Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012527_4311101_to_5153684

Orthogroup ID

OG0005876

Physical Location & Seq

Genomic Coordinates Forward (+)

332620 .. 337713

Gene Structure 5094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom5153684g00180.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGACCATGGCCATTGCTTCCTCTCGTTTGCTCTGCCAGAACCCTCCTCCTACCTTCCTCCACCATTCCCCCAATTTTGTCGGAAATAGCAGCAGTAGCAGCAGCCTCAGGCTCTCTTGGCTCAGGTCACAGTCGCATAGGTGCTCTTTTTCTCACTCAAAGTCTGGAAATCAAAAGACCCCCAAATTTGCCAGAAAACAAGTAGAGATAGTGTATGATCCTGATGAAAGGATAAACAAGTTGGCAGATGAGGTTGAAGAGAAGGCCGCTCCGGTTTCAAGGCTCACCCTTTTCTCCCCTTGCAAGATAAATGTTTTCTTGAGAATAACTGGCAAGAGGGAAGATGGGTTTCACGATTTGGCATCTCTCTTTCATGTAATAAGTCTTGGAGATGTAATTAAGTTCTCTTTGTCACCCTCAAAAACTAAAGATCGTCTTTCGACCAATGTGTCTGGGGTGCCCCTTGATGATAGAAATTTGATTATTAAGGCCCTTAATCTCTACAGGAAGAAGACGGGTAGCAACAATTTCTTTTGGATTCATCTTGACAAGAAAGTGCCAACAGGAGCAGGGCTTGGTGGTGGAAGCAGCAATGCTGCAACTGCGCTATGGGCAGCAAATCAGTTTAGTGGTCTTCTTGCCACCGAGAAGGAACTCCAAGAATGGTCGAGTGAGATTGGTTCAGATGTTCCCTTCTTTTTCTCTCAAGGAGCAGCCTATTGTACTGGTCGGGGTGAGGTTGTTCAAAATATTAGTCCAGCCTTACCATTGGACATTCCAATGGTTCTTATAAAGCCCCAACAGGCATGTTCGACAGCTGAAGTTTACAAGTGCCTCCAATTGGATAAAACTAATAAGGTTGATCCTTTAACACTGCTGGAGAGAATCTCAAGGCATGGAATATCACAAGATGTTTGCATAAATGATTTAGAACCTCCAGCATTTGATGTTCTTCCATCTCTTAAAAGATTAAAGCAGCGAGTACTTGCCGCTAGCCGTGGACAATATGACGCTGTTTTTATGTCTGGAAGTGGAAGCACTATTGTTGGGATTGGTTCTCCAGACCCTCCCCAATTTGTATATGACGATGATGAATATAAGGATGTATTTTTGTCAGAGGCGAACTTTCTGACTCGTGACGAAAATAACTGGTATAGGGAACCTGCTTCGAGAAGTGCTTCTGGCTCATCCTCCGAATTTTCCGGGTCGATTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009509 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050515

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

406

Amino Acids

44.57

Weight (kDa)

7.61

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26930
fragaria_vesca	FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650
malus_domestica	MD03G1163100.v1.1
prunus_persica	Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1
pyrus_communis	pycom5153684g00180
rosa_chinensis	RchiOBHm_Chr5g0050131
rosa_laevigata	RLG00000034688
rosa_multiflora	Rmu_sc0002289.1_g000014 Rmu_sc0002289.1_g000015
rosa_roxburghii	Rroxscaffold_1G00030810 Rroxscaffold_3G00235880 Rroxscaffold_3G00235890 Rroxscaffold_3G00235900
rosa_rugosa	Rorug05G0259000
rosa_samantha	Rh5AG330800 Rh5BG341500 Rh5CG368000 Rh5DG354300
rosa_wichuraiana	Rw5G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	791
AasI	GACNNNNNNGTC	1 cut(s)	448
Acc36I	ACCTGC	1 cut(s)	1171
AccB1I	GGYRCC	1 cut(s)	457
AccBSI	CCGCTC	1 cut(s)	269
AciI	CCGC	2 cut(s)	267, 990
AclWI	GGATC	2 cut(s)	212, 857
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	3 cut(s)	185, 475, 1196
AcuI	CTGAAG	1 cut(s)	840
AfaI	GTAC	2 cut(s)	724, 984
AfiI	CCNNNNNNNGG	1 cut(s)	841
AgsI	TTSAA	3 cut(s)	257, 279, 746
AluBI	AGCT	1 cut(s)	818
AluI	AGCT	1 cut(s)	818
Alw21I	GWGCWC	1 cut(s)	146
AlwI	GGATC	2 cut(s)	212, 857
AoxI	GGCC	3 cut(s)	9, 264, 489
ApeKI	GCWGC	8 cut(s)	90, 99, 102, 588, 596, 614, 713, 976
ApoI	RAATTY	3 cut(s)	185, 475, 1196
ArsI	GACNNNNNNTTYG	2 cut(s)	739, 771
Asp700I	GAANNNNTTC	1 cut(s)	1177
AspLEI	GCGC	1 cut(s)	607
AspS9I	GGNCC	1 cut(s)	490
AsuC2I	CCSGG	1 cut(s)	1204
AsuHPI	GGTGA	3 cut(s)	277, 405, 746
AsuNHI	GCTAGC	1 cut(s)	992
AxyI	CCTNAGG	1 cut(s)	107
BaeGI	GKGCMC	1 cut(s)	462
BalI	TGGCCA	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	457
BauI	CACGAG	1 cut(s)	1134
BbsI	GAAGAC	2 cut(s)	518, 626
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	8 cut(s)	102, 111, 114, 583, 600, 626, 725, 988
BccI	CCATC	2 cut(s)	338, 964
BceAI	ACGGC	1 cut(s)	981
BcnI	CCSGG	1 cut(s)	1204
BfaI	CTAG	1 cut(s)	993
BfmI	CTRYAG	1 cut(s)	502
BfuAI	ACCTGC	1 cut(s)	1171
BmcAI	AGTACT	1 cut(s)	984
Bme1390I	CCNGG	1 cut(s)	1204
BmgT120I	GGNCC	1 cut(s)	490
BmiI	GGNNCC	2 cut(s)	459, 1161
BmrFI	CCNGG	1 cut(s)	1204
BmsI	GCATC	1 cut(s)	371
BmtI	GCTAGC	1 cut(s)	996
BpiI	GAAGAC	2 cut(s)	518, 626
BplI	GAGNNNNNCTC	2 cut(s)	872, 904
BpmI	CTGGAG	3 cut(s)	899, 921, 1044
Bpu10I	CCTNAGC	1 cut(s)	122
BpuEI	CTTGAG	3 cut(s)	340, 690, 874
BpuMI	CCSGG	1 cut(s)	1204
BsaJI	CCNNGG	2 cut(s)	6, 997
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	1 cut(s)	841
Bse1I	ACTGG	3 cut(s)	334, 730, 1154
Bse21I	CCTNAGG	1 cut(s)	107
Bse3DI	GCAATG	2 cut(s)	12, 598
BseDI	CCNNGG	2 cut(s)	6, 997
BseGI	GGATG	2 cut(s)	1108, 1187
BseLI	CCNNNNNNNGG	1 cut(s)	841
BseMI	GCAATG	2 cut(s)	12, 598
BseMII	CTCAG	2 cut(s)	121, 136
BseNI	ACTGG	3 cut(s)	334, 730, 1154
BseRI	GAGGAG	1 cut(s)	36
BseSI	GKGCMC	1 cut(s)	462
BseXI	GCAGC	8 cut(s)	102, 111, 114, 583, 600, 626, 725, 988
BshFI	GGCC	3 cut(s)	11, 266, 491
BshNI	GGYRCC	1 cut(s)	457
BsiHKAI	GWGCWC	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	272, 1203
BslI	CCNNNNNNNGG	1 cut(s)	841
BsnI	GGCC	3 cut(s)	11, 266, 491
Bsp1286I	GDGCHC	2 cut(s)	146, 462
Bsp143I	GATC	3 cut(s)	217, 430, 862
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	2 cut(s)	267, 990
BspANI	GGCC	3 cut(s)	11, 266, 491
BspCNI	CTCAG	2 cut(s)	120, 135
BspLI	GGNNCC	2 cut(s)	459, 1161
BspMI	ACCTGC	1 cut(s)	1171
BspOI	GCTAGC	1 cut(s)	996
BspPI	GGATC	2 cut(s)	212, 857
BspT107I	GGYRCC	1 cut(s)	457
BsrBI	CCGCTC	1 cut(s)	269
BsrDI	GCAATG	2 cut(s)	12, 598
BsrI	ACTGG	3 cut(s)	334, 730, 1154
BssECI	CCNNGG	2 cut(s)	6, 997
BssMI	GATC	3 cut(s)	217, 430, 862
BssSI	CACGAG	1 cut(s)	1134
BssT1I	CCWWGG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	1134
Bst4CI	ACNGT	1 cut(s)	132
Bst6I	CTCTTC	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	994
BstDEI	CTNAG	2 cut(s)	107, 122
BstDSI	CCRYGG	2 cut(s)	6, 997
BstF5I	GGATG	2 cut(s)	1108, 1187
BstHHI	GCGC	1 cut(s)	607
BstKTI	GATC	3 cut(s)	220, 433, 865
BstMBI	GATC	3 cut(s)	217, 430, 862
BstMWI	GCNNNNNNNGC	5 cut(s)	96, 99, 118, 602, 611
BstNSI	RCATGY	1 cut(s)	810
BstSCI	CCNGG	1 cut(s)	1202
BstSFI	CTRYAG	1 cut(s)	502
BstSLI	GKGCMC	1 cut(s)	462
BstV1I	GCAGC	8 cut(s)	102, 111, 114, 583, 600, 626, 725, 988
BstV2I	GAAGAC	2 cut(s)	518, 626
Bsu36I	CCTNAGG	1 cut(s)	107
BsuRI	GGCC	3 cut(s)	11, 266, 491
BtgI	CCRYGG	2 cut(s)	6, 997
BtsCI	GGATG	2 cut(s)	1108, 1187
BtsI	GCAGTG	1 cut(s)	872
BtsIMutI	CAGTG	1 cut(s)	872
BveI	ACCTGC	1 cut(s)	1171
Cac8I	GCNNGC	1 cut(s)	994
CfoI	GCGC	1 cut(s)	607
Cfr13I	GGNCC	1 cut(s)	490
CseI	GACGC	1 cut(s)	1019
Csp6I	GTAC	2 cut(s)	723, 983
CviAII	CATG	4 cut(s)	7, 374, 807, 896
CviQI	GTAC	2 cut(s)	723, 983
DdeI	CTNAG	2 cut(s)	107, 122
DpnI	GATC	3 cut(s)	219, 432, 864
DpnII	GATC	3 cut(s)	217, 430, 862
DrdI	GACNNNNNNGTC	1 cut(s)	448
DseDI	GACNNNNNNGTC	1 cut(s)	448
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	840
Eco81I	CCTNAGG	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	4 cut(s)	10, 377, 810, 899
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FatI	CATG	4 cut(s)	6, 373, 806, 895
FokI	GGATG	2 cut(s)	1115, 1174
FspBI	CTAG	1 cut(s)	993
GlaI	GCGC	1 cut(s)	606
GsuI	CTGGAG	3 cut(s)	899, 921, 1044
HaeIII	GGCC	3 cut(s)	11, 266, 491
HapII	CCGG	2 cut(s)	272, 1203
HgaI	GACGC	1 cut(s)	1019
HhaI	GCGC	1 cut(s)	607
Hin1II	CATG	4 cut(s)	10, 377, 810, 899
Hin6I	GCGC	1 cut(s)	605
HinP1I	GCGC	1 cut(s)	605
HinfI	GANTC	3 cut(s)	538, 885, 1132
HpaII	CCGG	2 cut(s)	272, 1203
HphI	GGTGA	3 cut(s)	277, 405, 746
Hpy166II	GTNNAC	2 cut(s)	826, 1001
Hpy188I	TCNGA	5 cut(s)	83, 685, 1117, 1131, 1195
Hpy188III	TCNNGA	9 cut(s)	165, 221, 319, 353, 545, 1026, 1061, 1136, 1170
Hpy8I	GTNNAC	2 cut(s)	826, 1001
HpyAV	CCTTC	4 cut(s)	64, 256, 643, 703
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4V	TGCA	3 cut(s)	303, 599, 918
HpyF10VI	GCNNNNNNNGC	5 cut(s)	96, 99, 118, 602, 611
HpyF3I	CTNAG	2 cut(s)	107, 122
Hsp92II	CATG	4 cut(s)	10, 377, 810, 899
HspAI	GCGC	1 cut(s)	605
Kzo9I	GATC	3 cut(s)	217, 430, 862
LmnI	GCTCC	3 cut(s)	274, 566, 710
Lsp1109I	GCAGC	8 cut(s)	102, 111, 114, 583, 600, 626, 725, 988
LweI	GCATC	1 cut(s)	371
MaeI	CTAG	1 cut(s)	993
MaeIII	GTNAC	3 cut(s)	126, 411, 1136
MalI	GATC	3 cut(s)	219, 432, 864
MbiI	CCGCTC	1 cut(s)	269
MboI	GATC	3 cut(s)	217, 430, 862
MboII	GAAGA	6 cut(s)	269, 353, 520, 523, 626, 944
MfeI	CAATTG	1 cut(s)	839
MhlI	GDGCHC	2 cut(s)	146, 462
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	8 cut(s)	73, 185, 396, 475, 526, 839, 1073, 1196
MluNI	TGGCCA	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	1126
MmeI	TCCRAC	1 cut(s)	61
Mox20I	TGGCCA	1 cut(s)	11
MroXI	GAANNNNTTC	1 cut(s)	1177
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	6 cut(s)	399, 486, 495, 869, 963, 971
MslI	CAYNNNNRTG	1 cut(s)	779
Msp20I	TGGCCA	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	818
MspI	CCGG	2 cut(s)	272, 1203
MspR9I	CCNGG	1 cut(s)	1204
MunI	CAATTG	1 cut(s)	839
MwoI	GCNNNNNNNGC	5 cut(s)	96, 99, 118, 602, 611
NciI	CCSGG	1 cut(s)	1204
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	3 cut(s)	217, 430, 862
NheI	GCTAGC	1 cut(s)	992
NlaIII	CATG	4 cut(s)	10, 377, 810, 899
NlaIV	GGNNCC	2 cut(s)	459, 1161
NmuCI	GTSAC	3 cut(s)	126, 411, 1136
NspI	RCATGY	1 cut(s)	810
PdmI	GAANNNNTTC	1 cut(s)	1177
PfeI	GAWTC	2 cut(s)	538, 885
PleI	GAGTC	1 cut(s)	1126
PpsI	GAGTC	1 cut(s)	1126
PsiI	TTATAA	1 cut(s)	791
PspN4I	GGNNCC	2 cut(s)	459, 1161
PspPI	GGNCC	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	818
RsaI	GTAC	2 cut(s)	724, 984
RsaNI	GTAC	2 cut(s)	723, 983
RseI	CAYNNNNRTG	1 cut(s)	779
SaqAI	TTAA	6 cut(s)	399, 486, 495, 869, 963, 971
Sau3AI	GATC	3 cut(s)	217, 430, 862
Sau96I	GGNCC	1 cut(s)	490
ScaI	AGTACT	1 cut(s)	984
SchI	GAGTC	1 cut(s)	1126
ScrFI	CCNGG	1 cut(s)	1204
SduI	GDGCHC	2 cut(s)	146, 462
SetI	ASST	9 cut(s)	56, 128, 143, 255, 741, 820, 861, 937, 1165
SfaNI	GCATC	1 cut(s)	371
SfcI	CTRYAG	1 cut(s)	502
SmiMI	CAYNNNNRTG	1 cut(s)	779
SmlI	CTYRAG	3 cut(s)	319, 705, 889
SmoI	CTYRAG	3 cut(s)	319, 705, 889
Sse9I	AATT	8 cut(s)	73, 185, 396, 475, 526, 839, 1073, 1196
SsiI	CCGC	2 cut(s)	267, 990
SspI	AATATT	1 cut(s)	751
SspMI	CTAG	1 cut(s)	993
StyD4I	CCNGG	1 cut(s)	1202
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	132
TaqI	TCGA	5 cut(s)	440, 668, 812, 1169, 1208
TasI	AATT	8 cut(s)	73, 185, 396, 475, 526, 839, 1073, 1196
TatI	WGTACW	2 cut(s)	722, 982
TauI	GCSGC	2 cut(s)	269, 992
TfiI	GAWTC	2 cut(s)	538, 885
Tru1I	TTAA	6 cut(s)	399, 486, 495, 869, 963, 971
Tru9I	TTAA	6 cut(s)	399, 486, 495, 869, 963, 971
TscAI	CASTG	1 cut(s)	879
TseFI	GTSAC	3 cut(s)	126, 411, 1136
TseI	GCWGC	8 cut(s)	90, 99, 102, 588, 596, 614, 713, 976
Tsp45I	GTSAC	3 cut(s)	126, 411, 1136
TspDTI	ATGAA	4 cut(s)	240, 362, 530, 1107
TspRI	CASTG	1 cut(s)	879
XapI	RAATTY	3 cut(s)	185, 475, 1196
XceI	RCATGY	1 cut(s)	810
XmnI	GAANNNNTTC	1 cut(s)	1177
XspI	CTAG	1 cut(s)	993
ZrmI	AGTACT	1 cut(s)	984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.