Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005876

Physical Location & Seq

Genomic Coordinates Reverse (-)

41406306 .. 41412051

Gene Structure 5746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00030810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGTTCTTATAAAGCCTCAGCAGGCATGTTCAACAGCTGAAGTTTACAAGCGCCTGCAGTTGGATACAACTAGTAGTGTTGATCCTTTAAAATTGCTGGAAAGAATCTCAGTGAATGGAATATCGCAAGATGTTTGCATCAATGATTTAGAACCTCCAGCATTTCAAGTTCTTCCATCTCTTAAAAGATTGAAGCAGCGAGTACTTGCTGCTAGCCGTGGAGAATATGATGCTGTTTTCATGTCTGGAAGTGGAAGCACTATTGTTGGGATTGGTTCTCCAGATCCTCCTCAGTTTTTATATGATGACAACGAATACAAGGATGTGTTTTTGTCAGAGGCCAACTTTCTCACTCGCGAAGAAAATCATTGGTACAGAGAACCTTCATCCAGAAGTGCTAGTGGCCCATCCTCTGATTTTTCCCAGTCTATTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009509 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050515

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

145

Amino Acids

16.09

Weight (kDa)

4.84

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26930
fragaria_vesca	FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650
malus_domestica	MD03G1163100.v1.1
prunus_persica	Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1
pyrus_communis	pycom5153684g00180
rosa_chinensis	RchiOBHm_Chr5g0050131
rosa_laevigata	RLG00000034688
rosa_multiflora	Rmu_sc0002289.1_g000014 Rmu_sc0002289.1_g000015
rosa_roxburghii	Rroxscaffold_1G00030810 Rroxscaffold_3G00235880 Rroxscaffold_3G00235890 Rroxscaffold_3G00235900
rosa_rugosa	Rorug05G0259000
rosa_samantha	Rh5AG330800 Rh5BG341500 Rh5CG368000 Rh5DG354300
rosa_wichuraiana	Rw5G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
AccII	CGCG	1 cut(s)	357
AclWI	GGATC	2 cut(s)	77, 278
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	2 cut(s)	204, 374
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	3 cut(s)	33, 167, 193
AhlI	ACTAGT	1 cut(s)	71
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
AlwI	GGATC	2 cut(s)	77, 278
AoxI	GGCC	2 cut(s)	339, 403
ApeKI	GCWGC	2 cut(s)	196, 209
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	404
AsuNHI	GCTAGC	1 cut(s)	212
BbvCI	CCTCAGC	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	196, 208
BccI	CCATC	2 cut(s)	184, 415
BceAI	ACGGC	1 cut(s)	201
BciVI	GTATCC	1 cut(s)	58
BcuI	ACTAGT	1 cut(s)	71
BfaI	CTAG	3 cut(s)	72, 213, 399
BfmI	CTRYAG	1 cut(s)	56
BfoI	RGCGCY	1 cut(s)	55
BfuI	GTATCC	1 cut(s)	58
BisI	GCNGC	2 cut(s)	197, 210
BlsI	GCNGC	2 cut(s)	198, 211
BmcAI	AGTACT	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	404
BmrI	ACTGGG	1 cut(s)	418
BmsI	GCATC	2 cut(s)	147, 220
BmtI	GCTAGC	1 cut(s)	216
BmuI	ACTGGG	1 cut(s)	418
BpmI	CTGGAG	2 cut(s)	141, 264
Bpu10I	CCTNAGC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	424
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	3 cut(s)	328, 386, 407
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	3 cut(s)	32, 123, 305
BseNI	ACTGG	1 cut(s)	424
BseRI	GAGGAG	1 cut(s)	279
BseXI	GCAGC	2 cut(s)	196, 208
Bsh1236I	CGCG	1 cut(s)	357
BshFI	GGCC	2 cut(s)	341, 405
BslI	CCNNNNNNNGG	1 cut(s)	61
BsnI	GGCC	2 cut(s)	341, 405
Bsp143I	GATC	2 cut(s)	82, 283
Bsp68I	TCGCGA	1 cut(s)	357
BspANI	GGCC	2 cut(s)	341, 405
BspCNI	CTCAG	3 cut(s)	31, 122, 304
BspFNI	CGCG	1 cut(s)	357
BspMAI	CTGCAG	1 cut(s)	60
BspOI	GCTAGC	1 cut(s)	216
BspPI	GGATC	2 cut(s)	77, 278
BsrI	ACTGG	1 cut(s)	424
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	2 cut(s)	82, 283
BstC8I	GCNNGC	3 cut(s)	24, 56, 214
BstDEI	CTNAG	3 cut(s)	18, 109, 291
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	3 cut(s)	328, 386, 407
BstFNI	CGCG	1 cut(s)	357
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	2 cut(s)	85, 286
BstMBI	GATC	2 cut(s)	82, 283
BstNSI	RCATGY	1 cut(s)	30
BstSFI	CTRYAG	1 cut(s)	56
BstUI	CGCG	1 cut(s)	357
BstV1I	GCAGC	2 cut(s)	196, 208
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuI	GTATCC	1 cut(s)	58
BsuRI	GGCC	2 cut(s)	341, 405
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	3 cut(s)	328, 386, 407
BtsIMutI	CAGTG	1 cut(s)	117
BtuMI	TCGCGA	1 cut(s)	357
Cac8I	GCNNGC	3 cut(s)	24, 56, 214
CfoI	GCGC	1 cut(s)	54
Cfr13I	GGNCC	1 cut(s)	404
Csp6I	GTAC	2 cut(s)	203, 373
CviAII	CATG	2 cut(s)	27, 241
CviJI	RGCY	5 cut(s)	16, 38, 216, 341, 405
CviKI_1	RGCY	5 cut(s)	16, 38, 216, 341, 405
CviQI	GTAC	2 cut(s)	203, 373
DdeI	CTNAG	3 cut(s)	18, 109, 291
DpnI	GATC	2 cut(s)	84, 285
DpnII	GATC	2 cut(s)	82, 283
DraI	TTTAAA	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	60
FaeI	CATG	2 cut(s)	30, 244
FaiI	YATR	6 cut(s)	11, 28, 228, 242, 301, 303
FatI	CATG	2 cut(s)	26, 240
Fnu4HI	GCNGC	2 cut(s)	197, 210
FokI	GGATG	3 cut(s)	335, 373, 394
Fsp4HI	GCNGC	2 cut(s)	197, 210
FspBI	CTAG	3 cut(s)	72, 213, 399
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	2 cut(s)	197, 210
GsuI	CTGGAG	2 cut(s)	141, 264
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	341, 405
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	2 cut(s)	30, 244
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	1 cut(s)	105
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	337, 415
Hpy188III	TCNNGA	4 cut(s)	246, 281, 356, 390
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	393
HpyCH4V	TGCA	2 cut(s)	58, 138
HpyF3I	CTNAG	3 cut(s)	18, 109, 291
Hsp92II	CATG	2 cut(s)	30, 244
HspAI	GCGC	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	82, 283
LpnPI	CCDG	7 cut(s)	8, 68, 83, 171, 231, 294, 403
Lsp1109I	GCAGC	2 cut(s)	196, 208
LweI	GCATC	2 cut(s)	147, 220
MaeI	CTAG	3 cut(s)	72, 213, 399
MalI	GATC	2 cut(s)	84, 285
MboI	GATC	2 cut(s)	82, 283
MboII	GAAGA	2 cut(s)	164, 371
MflI	RGATCY	1 cut(s)	283
MluCI	AATT	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	6 cut(s)	27, 165, 297, 300, 331, 421
MseI	TTAA	2 cut(s)	89, 183
MspA1I	CMGCKG	1 cut(s)	38
MvnI	CGCG	1 cut(s)	357
NdeII	GATC	2 cut(s)	82, 283
NheI	GCTAGC	1 cut(s)	212
NlaIII	CATG	2 cut(s)	30, 244
NruI	TCGCGA	1 cut(s)	357
NspI	RCATGY	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	198, 211
PsiI	TTATAA	1 cut(s)	11
PspPI	GGNCC	1 cut(s)	404
PstI	CTGCAG	1 cut(s)	60
PsuI	RGATCY	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	38
RruI	TCGCGA	1 cut(s)	357
RsaI	GTAC	2 cut(s)	204, 374
RsaNI	GTAC	2 cut(s)	203, 373
SaqAI	TTAA	2 cut(s)	89, 183
SatI	GCNGC	2 cut(s)	197, 210
Sau3AI	GATC	2 cut(s)	82, 283
Sau96I	GGNCC	1 cut(s)	404
ScaI	AGTACT	1 cut(s)	204
SetI	ASST	3 cut(s)	40, 157, 385
SfaNI	GCATC	2 cut(s)	147, 220
SfcI	CTRYAG	1 cut(s)	56
SpeI	ACTAGT	1 cut(s)	71
Sse9I	AATT	1 cut(s)	92
SspMI	CTAG	3 cut(s)	72, 213, 399
TasI	AATT	1 cut(s)	92
TatI	WGTACW	1 cut(s)	202
TfiI	GAWTC	1 cut(s)	105
Tru1I	TTAA	2 cut(s)	89, 183
Tru9I	TTAA	2 cut(s)	89, 183
TscAI	CASTG	1 cut(s)	117
TseI	GCWGC	2 cut(s)	196, 209
TspDTI	ATGAA	2 cut(s)	229, 375
TspRI	CASTG	1 cut(s)	117
XceI	RCATGY	1 cut(s)	30
XspI	CTAG	3 cut(s)	72, 213, 399
ZrmI	AGTACT	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.