(s)	52
EciI	GGCGGA	1 cut(s)	246
Ecl136II	GAGCTC	1 cut(s)	643
Eco130I	CCWWGG	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	643
Eco57I	CTGAAG	1 cut(s)	828
EcoICRI	GAGCTC	1 cut(s)	643
EcoO109I	RGGNCCY	2 cut(s)	126, 478
EcoT14I	CCWWGG	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	6 cut(s)	125, 169, 344, 365, 798, 1012
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	6 cut(s)	121, 165, 340, 361, 794, 1008
FblI	GTMKAC	2 cut(s)	201, 428
Fnu4HI	GCNGC	9 cut(s)	9, 71, 260, 577, 585, 603, 702, 965, 978
FokI	GGATG	1 cut(s)	845
FriOI	GRGCYC	1 cut(s)	645
Fsp4HI	GCNGC	9 cut(s)	9, 71, 260, 577, 585, 603, 702, 965, 978
FspBI	CTAG	2 cut(s)	840, 981
GlaI	GCGC	2 cut(s)	594, 821
GluI	GCNGC	9 cut(s)	9, 71, 260, 577, 585, 603, 702, 965, 978
GsuI	CTGGAG	1 cut(s)	909
HaeII	RGCGCY	1 cut(s)	823
HaeIII	GGCC	2 cut(s)	54, 479
HhaI	GCGC	2 cut(s)	595, 822
Hin1II	CATG	6 cut(s)	125, 169, 344, 365, 798, 1012
Hin6I	GCGC	2 cut(s)	593, 820
HinP1I	GCGC	2 cut(s)	593, 820
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HinfI	GANTC	3 cut(s)	162, 526, 873
HphI	GGTGA	2 cut(s)	393, 734
Hpy166II	GTNNAC	6 cut(s)	119, 202, 429, 814, 989, 1023
Hpy188I	TCNGA	3 cut(s)	161, 673, 768
Hpy188III	TCNNGA	6 cut(s)	150, 209, 307, 341, 533, 1014
Hpy8I	GTNNAC	6 cut(s)	119, 202, 429, 814, 989, 1023
HpyAV	CCTTC	3 cut(s)	631, 691, 1011
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	9 cut(s)	11, 70, 106, 291, 587, 701, 826, 836, 906
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 268, 590, 599
HpyF3I	CTNAG	4 cut(s)	42, 633, 786, 877
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	6 cut(s)	125, 169, 344, 365, 798, 1012
HspAI	GCGC	2 cut(s)	593, 820
Kzo9I	GATC	3 cut(s)	205, 418, 850
LmnI	GCTCC	4 cut(s)	259, 554, 640, 648
Lsp1109I	GCAGC	7 cut(s)	82, 571, 588, 614, 713, 964, 976
LweI	GCATC	5 cut(s)	359, 823, 915, 988, 1041
MaeI	CTAG	2 cut(s)	840, 981
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	2 cut(s)	273, 399
MalI	GATC	3 cut(s)	207, 420, 852
MboI	GATC	3 cut(s)	205, 418, 850
MboII	GAAGA	4 cut(s)	341, 508, 511, 932
MhlI	GDGCHC	1 cut(s)	645
MluCI	AATT	5 cut(s)	82, 463, 514, 860, 1048
MlyI	GAGTC	1 cut(s)	171
MmeI	TCCRAC	1 cut(s)	810
MnlI	CCTC	6 cut(s)	139, 244, 415, 718, 795, 933
MseI	TTAA	7 cut(s)	297, 387, 483, 615, 857, 951, 1051
MslI	CAYNNNNRTG	1 cut(s)	767
MspA1I	CMGCKG	1 cut(s)	806
Mva1269I	GAATGC	1 cut(s)	106
MwoI	GCNNNNNNNGC	4 cut(s)	17, 268, 590, 599
NdeII	GATC	3 cut(s)	205, 418, 850
NheI	GCTAGC	1 cut(s)	980
NlaIII	CATG	6 cut(s)	125, 169, 344, 365, 798, 1012
NlaIV	GGNNCC	3 cut(s)	127, 255, 447
NmeAIII	GCCGAG	1 cut(s)	30
NmuCI	GTSAC	2 cut(s)	273, 399
NspI	RCATGY	1 cut(s)	798
NspV	TTCGAA	1 cut(s)	90
PagI	TCATGA	1 cut(s)	340
PctI	GAATGC	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	526, 873
PkrI	GCNGC	9 cut(s)	10, 72, 261, 578, 586, 604, 703, 966, 979
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PpuMI	RGGWCCY	1 cut(s)	126
PshBI	ATTAAT	1 cut(s)	297
PsiI	TTATAA	1 cut(s)	779
Psp124BI	GAGCTC	1 cut(s)	645
Psp5II	RGGWCCY	1 cut(s)	126
PspN4I	GGNNCC	3 cut(s)	127, 255, 447
PspPI	GGNCC	2 cut(s)	126, 478
PspPPI	RGGWCCY	1 cut(s)	126
PstI	CTGCAG	1 cut(s)	828
PvuII	CAGCTG	1 cut(s)	806
RsaI	GTAC	4 cut(s)	712, 753, 972, 1022
RsaNI	GTAC	4 cut(s)	711, 752, 971, 1021
RseI	CAYNNNNRTG	1 cut(s)	767
SacI	GAGCTC	1 cut(s)	645
SalI	GTCGAC	1 cut(s)	427
SaqAI	TTAA	7 cut(s)	297, 387, 483, 615, 857, 951, 1051
SatI	GCNGC	9 cut(s)	9, 71, 260, 577, 585, 603, 702, 965, 978
Sau3AI	GATC	3 cut(s)	205, 418, 850
Sau96I	GGNCC	2 cut(s)	126, 478
ScaI	AGTACT	1 cut(s)	972
SchI	GAGTC	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	645
SetI	ASST	9 cut(s)	118, 243, 645, 700, 729, 751, 808, 925, 1022
SfaNI	GCATC	5 cut(s)	359, 823, 915, 988, 1041
SfcI	CTRYAG	3 cut(s)	490, 549, 824
SfuI	TTCGAA	1 cut(s)	90
SinI	GGWCC	1 cut(s)	126
SmiMI	CAYNNNNRTG	1 cut(s)	767
SmlI	CTYRAG	2 cut(s)	307, 693
SmoI	CTYRAG	2 cut(s)	307, 693
SpeI	ACTAGT	1 cut(s)	839
Sse9I	AATT	5 cut(s)	82, 463, 514, 860, 1048
SsiI	CCGC	3 cut(s)	97, 257, 260
SspI	AATATT	1 cut(s)	739
SspMI	CTAG	2 cut(s)	840, 981
SstI	GAGCTC	1 cut(s)	645
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	1 cut(s)	279
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	4 cut(s)	90, 149, 428, 656
TasI	AATT	5 cut(s)	82, 463, 514, 860, 1048
TatI	WGTACW	2 cut(s)	710, 970
TauI	GCSGC	1 cut(s)	262
TfiI	GAWTC	2 cut(s)	526, 873
Tru1I	TTAA	7 cut(s)	297, 387, 483, 615, 857, 951, 1051
Tru9I	TTAA	7 cut(s)	297, 387, 483, 615, 857, 951, 1051
TscAI	CASTG	4 cut(s)	18, 282, 637, 885
TseFI	GTSAC	2 cut(s)	273, 399
TseI	GCWGC	8 cut(s)	8, 70, 576, 584, 602, 701, 964, 977
Tsp45I	GTSAC	2 cut(s)	273, 399
TspDTI	ATGAA	5 cut(s)	228, 329, 350, 518, 997
TspRI	CASTG	4 cut(s)	18, 282, 637, 885
VpaK11BI	GGWCC	1 cut(s)	126
VspI	ATTAAT	1 cut(s)	297
XapI	RAATTY	1 cut(s)	463
XceI	RCATGY	1 cut(s)	798
XmiI	GTMKAC	2 cut(s)	201, 428
XspI	CTAG	2 cut(s)	840, 981
ZrmI	AGTACT	1 cut(s)	972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.