Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0005876

Physical Location & Seq

Genomic Coordinates Forward (+)

20304303 .. 20310148

Gene Structure 5846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1163100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGACCATGGCCATTGCTTCCTCTCGTTTGCTCTGCCAGAACCCTCCTCCTACCTTCCTCATAAATTCCCCCAATTTCGTCGGAAATAGCGGCAGTAGCAGCAGCCTCAGGCTCTCTTGGCTCAGGTCACAGTCGCATAGGTGCTCTTTTTCTCACTCAAAGTCTGGAAATCAAAGGACCCCCAAATTTGCCAGAAAACAAGTAGAGATAGTGTATGATCCTGATGAAAGGATAAACAAGTTGGCAGATGAGGTTGACGAGAAGGCCGCTCCGGTTTCAAGGCTCACCCTTTTCTCCCCTTGCAAGATAAATGTTTTCTTGAGAATAACTGGCAAAAGGGAAGATGGGTTTCATGATTTGGCATCTCTCTTTCATGTAATAAGTCTTGGAGATGTAATTAAGTTCTCTTTGTCACCCTCAAAAACTAAGGATCGTCTTTCGACCAATGTGTCTGGGGTGCCCCTTGATGATAGAAATTTGATTATTAAGGCCCTTAATCTCTACAGGAAGAAGACAGGTAGCAACAATTTCTTTTGGATTCATCTTGATAAGAAGGTGCCAACAGGAGCAGGGCTTGGTGGTGGAAGCAGCAATGCTGCAACTGCACTATGGGCAGCAAATCAGTTTAGTGGTCTTCTTGCCACTGAGAAGGAACTCCAAGAATGGTCGAGTGAGATTGGTTCAGATGTTCCCTTCTTTTTCTCTCAAGGAGCAGCCTATTGTACTGGTCGGGGTGAGGTTGTTCAAAATATTAGTCCAGCCTTACCATTGGACATTCCAATGGTTCTTATAAAGCCCCAACAGGCATGTTCGACAGCTGAAGTTTACAAGCGCCTCCAATTGGATAAAACTAATAAGGCTGATCCTTTAACACTGCTGGAGAGAATCTCAAGGCATGGAATATCACAAGATGTTTGCATAAATGATTTAGAACCTCCAGCATTTGATGTTCTTCCATCTCTTAAAAGATTAAAGCAGCGAGTACTTGCCGCAAGCCGTGGACAATATGACGCTGTTTTTATGTCTGGAAGTGGAAGCACTATTGTTGGGATTGGTTCTCCAGACCCTCCCCAATTTGTATATGACGACGATGAATACAAGGATGTATTTTTGTCAGAGGCGAACTTTCTGACACGTGAAGAAAATAACTGGTATACGGAACCTGCTTCGAGAAGTGCTTCTGGCTCATCCTCCCAATTTTCCGGGTCGATTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009509 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050515

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

406

Amino Acids

44.49

Weight (kDa)

8.13

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	159 - 236	1.9e-14	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26930
fragaria_vesca	FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650
malus_domestica	MD03G1163100.v1.1
prunus_persica	Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1
pyrus_communis	pycom5153684g00180
rosa_chinensis	RchiOBHm_Chr5g0050131
rosa_laevigata	RLG00000034688
rosa_multiflora	Rmu_sc0002289.1_g000014 Rmu_sc0002289.1_g000015
rosa_roxburghii	Rroxscaffold_1G00030810 Rroxscaffold_3G00235880 Rroxscaffold_3G00235890 Rroxscaffold_3G00235900
rosa_rugosa	Rorug05G0259000
rosa_samantha	Rh5AG330800 Rh5BG341500 Rh5CG368000 Rh5DG354300
rosa_wichuraiana	Rw5G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	791
AasI	GACNNNNNNGTC	1 cut(s)	448
Acc36I	ACCTGC	1 cut(s)	1171
AccB1I	GGYRCC	2 cut(s)	457, 556
AccBSI	CCGCTC	1 cut(s)	269
AccI	GTMKAC	1 cut(s)	1154
AciI	CCGC	3 cut(s)	90, 267, 990
AclWI	GGATC	3 cut(s)	212, 438, 857
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	3 cut(s)	64, 185, 475
AcuI	CTGAAG	1 cut(s)	840
AcvI	CACGTG	1 cut(s)	1136
AfaI	GTAC	2 cut(s)	724, 984
AfiI	CCNNNNNNNGG	1 cut(s)	841
AflIII	ACRYGT	1 cut(s)	1133
AgsI	TTSAA	2 cut(s)	279, 746
AluBI	AGCT	1 cut(s)	818
AluI	AGCT	1 cut(s)	818
Alw21I	GWGCWC	1 cut(s)	146
AlwI	GGATC	3 cut(s)	212, 438, 857
AoxI	GGCC	3 cut(s)	9, 264, 489
ApeKI	GCWGC	7 cut(s)	99, 102, 588, 596, 614, 713, 976
ApoI	RAATTY	3 cut(s)	64, 185, 475
ArsI	GACNNNNNNTTYG	2 cut(s)	739, 771
Asp700I	GAANNNNTTC	1 cut(s)	1177
AspLEI	GCGC	1 cut(s)	834
AspS9I	GGNCC	2 cut(s)	177, 490
AsuC2I	CCSGG	1 cut(s)	1204
AsuHPI	GGTGA	3 cut(s)	277, 405, 746
AvaII	GGWCC	1 cut(s)	177
AxyI	CCTNAGG	1 cut(s)	107
BaeGI	GKGCMC	1 cut(s)	462
BalI	TGGCCA	1 cut(s)	11
BanI	GGYRCC	2 cut(s)	457, 556
BbrPI	CACGTG	1 cut(s)	1136
BbsI	GAAGAC	2 cut(s)	518, 626
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	7 cut(s)	111, 114, 583, 600, 626, 725, 988
BccI	CCATC	2 cut(s)	338, 964
BceAI	ACGGC	1 cut(s)	981
BcnI	CCSGG	1 cut(s)	1204
BfmI	CTRYAG	1 cut(s)	502
BfoI	RGCGCY	1 cut(s)	835
BfuAI	ACCTGC	1 cut(s)	1171
BmcAI	AGTACT	1 cut(s)	984
Bme1390I	CCNGG	1 cut(s)	1204
Bme18I	GGWCC	1 cut(s)	177
BmgT120I	GGNCC	2 cut(s)	177, 490
BmiI	GGNNCC	4 cut(s)	179, 459, 558, 1161
BmrFI	CCNGG	1 cut(s)	1204
BmsI	GCATC	1 cut(s)	371
BpiI	GAAGAC	2 cut(s)	518, 626
BplI	GAGNNNNNCTC	2 cut(s)	872, 904
BpmI	CTGGAG	3 cut(s)	899, 921, 1044
Bpu10I	CCTNAGC	1 cut(s)	122
BpuEI	CTTGAG	3 cut(s)	340, 690, 874
BpuMI	CCSGG	1 cut(s)	1204
BsaAI	YACGTR	1 cut(s)	1136
BsaJI	CCNNGG	2 cut(s)	6, 997
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	1 cut(s)	841
Bse1I	ACTGG	3 cut(s)	334, 730, 1154
Bse21I	CCTNAGG	1 cut(s)	107
Bse3DI	GCAATG	2 cut(s)	12, 598
BseDI	CCNNGG	2 cut(s)	6, 997
BseGI	GGATG	2 cut(s)	1108, 1187
BseLI	CCNNNNNNNGG	1 cut(s)	841
BseMI	GCAATG	2 cut(s)	12, 598
BseMII	CTCAG	3 cut(s)	121, 136, 636
BseNI	ACTGG	3 cut(s)	334, 730, 1154
BseRI	GAGGAG	1 cut(s)	36
BseSI	GKGCMC	1 cut(s)	462
BseXI	GCAGC	7 cut(s)	111, 114, 583, 600, 626, 725, 988
BsgI	GTGCAG	1 cut(s)	588
BshFI	GGCC	3 cut(s)	11, 266, 491
BshNI	GGYRCC	2 cut(s)	457, 556
BsiHKAI	GWGCWC	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	272, 1203
BslI	CCNNNNNNNGG	1 cut(s)	841
BsnI	GGCC	3 cut(s)	11, 266, 491
Bsp1286I	GDGCHC	2 cut(s)	146, 462
Bsp143I	GATC	3 cut(s)	217, 430, 862
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	3 cut(s)	90, 267, 990
BspANI	GGCC	3 cut(s)	11, 266, 491
BspCNI	CTCAG	3 cut(s)	120, 135, 637
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	4 cut(s)	179, 459, 558, 1161
BspMI	ACCTGC	1 cut(s)	1171
BspPI	GGATC	3 cut(s)	212, 438, 857
BspT107I	GGYRCC	2 cut(s)	457, 556
BsrBI	CCGCTC	1 cut(s)	269
BsrDI	GCAATG	2 cut(s)	12, 598
BsrI	ACTGG	3 cut(s)	334, 730, 1154
BssECI	CCNNGG	2 cut(s)	6, 997
BssMI	GATC	3 cut(s)	217, 430, 862
BssNAI	GTATAC	1 cut(s)	1155
BssT1I	CCWWGG	1 cut(s)	6
Bst1107I	GTATAC	1 cut(s)	1155
Bst4CI	ACNGT	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	1136
BstC8I	GCNNGC	1 cut(s)	994
BstDEI	CTNAG	4 cut(s)	107, 122, 426, 645
BstDSI	CCRYGG	2 cut(s)	6, 997
BstF5I	GGATG	2 cut(s)	1108, 1187
BstH2I	RGCGCY	1 cut(s)	835
BstHHI	GCGC	1 cut(s)	834
BstKTI	GATC	3 cut(s)	220, 433, 865
BstMBI	GATC	3 cut(s)	217, 430, 862
BstMWI	GCNNNNNNNGC	5 cut(s)	96, 99, 118, 602, 611
BstNSI	RCATGY	1 cut(s)	810
BstSCI	CCNGG	1 cut(s)	1202
BstSFI	CTRYAG	1 cut(s)	502
BstSLI	GKGCMC	1 cut(s)	462
BstV1I	GCAGC	7 cut(s)	111, 114, 583, 600, 626, 725, 988
BstV2I	GAAGAC	2 cut(s)	518, 626
BstZ17I	GTATAC	1 cut(s)	1155
Bsu36I	CCTNAGG	1 cut(s)	107
BsuRI	GGCC	3 cut(s)	11, 266, 491
BtgI	CCRYGG	2 cut(s)	6, 997
BtsCI	GGATG	2 cut(s)	1108, 1187
BtsI	GCAGTG	1 cut(s)	872
BtsIMutI	CAGTG	2 cut(s)	642, 872
BveI	ACCTGC	1 cut(s)	1171
Cac8I	GCNNGC	1 cut(s)	994
CciI	TCATGA	1 cut(s)	352
CfoI	GCGC	1 cut(s)	834
Cfr13I	GGNCC	2 cut(s)	177, 490
CseI	GACGC	1 cut(s)	1019
Csp6I	GTAC	2 cut(s)	723, 983
CviAII	CATG	5 cut(s)	7, 353, 374, 807, 896
CviQI	GTAC	2 cut(s)	723, 983
DdeI	CTNAG	4 cut(s)	107, 122, 426, 645
DpnI	GATC	3 cut(s)	219, 432, 864
DpnII	GATC	3 cut(s)	217, 430, 862
DrdI	GACNNNNNNGTC	1 cut(s)	448
DseDI	GACNNNNNNGTC	1 cut(s)	448
EaeI	YGGCCR	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	840
Eco72I	CACGTG	1 cut(s)	1136
Eco81I	CCTNAGG	1 cut(s)	107
EcoO109I	RGGNCCY	2 cut(s)	177, 490
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	5 cut(s)	10, 356, 377, 810, 899
FatI	CATG	5 cut(s)	6, 352, 373, 806, 895
FblI	GTMKAC	1 cut(s)	1154
FokI	GGATG	2 cut(s)	1115, 1174
GlaI	GCGC	1 cut(s)	833
GsuI	CTGGAG	3 cut(s)	899, 921, 1044
HaeII	RGCGCY	1 cut(s)	835
HaeIII	GGCC	3 cut(s)	11, 266, 491
HapII	CCGG	2 cut(s)	272, 1203
HgaI	GACGC	1 cut(s)	1019
HhaI	GCGC	1 cut(s)	834
Hin1II	CATG	5 cut(s)	10, 356, 377, 810, 899
Hin6I	GCGC	1 cut(s)	832
HinP1I	GCGC	1 cut(s)	832
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	2 cut(s)	538, 885
HpaII	CCGG	2 cut(s)	272, 1203
HphI	GGTGA	3 cut(s)	277, 405, 746
Hpy166II	GTNNAC	4 cut(s)	256, 826, 1001, 1155
Hpy188I	TCNGA	4 cut(s)	83, 685, 1117, 1131
Hpy188III	TCNNGA	8 cut(s)	165, 221, 319, 353, 545, 1026, 1061, 1170
Hpy8I	GTNNAC	4 cut(s)	256, 826, 1001, 1155
Hpy99I	CGWCG	2 cut(s)	83, 1091
HpyAV	CCTTC	5 cut(s)	64, 256, 547, 643, 703
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4IV	ACGT	1 cut(s)	1135
HpyCH4V	TGCA	4 cut(s)	303, 599, 605, 918
HpyF10VI	GCNNNNNNNGC	5 cut(s)	96, 99, 118, 602, 611
HpyF3I	CTNAG	4 cut(s)	107, 122, 426, 645
HpySE526I	ACGT	1 cut(s)	1135
Hsp92II	CATG	5 cut(s)	10, 356, 377, 810, 899
HspAI	GCGC	1 cut(s)	832
Kzo9I	GATC	3 cut(s)	217, 430, 862
LmnI	GCTCC	3 cut(s)	274, 566, 710
Lsp1109I	GCAGC	7 cut(s)	111, 114, 583, 600, 626, 725, 988
LweI	GCATC	1 cut(s)	371
MaeII	ACGT	1 cut(s)	1135
MaeIII	GTNAC	2 cut(s)	126, 411
MalI	GATC	3 cut(s)	219, 432, 864
MbiI	CCGCTC	1 cut(s)	269
MboI	GATC	3 cut(s)	217, 430, 862
MboII	GAAGA	6 cut(s)	353, 520, 523, 626, 944, 1151
MfeI	CAATTG	1 cut(s)	839
MhlI	GDGCHC	2 cut(s)	146, 462
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	9 cut(s)	64, 73, 185, 396, 475, 526, 839, 1073, 1196
MluNI	TGGCCA	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	61
Mox20I	TGGCCA	1 cut(s)	11
MroXI	GAANNNNTTC	1 cut(s)	1177
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	6 cut(s)	399, 486, 495, 869, 963, 971
MslI	CAYNNNNRTG	1 cut(s)	779
Msp20I	TGGCCA	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	818
MspI	CCGG	2 cut(s)	272, 1203
MspR9I	CCNGG	1 cut(s)	1204
MunI	CAATTG	1 cut(s)	839
MwoI	GCNNNNNNNGC	5 cut(s)	96, 99, 118, 602, 611
NciI	CCSGG	1 cut(s)	1204
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	3 cut(s)	217, 430, 862
NlaIII	CATG	5 cut(s)	10, 356, 377, 810, 899
NlaIV	GGNNCC	4 cut(s)	179, 459, 558, 1161
NmuCI	GTSAC	2 cut(s)	126, 411
NspI	RCATGY	1 cut(s)	810
PagI	TCATGA	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	1177
PfeI	GAWTC	2 cut(s)	538, 885
PmaCI	CACGTG	1 cut(s)	1136
PmlI	CACGTG	1 cut(s)	1136
Ppu21I	YACGTR	1 cut(s)	1136
PpuMI	RGGWCCY	1 cut(s)	177
PsiI	TTATAA	1 cut(s)	791
Psp5II	RGGWCCY	1 cut(s)	177
PspCI	CACGTG	1 cut(s)	1136
PspN4I	GGNNCC	4 cut(s)	179, 459, 558, 1161
PspPI	GGNCC	2 cut(s)	177, 490
PspPPI	RGGWCCY	1 cut(s)	177
PvuII	CAGCTG	1 cut(s)	818
RsaI	GTAC	2 cut(s)	724, 984
RsaNI	GTAC	2 cut(s)	723, 983
RseI	CAYNNNNRTG	1 cut(s)	779
SaqAI	TTAA	6 cut(s)	399, 486, 495, 869, 963, 971
Sau3AI	GATC	3 cut(s)	217, 430, 862
Sau96I	GGNCC	2 cut(s)	177, 490
ScaI	AGTACT	1 cut(s)	984
ScrFI	CCNGG	1 cut(s)	1204
SduI	GDGCHC	2 cut(s)	146, 462
SfaNI	GCATC	1 cut(s)	371
SfcI	CTRYAG	1 cut(s)	502
SinI	GGWCC	1 cut(s)	177
SmiMI	CAYNNNNRTG	1 cut(s)	779
SmlI	CTYRAG	3 cut(s)	319, 705, 889
SmoI	CTYRAG	3 cut(s)	319, 705, 889
Sse9I	AATT	9 cut(s)	64, 73, 185, 396, 475, 526, 839, 1073, 1196
SsiI	CCGC	3 cut(s)	90, 267, 990
SspI	AATATT	1 cut(s)	751
StyD4I	CCNGG	1 cut(s)	1202
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	132
TaiI	ACGT	1 cut(s)	1138
TaqI	TCGA	5 cut(s)	440, 668, 812, 1169, 1208
TasI	AATT	9 cut(s)	64, 73, 185, 396, 475, 526, 839, 1073, 1196
TatI	WGTACW	2 cut(s)	722, 982
TauI	GCSGC	3 cut(s)	93, 269, 992
TfiI	GAWTC	2 cut(s)	538, 885
Tru1I	TTAA	6 cut(s)	399, 486, 495, 869, 963, 971
Tru9I	TTAA	6 cut(s)	399, 486, 495, 869, 963, 971
TscAI	CASTG	2 cut(s)	649, 879
TseFI	GTSAC	2 cut(s)	126, 411
TseI	GCWGC	7 cut(s)	99, 102, 588, 596, 614, 713, 976
Tsp45I	GTSAC	2 cut(s)	126, 411
TspDTI	ATGAA	5 cut(s)	240, 341, 362, 530, 1107
TspGWI	ACGGA	1 cut(s)	1172
TspRI	CASTG	2 cut(s)	649, 879
VpaK11BI	GGWCC	1 cut(s)	177
XapI	RAATTY	3 cut(s)	64, 185, 475
XceI	RCATGY	1 cut(s)	810
XmiI	GTMKAC	1 cut(s)	1154
XmnI	GAANNNNTTC	1 cut(s)	1177
ZrmI	AGTACT	1 cut(s)	984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.