Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005876

Physical Location & Seq

Genomic Coordinates Reverse (-)

49241147 .. 49247640

Gene Structure 6494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG354300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGCTGGCTGCACTGGGGGTTCCTATGGCTTTATCTCAGTTTCTCGGCCATAATCCAATCTTGCAGCCTTGTCCCAATTTGTTCGAAAACCGCAGAGTGCATTCGCTACGTACACATGGGTCGTCCTCATATTTCAACTCAAAGTCGAGAAATGTCAGCGTCATGGTTTCTGCCAACAGAAAACAAGTAGAGATAGTATACGATCCTGATGAAAGGATAAACAAGTTGGCAGATAAGGTGGAAAATGAGGCTCCGCCGCTTTCAAGGCTGTCACTGTTCTCGCCTTGCAAGATTAATGTTTTCTTGAGAATAACTAACAAAAGAGAAGATGGGTTTCATGACTTGGCATCTCTCTTTCATGTCATAAGCCTTGGAGATGTGATTAAGTTCTCTTTGTCACCCTCAAAATCCAAAGATCGTTTGTCGACCAATGTGTCAGGGGTTCCCCTTGATGATAGGAATTTGATTATCAAGGCCCTTAATCTCTACAGGAAGAAGACTGGTAGCGACAATTTCTTTTGGATTCATCTTGATAAGAAAGTGCCTACAGGAGCAGGACTTGGTGGTGGAAGCAGCAATGCTGCAACTGCGCTATGGGCAGCAAATCAGTTTAATGGTTGTCTTGCCACTGAGAAGGAGCTCCAAGAATGGTCGAGTGAGATTGGTTCAGATGTTCCCTTCTTTTTCTCTCAAGGTGCAGCCTATTGTACTGGTCGTGGTGAGGTTGTTCAAAATATTCCTCCACCTGTACCCTTTGACATTCCGATGGTTCTTATAAAGCCTCAGCAGGCATGTTCAACAGCTGAAGTTTACAAGCGCCTGCAGTTGGATACAACTAGTAGTGTTGATCCTTTAAAATTGCTGGAAAGAATCTCAGTGAATGGAATATCACAAGATGTTTGCATCAATGATTTAGAACCTCCAGCATTTCAAGTTCTTCCATCTCTTAAAAGATTGAAGCAGCGAGTACTTGCTGCTAGCCGTGGACAATATGATGCTGTTTTCATGTCTGGAAGTGGAAGCACTATTGTTGGGATTGGTTCTCCAGATCCTCCTCAGTTTGTATATGATGACAACGAATACAAGGATGTGTTTTTGTCAGGTCAGTTGTCAGCCCAATTTAACTATATCTATTCACTTTCAGAGTGCATCATCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009509 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050515

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

386

Amino Acids

42.52

Weight (kDa)

7.58

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	154 - 231	3e-14	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26930
fragaria_vesca	FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650
malus_domestica	MD03G1163100.v1.1
prunus_persica	Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1
pyrus_communis	pycom5153684g00180
rosa_chinensis	RchiOBHm_Chr5g0050131
rosa_laevigata	RLG00000034688
rosa_multiflora	Rmu_sc0002289.1_g000014 Rmu_sc0002289.1_g000015
rosa_roxburghii	Rroxscaffold_1G00030810 Rroxscaffold_3G00235880 Rroxscaffold_3G00235890 Rroxscaffold_3G00235900
rosa_rugosa	Rorug05G0259000
rosa_samantha	Rh5AG330800 Rh5BG341500 Rh5CG368000 Rh5DG354300
rosa_wichuraiana	Rw5G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	776
AasI	GACNNNNNNGTC	1 cut(s)	433
AccI	GTMKAC	2 cut(s)	198, 425
AciI	CCGC	3 cut(s)	91, 254, 257
AclWI	GGATC	3 cut(s)	197, 842, 1043
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	460
AcuI	CTGAAG	1 cut(s)	825
AfaI	GTAC	4 cut(s)	112, 709, 750, 969
AfiI	CCNNNNNNNGG	1 cut(s)	826
AgsI	TTSAA	6 cut(s)	136, 264, 731, 798, 932, 958
AhlI	ACTAGT	1 cut(s)	836
AluBI	AGCT	2 cut(s)	640, 803
AluI	AGCT	2 cut(s)	640, 803
Alw21I	GWGCWC	1 cut(s)	642
AlwI	GGATC	3 cut(s)	197, 842, 1043
AoxI	GGCC	2 cut(s)	46, 474
ApeKI	GCWGC	8 cut(s)	8, 64, 573, 581, 599, 698, 961, 974
ApoI	RAATTY	1 cut(s)	460
AseI	ATTAAT	1 cut(s)	294
AspLEI	GCGC	2 cut(s)	592, 819
AspS9I	GGNCC	1 cut(s)	475
AsuHPI	GGTGA	2 cut(s)	390, 731
AsuII	TTCGAA	1 cut(s)	84
AsuNHI	GCTAGC	1 cut(s)	977
BanII	GRGCYC	1 cut(s)	642
BbsI	GAAGAC	1 cut(s)	503
Bbv12I	GWGCWC	1 cut(s)	642
BbvCI	CCTCAGC	1 cut(s)	783
BbvI	GCAGC	7 cut(s)	76, 568, 585, 611, 710, 961, 973
BccI	CCATC	3 cut(s)	323, 760, 949
BceAI	ACGGC	1 cut(s)	966
BciVI	GTATCC	1 cut(s)	823
BcuI	ACTAGT	1 cut(s)	836
BfaI	CTAG	2 cut(s)	837, 978
BfmI	CTRYAG	3 cut(s)	487, 546, 821
BfoI	RGCGCY	1 cut(s)	820
BfuI	GTATCC	1 cut(s)	823
BisI	GCNGC	9 cut(s)	9, 65, 257, 574, 582, 600, 699, 962, 975
BlsI	GCNGC	9 cut(s)	10, 66, 258, 575, 583, 601, 700, 963, 976
BmcAI	AGTACT	1 cut(s)	969
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	3 cut(s)	21, 252, 444
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	3 cut(s)	356, 912, 985
BmtI	GCTAGC	1 cut(s)	981
BmuI	ACTGGG	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	503
BpmI	CTGGAG	2 cut(s)	906, 1029
Bpu10I	CCTNAGC	1 cut(s)	783
Bpu14I	TTCGAA	1 cut(s)	84
BpuEI	CTTGAG	2 cut(s)	325, 675
BsaAI	YACGTR	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	370, 982
Bsc4I	CCNNNNNNNGG	1 cut(s)	826
Bse1I	ACTGG	3 cut(s)	18, 505, 715
Bse3DI	GCAATG	1 cut(s)	583
BseDI	CCNNGG	2 cut(s)	370, 982
BseGI	GGATG	1 cut(s)	1093
BseLI	CCNNNNNNNGG	1 cut(s)	826
BseMI	GCAATG	1 cut(s)	583
BseMII	CTCAG	5 cut(s)	50, 621, 797, 888, 1070
BseNI	ACTGG	3 cut(s)	18, 505, 715
BseRI	GAGGAG	1 cut(s)	1044
BseXI	GCAGC	7 cut(s)	76, 568, 585, 611, 710, 961, 973
BsgI	GTGCAG	1 cut(s)	717
BshFI	GGCC	2 cut(s)	48, 476
BsiHKAI	GWGCWC	1 cut(s)	642
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	826
BsmFI	GGGAC	1 cut(s)	57
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	2 cut(s)	48, 476
Bsp119I	TTCGAA	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	642
Bsp143I	GATC	4 cut(s)	202, 415, 847, 1048
BspACI	CCGC	3 cut(s)	91, 254, 257
BspANI	GGCC	2 cut(s)	48, 476
BspCNI	CTCAG	5 cut(s)	49, 622, 796, 887, 1069
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	3 cut(s)	21, 252, 444
BspMAI	CTGCAG	1 cut(s)	825
BspOI	GCTAGC	1 cut(s)	981
BspPI	GGATC	3 cut(s)	197, 842, 1043
BspT104I	TTCGAA	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	583
BsrI	ACTGG	3 cut(s)	18, 505, 715
BssECI	CCNNGG	2 cut(s)	370, 982
BssMI	GATC	4 cut(s)	202, 415, 847, 1048
BssNAI	GTATAC	1 cut(s)	199
BssT1I	CCWWGG	1 cut(s)	370
Bst1107I	GTATAC	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	276
BstBAI	YACGTR	1 cut(s)	110
BstBI	TTCGAA	1 cut(s)	84
BstC8I	GCNNGC	4 cut(s)	6, 789, 821, 979
BstDEI	CTNAG	5 cut(s)	36, 630, 783, 874, 1056
BstDSI	CCRYGG	1 cut(s)	982
BstF5I	GGATG	1 cut(s)	1093
BstH2I	RGCGCY	1 cut(s)	820
BstHHI	GCGC	2 cut(s)	592, 819
BstKTI	GATC	4 cut(s)	205, 418, 850, 1051
BstMBI	GATC	4 cut(s)	202, 415, 847, 1048
BstMWI	GCNNNNNNNGC	3 cut(s)	265, 587, 596
BstNSI	RCATGY	1 cut(s)	795
BstSFI	CTRYAG	3 cut(s)	487, 546, 821
BstSNI	TACGTA	1 cut(s)	110
BstV1I	GCAGC	7 cut(s)	76, 568, 585, 611, 710, 961, 973
BstV2I	GAAGAC	1 cut(s)	503
BstX2I	RGATCY	1 cut(s)	1048
BstYI	RGATCY	1 cut(s)	1048
BstZ17I	GTATAC	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	823
BsuRI	GGCC	2 cut(s)	48, 476
BtgI	CCRYGG	1 cut(s)	982
BtsCI	GGATG	1 cut(s)	1093
BtsIMutI	CAGTG	4 cut(s)	11, 272, 627, 882
Cac8I	GCNNGC	4 cut(s)	6, 789, 821, 979
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	2 cut(s)	592, 819
Cfr13I	GGNCC	1 cut(s)	475
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	4 cut(s)	111, 708, 749, 968
CviAII	CATG	6 cut(s)	116, 163, 338, 359, 792, 1006
CviQI	GTAC	4 cut(s)	111, 708, 749, 968
DdeI	CTNAG	5 cut(s)	36, 630, 783, 874, 1056
DpnI	GATC	4 cut(s)	204, 417, 849, 1050
DpnII	GATC	4 cut(s)	202, 415, 847, 1048
DraI	TTTAAA	1 cut(s)	855
DrdI	GACNNNNNNGTC	1 cut(s)	433
DseDI	GACNNNNNNGTC	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	46
EciI	GGCGGA	1 cut(s)	243
Ecl136II	GAGCTC	1 cut(s)	640
Eco105I	TACGTA	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	642
Eco53kI	GAGCTC	1 cut(s)	640
Eco57I	CTGAAG	1 cut(s)	825
EcoICRI	GAGCTC	1 cut(s)	640
EcoO109I	RGGNCCY	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	642
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	6 cut(s)	119, 166, 341, 362, 795, 1009
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	6 cut(s)	115, 162, 337, 358, 791, 1005
FblI	GTMKAC	2 cut(s)	198, 425
Fnu4HI	GCNGC	9 cut(s)	9, 65, 257, 574, 582, 600, 699, 962, 975
FokI	GGATG	1 cut(s)	1100
FriOI	GRGCYC	1 cut(s)	642
Fsp4HI	GCNGC	9 cut(s)	9, 65, 257, 574, 582, 600, 699, 962, 975
FspBI	CTAG	2 cut(s)	837, 978
GlaI	GCGC	2 cut(s)	591, 818
GluI	GCNGC	9 cut(s)	9, 65, 257, 574, 582, 600, 699, 962, 975
GsuI	CTGGAG	2 cut(s)	906, 1029
HaeII	RGCGCY	1 cut(s)	820
HaeIII	GGCC	2 cut(s)	48, 476
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	2 cut(s)	592, 819
Hin1II	CATG	6 cut(s)	119, 166, 341, 362, 795, 1009
Hin6I	GCGC	2 cut(s)	590, 817
HinP1I	GCGC	2 cut(s)	590, 817
HincII	GTYRAC	1 cut(s)	426
HindII	GTYRAC	1 cut(s)	426
HinfI	GANTC	2 cut(s)	523, 870
HphI	GGTGA	2 cut(s)	390, 731
Hpy166II	GTNNAC	5 cut(s)	113, 199, 426, 811, 986
Hpy188I	TCNGA	3 cut(s)	670, 765, 1144
Hpy188III	TCNNGA	7 cut(s)	147, 206, 304, 338, 530, 1011, 1046
Hpy8I	GTNNAC	5 cut(s)	113, 199, 426, 811, 986
HpyAV	CCTTC	2 cut(s)	628, 688
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	9 cut(s)	11, 64, 100, 288, 584, 698, 823, 903, 1149
HpyF10VI	GCNNNNNNNGC	3 cut(s)	265, 587, 596
HpyF3I	CTNAG	5 cut(s)	36, 630, 783, 874, 1056
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	6 cut(s)	119, 166, 341, 362, 795, 1009
HspAI	GCGC	2 cut(s)	590, 817
Kzo9I	GATC	4 cut(s)	202, 415, 847, 1048
LmnI	GCTCC	4 cut(s)	256, 551, 637, 645
Lsp1109I	GCAGC	7 cut(s)	76, 568, 585, 611, 710, 961, 973
LweI	GCATC	3 cut(s)	356, 912, 985
MaeI	CTAG	2 cut(s)	837, 978
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	2 cut(s)	270, 396
MalI	GATC	4 cut(s)	204, 417, 849, 1050
MboI	GATC	4 cut(s)	202, 415, 847, 1048
MboII	GAAGA	4 cut(s)	338, 505, 508, 929
MflI	RGATCY	1 cut(s)	1048
MhlI	GDGCHC	1 cut(s)	642
MluCI	AATT	6 cut(s)	76, 460, 511, 857, 1118, 1156
MmeI	TCCRAC	1 cut(s)	807
MnlI	CCTC	9 cut(s)	136, 241, 412, 715, 750, 792, 930, 1062, 1065
MseI	TTAA	8 cut(s)	294, 384, 480, 612, 854, 948, 1122, 1159
MslI	CAYNNNNRTG	1 cut(s)	764
MspA1I	CMGCKG	1 cut(s)	803
Mva1269I	GAATGC	1 cut(s)	100
MwoI	GCNNNNNNNGC	3 cut(s)	265, 587, 596
NdeII	GATC	4 cut(s)	202, 415, 847, 1048
NheI	GCTAGC	1 cut(s)	977
NlaIII	CATG	6 cut(s)	119, 166, 341, 362, 795, 1009
NlaIV	GGNNCC	3 cut(s)	21, 252, 444
NmeAIII	GCCGAG	1 cut(s)	24
NmuCI	GTSAC	2 cut(s)	270, 396
NspI	RCATGY	1 cut(s)	795
NspV	TTCGAA	1 cut(s)	84
PagI	TCATGA	1 cut(s)	337
PctI	GAATGC	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	523, 870
PkrI	GCNGC	9 cut(s)	10, 66, 258, 575, 583, 601, 700, 963, 976
Ppu21I	YACGTR	1 cut(s)	110
PshBI	ATTAAT	1 cut(s)	294
PsiI	TTATAA	1 cut(s)	776
Psp124BI	GAGCTC	1 cut(s)	642
PspN4I	GGNNCC	3 cut(s)	21, 252, 444
PspPI	GGNCC	1 cut(s)	475
PstI	CTGCAG	1 cut(s)	825
PsuI	RGATCY	1 cut(s)	1048
PvuII	CAGCTG	1 cut(s)	803
RsaI	GTAC	4 cut(s)	112, 709, 750, 969
RsaNI	GTAC	4 cut(s)	111, 708, 749, 968
RseI	CAYNNNNRTG	1 cut(s)	764
SacI	GAGCTC	1 cut(s)	642
SalI	GTCGAC	1 cut(s)	424
SaqAI	TTAA	8 cut(s)	294, 384, 480, 612, 854, 948, 1122, 1159
SatI	GCNGC	9 cut(s)	9, 65, 257, 574, 582, 600, 699, 962, 975
Sau3AI	GATC	4 cut(s)	202, 415, 847, 1048
Sau96I	GGNCC	1 cut(s)	475
ScaI	AGTACT	1 cut(s)	969
SduI	GDGCHC	1 cut(s)	642
SetI	ASST	9 cut(s)	112, 240, 642, 697, 726, 748, 805, 922, 1105
SfaNI	GCATC	3 cut(s)	356, 912, 985
SfcI	CTRYAG	3 cut(s)	487, 546, 821
SfuI	TTCGAA	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	764
SmlI	CTYRAG	2 cut(s)	304, 690
SmoI	CTYRAG	2 cut(s)	304, 690
SnaBI	TACGTA	1 cut(s)	110
SpeI	ACTAGT	1 cut(s)	836
Sse9I	AATT	6 cut(s)	76, 460, 511, 857, 1118, 1156
SsiI	CCGC	3 cut(s)	91, 254, 257
SspI	AATATT	1 cut(s)	736
SspMI	CTAG	2 cut(s)	837, 978
SstI	GAGCTC	1 cut(s)	642
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	276
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	4 cut(s)	84, 146, 425, 653
TasI	AATT	6 cut(s)	76, 460, 511, 857, 1118, 1156
TatI	WGTACW	2 cut(s)	707, 967
TauI	GCSGC	1 cut(s)	259
TfiI	GAWTC	2 cut(s)	523, 870
Tru1I	TTAA	8 cut(s)	294, 384, 480, 612, 854, 948, 1122, 1159
Tru9I	TTAA	8 cut(s)	294, 384, 480, 612, 854, 948, 1122, 1159
TscAI	CASTG	4 cut(s)	18, 279, 634, 882
TseFI	GTSAC	2 cut(s)	270, 396
TseI	GCWGC	8 cut(s)	8, 64, 573, 581, 599, 698, 961, 974
Tsp45I	GTSAC	2 cut(s)	270, 396
TspDTI	ATGAA	5 cut(s)	225, 326, 347, 515, 994
TspRI	CASTG	4 cut(s)	18, 279, 634, 882
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	1 cut(s)	460
XceI	RCATGY	1 cut(s)	795
XmiI	GTMKAC	2 cut(s)	198, 425
XspI	CTAG	2 cut(s)	837, 978
ZrmI	AGTACT	1 cut(s)	969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.