Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005876

Physical Location & Seq

Genomic Coordinates Reverse (-)

20707658 .. 20713116

Gene Structure 5459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g27650.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCTTTTTCTCAGTTTGTCCTCGGCCCTAGTCCTTGTCCCCCCAACCGCGGCCGCAGATTACGTTCAAATCTCATGGTTTGTGGCAGAAGACAAGTAGAGATAGTGTACGATCCTGATGAAAGGATAAACAAGTTGGCAGATAAGGTGGAGGTTTCAAGGCTCTCCCTCTTCTCGCCTTGCAAGATTAATGTTTTCTTGAGAATCACTAACAAAAGAGACGATGGGTTTCATGACTTGGCATCCCTCTTTCATGTAATAAGCCTCGGAGATGTGATTAAGTTCTCTTTGTCTCCTTCCAAATCCAAAGATCGTTTGTCGACCAATGTATCAGGGGTTCCCCTTGATGATAGGAATTTGATTATCAAGGCTCTTAATCTCTACAGGAAGAAGACCGGCACCCACAATTTCTTTTGGATTCATCTCGATAAGAAAGTGCCTACAGGAGCAGGACTTGGTGGTGGAAGCAGCAATGCTGCAACTGCGCTATGGGCAGCAAATCAGTTTAGTGGTAGTCTTGCCACTGAGAAGGAGCTCCAAGAATGGTCGAGTGAGATTGGTTCCGATGTTCCCTTCTTTTTCTCTCAAGGTGCAGCCTATTGTACTGGTCGTGGTGAGATTGTTCAAAATATTCCTCCACCTGTACCCTTTGACATTCCGATGGTTCTTATAAAGCCTCAGCAGGCATGTTCAACAGCTGAAGTTTACAAGCGCCTGCAGTTGGATACAACTAATAATGTTGATCCTTTAAAATTGCTGGAAAGAATCTCAGTGAATGGAATATCTCAAGATGTTTGCATCAATGATTTAGAACCTCCAGCATTTCAAGTTCTCCCCTCTCTTAAAAGATTGAAGCAGCGAGTACTTGCTGCCAGCCGTGGACAATATGATGCTGTTTTCATGTCTGGAAGTTATTGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009509 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050515

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

308

Amino Acids

34.07

Weight (kDa)

9.2

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	119 - 196	4.3e-14	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26930
fragaria_vesca	FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650
malus_domestica	MD03G1163100.v1.1
prunus_persica	Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1
pyrus_communis	pycom5153684g00180
rosa_chinensis	RchiOBHm_Chr5g0050131
rosa_laevigata	RLG00000034688
rosa_multiflora	Rmu_sc0002289.1_g000014 Rmu_sc0002289.1_g000015
rosa_roxburghii	Rroxscaffold_1G00030810 Rroxscaffold_3G00235880 Rroxscaffold_3G00235890 Rroxscaffold_3G00235900
rosa_rugosa	Rorug05G0259000
rosa_samantha	Rh5AG330800 Rh5BG341500 Rh5CG368000 Rh5DG354300
rosa_wichuraiana	Rw5G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	671
AccB1I	GGYRCC	1 cut(s)	398
AccI	GTMKAC	1 cut(s)	320
AccII	CGCG	1 cut(s)	51
AciI	CCGC	3 cut(s)	49, 51, 55
AclWI	GGATC	2 cut(s)	107, 737
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	720
AfaI	GTAC	4 cut(s)	110, 604, 645, 864
AfiI	CCNNNNNNNGG	2 cut(s)	50, 721
AgsI	TTSAA	6 cut(s)	69, 159, 626, 693, 827, 853
AluBI	AGCT	2 cut(s)	535, 698
AluI	AGCT	2 cut(s)	535, 698
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	2 cut(s)	213, 297
AlwI	GGATC	2 cut(s)	107, 737
AoxI	GGCC	2 cut(s)	25, 52
ApeKI	GCWGC	6 cut(s)	468, 476, 494, 593, 856, 869
ApoI	RAATTY	1 cut(s)	355
AseI	ATTAAT	1 cut(s)	189
AspLEI	GCGC	2 cut(s)	487, 714
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	626
BaeI	ACNNNNGTAYC	2 cut(s)	312, 345
BanI	GGYRCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	537
BbsI	GAAGAC	2 cut(s)	97, 398
Bbv12I	GWGCWC	1 cut(s)	537
BbvCI	CCTCAGC	1 cut(s)	678
BbvI	GCAGC	6 cut(s)	463, 480, 506, 605, 856, 868
BccI	CCATC	2 cut(s)	218, 655
BceAI	ACGGC	1 cut(s)	861
BciVI	GTATCC	1 cut(s)	718
BcoDI	GTCTC	2 cut(s)	213, 297
BfaI	CTAG	1 cut(s)	30
BfmI	CTRYAG	3 cut(s)	382, 441, 716
BfoI	RGCGCY	1 cut(s)	715
BfuI	GTATCC	1 cut(s)	718
BisI	GCNGC	8 cut(s)	52, 55, 469, 477, 495, 594, 857, 870
BlsI	GCNGC	8 cut(s)	53, 56, 470, 478, 496, 595, 858, 871
BmcAI	AGTACT	1 cut(s)	864
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	3 cut(s)	339, 400, 562
BmsI	GCATC	3 cut(s)	251, 807, 880
BpiI	GAAGAC	2 cut(s)	97, 398
BpmI	CTGGAG	1 cut(s)	801
Bpu10I	CCTNAGC	1 cut(s)	678
BpuEI	CTTGAG	3 cut(s)	220, 570, 771
BsaJI	CCNNGG	4 cut(s)	22, 49, 265, 877
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 721
Bse118I	RCCGGY	1 cut(s)	395
Bse1I	ACTGG	1 cut(s)	610
Bse3DI	GCAATG	1 cut(s)	478
BseDI	CCNNGG	4 cut(s)	22, 49, 265, 877
BseGI	GGATG	2 cut(s)	242, 924
BseLI	CCNNNNNNNGG	2 cut(s)	50, 721
BseMI	GCAATG	1 cut(s)	478
BseMII	CTCAG	4 cut(s)	26, 516, 692, 783
BseNI	ACTGG	1 cut(s)	610
BseX3I	CGGCCG	1 cut(s)	52
BseXI	GCAGC	6 cut(s)	463, 480, 506, 605, 856, 868
BsgI	GTGCAG	1 cut(s)	612
Bsh1236I	CGCG	1 cut(s)	51
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	2 cut(s)	27, 54
BshNI	GGYRCC	1 cut(s)	398
BsiEI	CGRYCG	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	537
BsiSI	CCGG	1 cut(s)	396
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	2 cut(s)	50, 721
BsmAI	GTCTC	2 cut(s)	213, 297
BsmBI	CGTCTC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	2 cut(s)	27, 54
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp143I	GATC	3 cut(s)	112, 310, 742
BspACI	CCGC	3 cut(s)	49, 51, 55
BspANI	GGCC	2 cut(s)	27, 54
BspCNI	CTCAG	4 cut(s)	25, 517, 691, 782
BspFNI	CGCG	1 cut(s)	51
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	3 cut(s)	339, 400, 562
BspMAI	CTGCAG	1 cut(s)	720
BspPI	GGATC	2 cut(s)	107, 737
BspT107I	GGYRCC	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	478
BsrFI	RCCGGY	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	610
BssAI	RCCGGY	1 cut(s)	395
BssECI	CCNNGG	4 cut(s)	22, 49, 265, 877
BssMI	GATC	3 cut(s)	112, 310, 742
Bst6I	CTCTTC	1 cut(s)	176
BstC8I	GCNNGC	3 cut(s)	684, 716, 874
BstDEI	CTNAG	4 cut(s)	12, 525, 678, 769
BstDSI	CCRYGG	2 cut(s)	49, 877
BstF5I	GGATG	2 cut(s)	242, 924
BstFNI	CGCG	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	715
BstHHI	GCGC	2 cut(s)	487, 714
BstKTI	GATC	3 cut(s)	115, 313, 745
BstMAI	GTCTC	2 cut(s)	213, 297
BstMBI	GATC	3 cut(s)	112, 310, 742
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 491
BstNSI	RCATGY	1 cut(s)	690
BstSFI	CTRYAG	3 cut(s)	382, 441, 716
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	6 cut(s)	463, 480, 506, 605, 856, 868
BstV2I	GAAGAC	2 cut(s)	97, 398
BstZI	CGGCCG	1 cut(s)	52
BsuI	GTATCC	1 cut(s)	718
BsuRI	GGCC	2 cut(s)	27, 54
BtgI	CCRYGG	2 cut(s)	49, 877
BtsCI	GGATG	2 cut(s)	242, 924
BtsIMutI	CAGTG	2 cut(s)	522, 777
Cac8I	GCNNGC	3 cut(s)	684, 716, 874
CciI	TCATGA	1 cut(s)	232
CciNI	GCGGCCGC	1 cut(s)	52
CfoI	GCGC	2 cut(s)	487, 714
Cfr10I	RCCGGY	1 cut(s)	395
Cfr13I	GGNCC	1 cut(s)	26
Cfr42I	CCGCGG	1 cut(s)	52
Csp6I	GTAC	4 cut(s)	109, 603, 644, 863
CviAII	CATG	5 cut(s)	76, 233, 254, 687, 901
CviQI	GTAC	4 cut(s)	109, 603, 644, 863
DdeI	CTNAG	4 cut(s)	12, 525, 678, 769
DpnI	GATC	3 cut(s)	114, 312, 744
DpnII	GATC	3 cut(s)	112, 310, 742
DraI	TTTAAA	1 cut(s)	750
EaeI	YGGCCR	1 cut(s)	52
EagI	CGGCCG	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
Ecl136II	GAGCTC	1 cut(s)	535
EclXI	CGGCCG	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	537
Eco52I	CGGCCG	1 cut(s)	52
Eco53kI	GAGCTC	1 cut(s)	535
Eco57I	CTGAAG	1 cut(s)	720
EcoICRI	GAGCTC	1 cut(s)	535
EcoT38I	GRGCYC	1 cut(s)	537
Esp3I	CGTCTC	1 cut(s)	213
FaeI	CATG	5 cut(s)	79, 236, 257, 690, 904
FaiI	YATR	8 cut(s)	77, 234, 255, 490, 671, 688, 888, 902
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	5 cut(s)	75, 232, 253, 686, 900
FblI	GTMKAC	1 cut(s)	320
Fnu4HI	GCNGC	8 cut(s)	52, 55, 469, 477, 495, 594, 857, 870
FokI	GGATG	1 cut(s)	229
FriOI	GRGCYC	1 cut(s)	537
Fsp4HI	GCNGC	8 cut(s)	52, 55, 469, 477, 495, 594, 857, 870
FspBI	CTAG	1 cut(s)	30
GlaI	GCGC	2 cut(s)	486, 713
GluI	GCNGC	8 cut(s)	52, 55, 469, 477, 495, 594, 857, 870
GsuI	CTGGAG	1 cut(s)	801
HaeII	RGCGCY	1 cut(s)	715
HaeIII	GGCC	2 cut(s)	27, 54
HapII	CCGG	1 cut(s)	396
HhaI	GCGC	2 cut(s)	487, 714
Hin1II	CATG	5 cut(s)	79, 236, 257, 690, 904
Hin6I	GCGC	2 cut(s)	485, 712
HinP1I	GCGC	2 cut(s)	485, 712
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HinfI	GANTC	3 cut(s)	204, 418, 765
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	1 cut(s)	626
Hpy166II	GTNNAC	4 cut(s)	109, 321, 706, 881
Hpy188I	TCNGA	3 cut(s)	269, 565, 660
Hpy188III	TCNNGA	6 cut(s)	116, 199, 233, 425, 788, 906
Hpy8I	GTNNAC	4 cut(s)	109, 321, 706, 881
HpyAV	CCTTC	3 cut(s)	306, 523, 583
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	5 cut(s)	183, 479, 593, 718, 798
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 491
HpyF3I	CTNAG	4 cut(s)	12, 525, 678, 769
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	5 cut(s)	79, 236, 257, 690, 904
HspAI	GCGC	2 cut(s)	485, 712
KspI	CCGCGG	1 cut(s)	52
Kzo9I	GATC	3 cut(s)	112, 310, 742
LmnI	GCTCC	3 cut(s)	446, 532, 540
Lsp1109I	GCAGC	6 cut(s)	463, 480, 506, 605, 856, 868
LweI	GCATC	3 cut(s)	251, 807, 880
MaeI	CTAG	1 cut(s)	30
MaeII	ACGT	1 cut(s)	64
MalI	GATC	3 cut(s)	114, 312, 744
MboI	GATC	3 cut(s)	112, 310, 742
MboII	GAAGA	4 cut(s)	102, 163, 400, 403
MhlI	GDGCHC	1 cut(s)	537
MluCI	AATT	3 cut(s)	355, 406, 752
MmeI	TCCRAC	1 cut(s)	702
MnlI	CCTC	9 cut(s)	32, 145, 179, 257, 275, 645, 687, 825, 847
MseI	TTAA	5 cut(s)	189, 279, 375, 749, 843
MslI	CAYNNNNRTG	1 cut(s)	659
MspA1I	CMGCKG	2 cut(s)	51, 698
MspI	CCGG	1 cut(s)	396
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	482, 491
NdeII	GATC	3 cut(s)	112, 310, 742
NlaIII	CATG	5 cut(s)	79, 236, 257, 690, 904
NlaIV	GGNNCC	3 cut(s)	339, 400, 562
NotI	GCGGCCGC	1 cut(s)	52
NspI	RCATGY	1 cut(s)	690
PagI	TCATGA	1 cut(s)	232
PfeI	GAWTC	3 cut(s)	204, 418, 765
PkrI	GCNGC	8 cut(s)	53, 56, 470, 478, 496, 595, 858, 871
PshBI	ATTAAT	1 cut(s)	189
PsiI	TTATAA	1 cut(s)	671
Psp124BI	GAGCTC	1 cut(s)	537
PspN4I	GGNNCC	3 cut(s)	339, 400, 562
PspPI	GGNCC	1 cut(s)	26
PsrI	GAACNNNNNNTAC	2 cut(s)	321, 353
PstI	CTGCAG	1 cut(s)	720
PvuII	CAGCTG	1 cut(s)	698
RsaI	GTAC	4 cut(s)	110, 604, 645, 864
RsaNI	GTAC	4 cut(s)	109, 603, 644, 863
RseI	CAYNNNNRTG	1 cut(s)	659
SacI	GAGCTC	1 cut(s)	537
SacII	CCGCGG	1 cut(s)	52
SalI	GTCGAC	1 cut(s)	319
SaqAI	TTAA	5 cut(s)	189, 279, 375, 749, 843
SatI	GCNGC	8 cut(s)	52, 55, 469, 477, 495, 594, 857, 870
Sau3AI	GATC	3 cut(s)	112, 310, 742
Sau96I	GGNCC	1 cut(s)	26
ScaI	AGTACT	1 cut(s)	864
SduI	GDGCHC	1 cut(s)	537
SetI	ASST	8 cut(s)	67, 150, 156, 537, 592, 643, 700, 817
SfaNI	GCATC	3 cut(s)	251, 807, 880
SfcI	CTRYAG	3 cut(s)	382, 441, 716
Sfr303I	CCGCGG	1 cut(s)	52
SgrBI	CCGCGG	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	659
SmlI	CTYRAG	3 cut(s)	199, 585, 786
SmoI	CTYRAG	3 cut(s)	199, 585, 786
Sse9I	AATT	3 cut(s)	355, 406, 752
SsiI	CCGC	3 cut(s)	49, 51, 55
SspI	AATATT	1 cut(s)	631
SspMI	CTAG	1 cut(s)	30
SstI	GAGCTC	1 cut(s)	537
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	3 cut(s)	320, 426, 548
TasI	AATT	3 cut(s)	355, 406, 752
TatI	WGTACW	2 cut(s)	602, 862
TauI	GCSGC	2 cut(s)	54, 57
TfiI	GAWTC	3 cut(s)	204, 418, 765
Tru1I	TTAA	5 cut(s)	189, 279, 375, 749, 843
Tru9I	TTAA	5 cut(s)	189, 279, 375, 749, 843
TscAI	CASTG	2 cut(s)	529, 777
TseI	GCWGC	6 cut(s)	468, 476, 494, 593, 856, 869
TspDTI	ATGAA	5 cut(s)	135, 221, 242, 410, 889
TspRI	CASTG	2 cut(s)	529, 777
VspI	ATTAAT	1 cut(s)	189
XapI	RAATTY	1 cut(s)	355
XceI	RCATGY	1 cut(s)	690
XmiI	GTMKAC	1 cut(s)	320
XspI	CTAG	1 cut(s)	30
ZrmI	AGTACT	1 cut(s)	864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.