Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005876

Physical Location & Seq

Genomic Coordinates Reverse (-)

23087516 .. 23091560

Gene Structure 4045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00235880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCCTAGATTCATCTTGATAAGAAAGTGCCTACCGGAGCAGGACTTGGTGGTGGAAGCAGCAATGCTGCAACCGCACTATGGGCAGCAAATCAGTTTAATGGTTGTCTTGCCACTAAGAAGGAGCTCCAAGAATGGTCGAGTGAGATTGGTTCAGATGTTCCCTTCTTTTTCTCTCAAGGTGCAGCCTATTGTACTGGTCGTGGTGAGCCTCAGCAGGCATGTTCAACAAATCGAAGTTTACAAGCGCCTGCAGTTGGATACAACTAGTAGTGTTGATCCTTTAAAATTGCTGGAAAGAATCTCGGTGAATGGAATATCGCAAGATGTTTGCATCAATGATTTAGAACCTCCAGCATTTCAAGTTCTTCCATCTCTTAAAAGATTGAAGCACCGAGTACTTGCTGCTAGCCGTGGAGAATATGATGCTGTTTTCATGTCCGGAAATGGAAGCACTATTGTTGGGATTGGTTCTCCAGATCCTCCTCGACGTCTCCGCCTAAAAACAAGTGCTCCATTGTACCATCGCTTCTCTTGGTTCCAGCCGCAACTCGTCTCCGACCTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009509 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050515

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

189

Amino Acids

21.4

Weight (kDa)

10.13

Isoelectric Point (pI)

57.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26930
fragaria_vesca	FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650
malus_domestica	MD03G1163100.v1.1
prunus_persica	Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1
pyrus_communis	pycom5153684g00180
rosa_chinensis	RchiOBHm_Chr5g0050131
rosa_laevigata	RLG00000034688
rosa_multiflora	Rmu_sc0002289.1_g000014 Rmu_sc0002289.1_g000015
rosa_roxburghii	Rroxscaffold_1G00030810 Rroxscaffold_3G00235880 Rroxscaffold_3G00235890 Rroxscaffold_3G00235900
rosa_rugosa	Rorug05G0259000
rosa_samantha	Rh5AG330800 Rh5BG341500 Rh5CG368000 Rh5DG354300
rosa_wichuraiana	Rw5G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	493
AccIII	TCCGGA	1 cut(s)	440
AciI	CCGC	3 cut(s)	74, 496, 545
AclWI	GGATC	2 cut(s)	272, 473
AcyI	GRCGYC	1 cut(s)	490
AfaI	GTAC	3 cut(s)	195, 399, 521
AfiI	CCNNNNNNNGG	2 cut(s)	80, 256
AgsI	TTSAA	3 cut(s)	227, 362, 388
AhlI	ACTAGT	1 cut(s)	266
AluBI	AGCT	1 cut(s)	126
AluI	AGCT	1 cut(s)	126
Alw21I	GWGCWC	2 cut(s)	128, 514
Alw26I	GTCTC	2 cut(s)	497, 559
AlwI	GGATC	2 cut(s)	272, 473
Aor13HI	TCCGGA	1 cut(s)	440
ApeKI	GCWGC	5 cut(s)	59, 67, 85, 184, 404
AspLEI	GCGC	1 cut(s)	249
AsuHPI	GGTGA	2 cut(s)	217, 319
AsuNHI	GCTAGC	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	128
BarI	GAAGNNNNNNTAC	2 cut(s)	512, 544
Bbv12I	GWGCWC	2 cut(s)	128, 514
BbvCI	CCTCAGC	1 cut(s)	212
BbvI	GCAGC	5 cut(s)	54, 71, 97, 196, 391
BccI	CCATC	2 cut(s)	379, 531
BceAI	ACGGC	1 cut(s)	396
BciVI	GTATCC	1 cut(s)	253
BcoDI	GTCTC	2 cut(s)	497, 559
BcuI	ACTAGT	1 cut(s)	266
BfaI	CTAG	3 cut(s)	6, 267, 408
BfmI	CTRYAG	1 cut(s)	251
BfoI	RGCGCY	1 cut(s)	250
BfuI	GTATCC	1 cut(s)	253
BisI	GCNGC	6 cut(s)	60, 68, 86, 185, 405, 545
BlsI	GCNGC	6 cut(s)	61, 69, 87, 186, 406, 546
BmcAI	AGTACT	1 cut(s)	399
BmiI	GGNNCC	1 cut(s)	539
BmsI	GCATC	2 cut(s)	342, 415
BmtI	GCTAGC	1 cut(s)	411
BpmI	CTGGAG	2 cut(s)	336, 459
Bpu10I	CCTNAGC	1 cut(s)	212
BpuEI	CTTGAG	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	490
BsaJI	CCNNGG	1 cut(s)	412
BsaWI	WCCGGW	2 cut(s)	34, 440
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 256
Bse1I	ACTGG	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	69
BseAI	TCCGGA	1 cut(s)	440
BseDI	CCNNGG	1 cut(s)	412
BseLI	CCNNNNNNNGG	2 cut(s)	80, 256
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	226
BseNI	ACTGG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	474
BseXI	GCAGC	5 cut(s)	54, 71, 97, 196, 391
BsgI	GTGCAG	1 cut(s)	203
BsiHKAI	GWGCWC	2 cut(s)	128, 514
BsiSI	CCGG	2 cut(s)	35, 441
BslI	CCNNNNNNNGG	2 cut(s)	80, 256
BsmAI	GTCTC	2 cut(s)	497, 559
BsmBI	CGTCTC	2 cut(s)	497, 559
Bsp1286I	GDGCHC	2 cut(s)	128, 514
Bsp13I	TCCGGA	1 cut(s)	440
Bsp143I	GATC	2 cut(s)	277, 478
BspACI	CCGC	3 cut(s)	74, 496, 545
BspCNI	CTCAG	1 cut(s)	225
BspEI	TCCGGA	1 cut(s)	440
BspLI	GGNNCC	1 cut(s)	539
BspMAI	CTGCAG	1 cut(s)	255
BspOI	GCTAGC	1 cut(s)	411
BspPI	GGATC	2 cut(s)	272, 473
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	2 cut(s)	277, 478
BssNI	GRCGYC	1 cut(s)	490
BstACI	GRCGYC	1 cut(s)	490
BstC8I	GCNNGC	3 cut(s)	218, 251, 409
BstDEI	CTNAG	2 cut(s)	116, 212
BstDSI	CCRYGG	1 cut(s)	412
BstH2I	RGCGCY	1 cut(s)	250
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	2 cut(s)	280, 481
BstMAI	GTCTC	2 cut(s)	497, 559
BstMBI	GATC	2 cut(s)	277, 478
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 82
BstNSI	RCATGY	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	251
BstV1I	GCAGC	5 cut(s)	54, 71, 97, 196, 391
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
BsuI	GTATCC	1 cut(s)	253
BtgI	CCRYGG	1 cut(s)	412
BtgZI	GCGATG	1 cut(s)	509
Cac8I	GCNNGC	3 cut(s)	218, 251, 409
CfoI	GCGC	1 cut(s)	249
Csp6I	GTAC	3 cut(s)	194, 398, 520
CviAII	CATG	2 cut(s)	221, 436
CviJI	RGCY	5 cut(s)	126, 187, 210, 411, 544
CviKI_1	RGCY	5 cut(s)	126, 187, 210, 411, 544
CviQI	GTAC	3 cut(s)	194, 398, 520
DdeI	CTNAG	2 cut(s)	116, 212
DpnI	GATC	2 cut(s)	279, 480
DpnII	GATC	2 cut(s)	277, 478
DraI	TTTAAA	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	485
Ecl136II	GAGCTC	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	128
Eco53kI	GAGCTC	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	128
Esp3I	CGTCTC	2 cut(s)	497, 559
FaeI	CATG	2 cut(s)	224, 439
FaiI	YATR	4 cut(s)	81, 222, 423, 437
FatI	CATG	2 cut(s)	220, 435
Fnu4HI	GCNGC	6 cut(s)	60, 68, 86, 185, 405, 545
FriOI	GRGCYC	1 cut(s)	128
Fsp4HI	GCNGC	6 cut(s)	60, 68, 86, 185, 405, 545
FspBI	CTAG	3 cut(s)	6, 267, 408
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	6 cut(s)	60, 68, 86, 185, 405, 545
GsuI	CTGGAG	2 cut(s)	336, 459
HaeII	RGCGCY	1 cut(s)	250
HapII	CCGG	2 cut(s)	35, 441
HhaI	GCGC	1 cut(s)	249
Hin1I	GRCGYC	1 cut(s)	490
Hin1II	CATG	2 cut(s)	224, 439
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HinfI	GANTC	2 cut(s)	9, 300
HpaII	CCGG	2 cut(s)	35, 441
HphI	GGTGA	2 cut(s)	217, 319
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	2 cut(s)	156, 559
Hpy188III	TCNNGA	3 cut(s)	16, 441, 476
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	1 cut(s)	492
HpyAV	CCTTC	2 cut(s)	114, 174
HpyCH4IV	ACGT	1 cut(s)	490
HpyCH4V	TGCA	4 cut(s)	70, 184, 253, 333
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 82
HpyF3I	CTNAG	2 cut(s)	116, 212
HpySE526I	ACGT	1 cut(s)	490
Hsp92I	GRCGYC	1 cut(s)	490
Hsp92II	CATG	2 cut(s)	224, 439
HspAI	GCGC	1 cut(s)	247
Kpn2I	TCCGGA	1 cut(s)	440
Kzo9I	GATC	2 cut(s)	277, 478
LmnI	GCTCC	4 cut(s)	37, 123, 131, 517
Lsp1109I	GCAGC	5 cut(s)	54, 71, 97, 196, 391
LweI	GCATC	2 cut(s)	342, 415
MaeI	CTAG	3 cut(s)	6, 267, 408
MaeII	ACGT	1 cut(s)	490
MalI	GATC	2 cut(s)	279, 480
MboI	GATC	2 cut(s)	277, 478
MboII	GAAGA	1 cut(s)	359
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	2 cut(s)	128, 514
MluCI	AATT	1 cut(s)	287
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	4 cut(s)	221, 360, 492, 495
MroI	TCCGGA	1 cut(s)	440
MseI	TTAA	3 cut(s)	98, 284, 378
MspI	CCGG	2 cut(s)	35, 441
MwoI	GCNNNNNNNGC	2 cut(s)	73, 82
NdeII	GATC	2 cut(s)	277, 478
NheI	GCTAGC	1 cut(s)	407
NlaIII	CATG	2 cut(s)	224, 439
NlaIV	GGNNCC	1 cut(s)	539
NspI	RCATGY	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	9, 300
PkrI	GCNGC	6 cut(s)	61, 69, 87, 186, 406, 546
Psp124BI	GAGCTC	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	539
PstI	CTGCAG	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	478
RsaI	GTAC	3 cut(s)	195, 399, 521
RsaNI	GTAC	3 cut(s)	194, 398, 520
SacI	GAGCTC	1 cut(s)	128
SaqAI	TTAA	3 cut(s)	98, 284, 378
SatI	GCNGC	6 cut(s)	60, 68, 86, 185, 405, 545
Sau3AI	GATC	2 cut(s)	277, 478
ScaI	AGTACT	1 cut(s)	399
SduI	GDGCHC	2 cut(s)	128, 514
SetI	ASST	5 cut(s)	128, 183, 352, 493, 564
SfaNI	GCATC	2 cut(s)	342, 415
SfcI	CTRYAG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SpeI	ACTAGT	1 cut(s)	266
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	3 cut(s)	74, 496, 545
SspMI	CTAG	3 cut(s)	6, 267, 408
SstI	GAGCTC	1 cut(s)	128
TaiI	ACGT	1 cut(s)	493
TaqI	TCGA	3 cut(s)	139, 234, 487
TasI	AATT	1 cut(s)	287
TatI	WGTACW	2 cut(s)	193, 397
TauI	GCSGC	1 cut(s)	547
TfiI	GAWTC	2 cut(s)	9, 300
Tru1I	TTAA	3 cut(s)	98, 284, 378
Tru9I	TTAA	3 cut(s)	98, 284, 378
TseI	GCWGC	5 cut(s)	59, 67, 85, 184, 404
TspDTI	ATGAA	1 cut(s)	424
XceI	RCATGY	1 cut(s)	224
XspI	CTAG	3 cut(s)	6, 267, 408
ZraI	GACGTC	1 cut(s)	491
ZrmI	AGTACT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.