Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005876

Physical Location & Seq

Genomic Coordinates Reverse (-)

21475516 .. 21479465

Gene Structure 3950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G269400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGACTTCCTCTCATTTTCTCTGCCATAGCCCCATCTTCACCCCTTCTCCCAATATTATTGAAAATCGCAGTCTCTCTTCGTTCAGGTCACATGGGTCCTCTTTTTTTGACTCAAAGTCTAGAAATCGAAGGACCCCATTTGTCAGATTCATGGTTTCTGCCAGAAAACAAGTAGAGATAGTGTACAATCCTGATGAAAGGATAAACAAGCTGGCAGATGAGGTGGACAAGGAAGCCGCTCCGGTTTCAAGGCTCACTCTATTCTCACCTTGCAAGATAAATGTTTTCTTGAGAATAACTAACAAAAGGGAAGATGGGTTTCATGATTTGGCATCTCTCTTTCACGTAATAAGCCTTGGAGATGTAATTAAGTTTTCTTTGTCACCCTCAAAAGCTCAAGATCGTTTGTCAACCAATGTGCCTGGGGTCCCCCTTGATGATAGAAATTTGATTATTAAGGCCCTTAACCTTTACAGGAAGAAGACTGGTAGCAACAATTTCTTTTGGATTCATCTTGACAAGAAGGTGCCCACAGGAGCAGGGCTGGGTGGTGGAAGCAGCAATGCTGCAACTGCACTATGGGCAGCAAATCAGTTTAATGGTTTTCTTGCCACTGAGAAGGAACTCCAAGAATGGTCGAGTGAGATTGGTTCAGATGTTCCCTTCTTTTTCTCTCAAGGAGCAGCCTATTGTACTGGTCGAGGTGAGGTTGTTCAAAATGTCCCTCCACCGCTACCATTGGACCTTCCAATGGTTCTTATAAAGCCCCAACAGGCATGTTCAACCGCTGAAGTTTACAAGCGCCTTCAATTGGATAGAACTAGTAAGTCTGATCCTGTAACTTTGCTGGAGAAAATTTCAAGGAATGGAATATCACAGGATGTTTGCATCAATGATTTAGAACCTCCAGCGTTTGAAGTTCTTCCATCTCTTAAAAGATTAAAACAGCGTGTACTTGCAGCAAGCCGTGGACAATATGGTGCTGTTTTTATGTCTGGAAGTGGAAGCACTATTGTTGGGATTGGTTCTCCAGATCCTCCCCAATTCGTTTATGATGACGATGAATATAGAGATGTGTTTTTGTCAGAGGCCAACTTTCTCACTCGTGAAGAAAATAACTGGTATACAGAACCTGCTTCGAGAAGTGCTCGTGGCTCATCCTCCCAATTTTCCCAGTCAATTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009509 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050515

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

396

Amino Acids

43.87

Weight (kDa)

8.19

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26930
fragaria_vesca	FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650
malus_domestica	MD03G1163100.v1.1
prunus_persica	Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1
pyrus_communis	pycom5153684g00180
rosa_chinensis	RchiOBHm_Chr5g0050131
rosa_laevigata	RLG00000034688
rosa_multiflora	Rmu_sc0002289.1_g000014 Rmu_sc0002289.1_g000015
rosa_roxburghii	Rroxscaffold_1G00030810 Rroxscaffold_3G00235880 Rroxscaffold_3G00235890 Rroxscaffold_3G00235900
rosa_rugosa	Rorug05G0259000
rosa_samantha	Rh5AG330800 Rh5BG341500 Rh5CG368000 Rh5DG354300
rosa_wichuraiana	Rw5G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	761
Acc36I	ACCTGC	1 cut(s)	1141
AccB1I	GGYRCC	1 cut(s)	526
AccBSI	CCGCTC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	1124
AciI	CCGC	3 cut(s)	237, 731, 786
AclWI	GGATC	2 cut(s)	827, 1028
AcsI	RAATTY	2 cut(s)	445, 855
AcuI	CTGAAG	1 cut(s)	810
AfaI	GTAC	3 cut(s)	185, 694, 954
AfiI	CCNNNNNNNGG	2 cut(s)	751, 811
AgsI	TTSAA	7 cut(s)	62, 249, 716, 783, 809, 861, 917
AhdI	GACNNNNNGTC	1 cut(s)	115
AhlI	ACTAGT	1 cut(s)	821
AjnI	CCWGG	1 cut(s)	421
AluBI	AGCT	2 cut(s)	211, 395
AluI	AGCT	2 cut(s)	211, 395
Alw21I	GWGCWC	1 cut(s)	1150
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	2 cut(s)	827, 1028
AlwNI	CAGNNNCTG	1 cut(s)	1133
AoxI	GGCC	2 cut(s)	459, 1089
ApeKI	GCWGC	5 cut(s)	558, 566, 584, 683, 959
ApoI	RAATTY	2 cut(s)	445, 855
Asp700I	GAANNNNTTC	1 cut(s)	921
AspLEI	GCGC	1 cut(s)	804
AspS9I	GGNCC	5 cut(s)	96, 132, 427, 460, 742
AsuHPI	GGTGA	4 cut(s)	31, 258, 375, 716
AvaII	GGWCC	4 cut(s)	96, 132, 427, 742
BaeGI	GKGCMC	1 cut(s)	531
BanI	GGYRCC	1 cut(s)	526
BauI	CACGAG	2 cut(s)	1104, 1149
BbsI	GAAGAC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	1150
BbvI	GCAGC	5 cut(s)	553, 570, 596, 695, 971
BccI	CCATC	3 cut(s)	41, 308, 934
BceAI	ACGGC	1 cut(s)	951
BciT130I	CCWGG	1 cut(s)	423
BcoDI	GTCTC	1 cut(s)	77
BcuI	ACTAGT	1 cut(s)	821
BfaI	CTAG	2 cut(s)	120, 822
BfoI	RGCGCY	1 cut(s)	805
BfuAI	ACCTGC	1 cut(s)	1141
BisI	GCNGC	6 cut(s)	237, 559, 567, 585, 684, 960
BlsI	GCNGC	6 cut(s)	238, 560, 568, 586, 685, 961
Bme1390I	CCNGG	1 cut(s)	423
Bme18I	GGWCC	4 cut(s)	96, 132, 427, 742
BmeRI	GACNNNNNGTC	1 cut(s)	115
BmgT120I	GGNCC	5 cut(s)	96, 132, 427, 460, 742
BmiI	GGNNCC	5 cut(s)	97, 134, 428, 429, 528
BmrFI	CCNGG	1 cut(s)	423
BmrI	ACTGGG	1 cut(s)	1168
BmsI	GCATC	2 cut(s)	341, 897
BmuI	ACTGGG	1 cut(s)	1168
BpiI	GAAGAC	1 cut(s)	488
BplI	GAGNNNNNCTC	2 cut(s)	1132, 1164
BpmI	CTGGAG	3 cut(s)	869, 891, 1014
BpuEI	CTTGAG	3 cut(s)	310, 381, 660
BsaAI	YACGTR	1 cut(s)	346
BsaJI	CCNNGG	3 cut(s)	355, 422, 967
BsaWI	WCCGGW	1 cut(s)	241
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	2 cut(s)	751, 811
Bse1I	ACTGG	4 cut(s)	490, 700, 1124, 1174
Bse3DI	GCAATG	1 cut(s)	568
BseBI	CCWGG	1 cut(s)	423
BseDI	CCNNGG	3 cut(s)	355, 422, 967
BseGI	GGATG	2 cut(s)	886, 1157
BseLI	CCNNNNNNNGG	2 cut(s)	751, 811
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	1 cut(s)	606
BseNI	ACTGG	4 cut(s)	490, 700, 1124, 1174
BseSI	GKGCMC	1 cut(s)	531
BseXI	GCAGC	5 cut(s)	553, 570, 596, 695, 971
BseYI	CCCAGC	1 cut(s)	544
BsgI	GTGCAG	1 cut(s)	558
BshFI	GGCC	2 cut(s)	461, 1091
BshNI	GGYRCC	1 cut(s)	526
BsiHKAI	GWGCWC	1 cut(s)	1150
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	2 cut(s)	413, 707
BslI	CCNNNNNNNGG	2 cut(s)	751, 811
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	2 cut(s)	413, 707
BsnI	GGCC	2 cut(s)	461, 1091
Bsp1286I	GDGCHC	2 cut(s)	531, 1150
Bsp1407I	TGTACA	1 cut(s)	183
Bsp143I	GATC	3 cut(s)	400, 832, 1033
BspACI	CCGC	3 cut(s)	237, 731, 786
BspANI	GGCC	2 cut(s)	461, 1091
BspCNI	CTCAG	1 cut(s)	607
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	5 cut(s)	97, 134, 428, 429, 528
BspMI	ACCTGC	1 cut(s)	1141
BspPI	GGATC	2 cut(s)	827, 1028
BspT107I	GGYRCC	1 cut(s)	526
BsrBI	CCGCTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	568
BsrGI	TGTACA	1 cut(s)	183
BsrI	ACTGG	4 cut(s)	490, 700, 1124, 1174
BssECI	CCNNGG	3 cut(s)	355, 422, 967
BssMI	GATC	3 cut(s)	400, 832, 1033
BssNAI	GTATAC	1 cut(s)	1125
BssSI	CACGAG	2 cut(s)	1104, 1149
BssT1I	CCWWGG	1 cut(s)	355
Bst1107I	GTATAC	1 cut(s)	1125
Bst2BI	CACGAG	2 cut(s)	1104, 1149
Bst2UI	CCWGG	1 cut(s)	423
Bst6I	CTCTTC	1 cut(s)	82
BstAUI	TGTACA	1 cut(s)	183
BstBAI	YACGTR	1 cut(s)	346
BstC8I	GCNNGC	2 cut(s)	213, 964
BstDEI	CTNAG	1 cut(s)	615
BstDSI	CCRYGG	1 cut(s)	967
BstF5I	GGATG	2 cut(s)	886, 1157
BstH2I	RGCGCY	1 cut(s)	805
BstHHI	GCGC	1 cut(s)	804
BstKTI	GATC	3 cut(s)	403, 835, 1036
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	3 cut(s)	400, 832, 1033
BstMWI	GCNNNNNNNGC	2 cut(s)	572, 581
BstNI	CCWGG	1 cut(s)	423
BstNSI	RCATGY	1 cut(s)	780
BstSCI	CCNGG	1 cut(s)	421
BstSLI	GKGCMC	1 cut(s)	531
BstV1I	GCAGC	5 cut(s)	553, 570, 596, 695, 971
BstV2I	GAAGAC	1 cut(s)	488
BstX2I	RGATCY	1 cut(s)	1033
BstYI	RGATCY	1 cut(s)	1033
BstZ17I	GTATAC	1 cut(s)	1125
BsuRI	GGCC	2 cut(s)	461, 1091
BtgI	CCRYGG	1 cut(s)	967
BtsCI	GGATG	2 cut(s)	886, 1157
BtsIMutI	CAGTG	1 cut(s)	612
BveI	ACCTGC	1 cut(s)	1141
Cac8I	GCNNGC	2 cut(s)	213, 964
CaiI	CAGNNNCTG	1 cut(s)	1133
CciI	TCATGA	1 cut(s)	322
CfoI	GCGC	1 cut(s)	804
Cfr13I	GGNCC	5 cut(s)	96, 132, 427, 460, 742
Csp6I	GTAC	3 cut(s)	184, 693, 953
CviAII	CATG	4 cut(s)	92, 151, 323, 777
CviQI	GTAC	3 cut(s)	184, 693, 953
DdeI	CTNAG	1 cut(s)	615
DpnI	GATC	3 cut(s)	402, 834, 1035
DpnII	GATC	3 cut(s)	400, 832, 1033
DriI	GACNNNNNGTC	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	82
Eam1105I	GACNNNNNGTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	355
Eco47I	GGWCC	4 cut(s)	96, 132, 427, 742
Eco57I	CTGAAG	1 cut(s)	810
EcoO109I	RGGNCCY	4 cut(s)	96, 132, 427, 460
EcoRII	CCWGG	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	4 cut(s)	95, 154, 326, 780
FaqI	GGGAC	2 cut(s)	413, 707
FatI	CATG	4 cut(s)	91, 150, 322, 776
FblI	GTMKAC	1 cut(s)	1124
Fnu4HI	GCNGC	6 cut(s)	237, 559, 567, 585, 684, 960
FokI	GGATG	2 cut(s)	893, 1144
Fsp4HI	GCNGC	6 cut(s)	237, 559, 567, 585, 684, 960
FspBI	CTAG	2 cut(s)	120, 822
GlaI	GCGC	1 cut(s)	803
GluI	GCNGC	6 cut(s)	237, 559, 567, 585, 684, 960
GsaI	CCCAGC	1 cut(s)	548
GsuI	CTGGAG	3 cut(s)	869, 891, 1014
HaeII	RGCGCY	1 cut(s)	805
HaeIII	GGCC	2 cut(s)	461, 1091
HapII	CCGG	1 cut(s)	242
HhaI	GCGC	1 cut(s)	804
Hin1II	CATG	4 cut(s)	95, 154, 326, 780
Hin6I	GCGC	1 cut(s)	802
HinP1I	GCGC	1 cut(s)	802
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HinfI	GANTC	3 cut(s)	110, 147, 508
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	4 cut(s)	31, 258, 375, 716
Hpy166II	GTNNAC	7 cut(s)	184, 226, 411, 796, 953, 971, 1125
Hpy188I	TCNGA	4 cut(s)	146, 655, 832, 1087
Hpy8I	GTNNAC	7 cut(s)	184, 226, 411, 796, 953, 971, 1125
HpyAV	CCTTC	7 cut(s)	54, 123, 517, 613, 673, 755, 815
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	5 cut(s)	273, 569, 575, 888, 959
HpyF10VI	GCNNNNNNNGC	2 cut(s)	572, 581
HpyF3I	CTNAG	1 cut(s)	615
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	4 cut(s)	95, 154, 326, 780
HspAI	GCGC	1 cut(s)	802
KflI	GGGWCCC	1 cut(s)	427
Kzo9I	GATC	3 cut(s)	400, 832, 1033
LmnI	GCTCC	3 cut(s)	244, 536, 680
Lsp1109I	GCAGC	5 cut(s)	553, 570, 596, 695, 971
LweI	GCATC	2 cut(s)	341, 897
MaeI	CTAG	2 cut(s)	120, 822
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	3 cut(s)	87, 381, 838
MalI	GATC	3 cut(s)	402, 834, 1035
MbiI	CCGCTC	1 cut(s)	239
MboI	GATC	3 cut(s)	400, 832, 1033
MboII	GAAGA	7 cut(s)	28, 69, 323, 490, 493, 914, 1121
MfeI	CAATTG	2 cut(s)	809, 1179
MflI	RGATCY	1 cut(s)	1033
MhlI	GDGCHC	2 cut(s)	531, 1150
MluCI	AATT	8 cut(s)	366, 445, 496, 809, 855, 1043, 1166, 1179
MlyI	GAGTC	1 cut(s)	104
MroXI	GAANNNNTTC	1 cut(s)	921
MseI	TTAA	6 cut(s)	369, 456, 465, 597, 933, 941
MspA1I	CMGCKG	1 cut(s)	788
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	423
MunI	CAATTG	2 cut(s)	809, 1179
MvaI	CCWGG	1 cut(s)	423
MwoI	GCNNNNNNNGC	2 cut(s)	572, 581
NdeII	GATC	3 cut(s)	400, 832, 1033
NlaIII	CATG	4 cut(s)	95, 154, 326, 780
NlaIV	GGNNCC	5 cut(s)	97, 134, 428, 429, 528
NmuCI	GTSAC	2 cut(s)	87, 381
NspI	RCATGY	1 cut(s)	780
PagI	TCATGA	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	921
PfeI	GAWTC	2 cut(s)	147, 508
PkrI	GCNGC	6 cut(s)	238, 560, 568, 586, 685, 961
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
Ppu21I	YACGTR	1 cut(s)	346
PpuMI	RGGWCCY	3 cut(s)	96, 132, 427
PsiI	TTATAA	1 cut(s)	761
Psp5II	RGGWCCY	3 cut(s)	96, 132, 427
Psp6I	CCWGG	1 cut(s)	421
PspFI	CCCAGC	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	5 cut(s)	97, 134, 428, 429, 528
PspPI	GGNCC	5 cut(s)	96, 132, 427, 460, 742
PspPPI	RGGWCCY	3 cut(s)	96, 132, 427
PstNI	CAGNNNCTG	1 cut(s)	1133
PsuI	RGATCY	1 cut(s)	1033
RsaI	GTAC	3 cut(s)	185, 694, 954
RsaNI	GTAC	3 cut(s)	184, 693, 953
SaqAI	TTAA	6 cut(s)	369, 456, 465, 597, 933, 941
SatI	GCNGC	6 cut(s)	237, 559, 567, 585, 684, 960
Sau3AI	GATC	3 cut(s)	400, 832, 1033
Sau96I	GGNCC	5 cut(s)	96, 132, 427, 460, 742
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	423
SduI	GDGCHC	2 cut(s)	531, 1150
SfaNI	GCATC	2 cut(s)	341, 897
SinI	GGWCC	4 cut(s)	96, 132, 427, 742
SmlI	CTYRAG	3 cut(s)	289, 396, 675
SmoI	CTYRAG	3 cut(s)	289, 396, 675
SpeI	ACTAGT	1 cut(s)	821
Sse9I	AATT	8 cut(s)	366, 445, 496, 809, 855, 1043, 1166, 1179
SsiI	CCGC	3 cut(s)	237, 731, 786
SspI	AATATT	1 cut(s)	55
SspMI	CTAG	2 cut(s)	120, 822
StyD4I	CCNGG	1 cut(s)	421
StyI	CCWWGG	1 cut(s)	355
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	4 cut(s)	127, 638, 700, 1139
TasI	AATT	8 cut(s)	366, 445, 496, 809, 855, 1043, 1166, 1179
TatI	WGTACW	3 cut(s)	183, 692, 952
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	147, 508
Tru1I	TTAA	6 cut(s)	369, 456, 465, 597, 933, 941
Tru9I	TTAA	6 cut(s)	369, 456, 465, 597, 933, 941
TscAI	CASTG	1 cut(s)	619
TseFI	GTSAC	2 cut(s)	87, 381
TseI	GCWGC	5 cut(s)	558, 566, 584, 683, 959
Tsp45I	GTSAC	2 cut(s)	87, 381
TspDTI	ATGAA	5 cut(s)	139, 210, 311, 500, 1077
TspRI	CASTG	1 cut(s)	619
VpaK11BI	GGWCC	4 cut(s)	96, 132, 427, 742
XapI	RAATTY	2 cut(s)	445, 855
XbaI	TCTAGA	1 cut(s)	119
XceI	RCATGY	1 cut(s)	780
XmiI	GTMKAC	1 cut(s)	1124
XmnI	GAANNNNTTC	1 cut(s)	921
XspI	CTAG	2 cut(s)	120, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.