Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005876

Physical Location & Seq

Genomic Coordinates Reverse (-)

48614624 .. 48620144

Gene Structure 5521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034688

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGCTGGCTGCACTGGGTGCCGGCATATACTATCCTATGGCTTTATCTCAGTTTCTCGGCCATAATCCAATCTTGCAGCCTTGTCCCAATTTGTTCGAAAACCGCAGAGTGCATTCGGTGCGTTCACATGGGTCCTCGTATTTCAACTCAAAGTCGAGAAATGTCAGAGTCATGGTTGTTTCTGCCAACAGAAAACAAGTAGAGATAGTATACGATCCTGATGAAAGGATAAACAAGTTGGCAGATAAGGTGGACAATGAAGCTCCGCCGCTTTCAAGGCTGTCACTGTTCTCGCCTTGCAAGATTAATGTTTTCTTGAGAATAACTAACAAAAGAGAAGACGGGTTTCATGACTTGGCATCTCTCTTTCATGTAATAAGCCTTGGAGATGTGATTAAGTTCTCTTTGTCACCCTCAAAATCCAAAGATCGTTTGTCGACCAATGTGTCAGGGGTTCCCGTTGATGATAGGAATTTGATTATCAAGGCCCTTAATCTTTACAGGAAGAAGACTGGTAGCGACAATTTCTTTTGGATTCATCTTGATAAGAAAGTGCCTACAGGAGCAGGACTTGGTGGTGGAAGCAGCAATGCTGCAACTGCGCTATGGGCAGCAAATCAGTTTAATGGTTGTCTTGCCACTGAGAAGGAGCTCCAAGAATGGTCGAGTGAGATTGGTTCAGATGTTCCCTTCTTTTTCTCTCAAGGTGCAGCCTATTGTACTGGTCGTGGTGAGGTTGTTCAAAATATTCCTCCACCTGTACCCTTTGACATTCCGATGGTTCTTATAAAGCCTCAGCAGGCATGTTCAACAGCTGAAGTTTACAAGCGCCTGCAGTTGGATACAACTAGTAGTATTGATCCTTTAAAATTGCTGGAAAGAATCTCAGTGAATGGAATATCGCAAGATGTTTGCATCAATGATTTAGAACCTCCAGCATTTCAAGTTCTTCCATCTCTTAAAAGATTGAAGCAGCGAGTGCTTGCTGCTAGCCGTGGACAATATGATGCTGTTTTCATGTCTGGAAGTGGAAGCACTATTGTTGGGATTGGTTCTCCAGATCCTCCTCAGTTTGTATATGATGACAACGAATACAAGGATGTGTTTTTGTCAGAGGCCAACTTTCTCACTCGCGAAGAAAATCATTGGTACAGAGAACCTTCATCCAGAAGTGCTAGTGGCCCATCCTCTGATTTTTCCCAGTCTATTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009509 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050515

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

405

Amino Acids

44.63

Weight (kDa)

7.62

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	158 - 235	3.2e-14	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26930
fragaria_vesca	FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650
malus_domestica	MD03G1163100.v1.1
prunus_persica	Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1
pyrus_communis	pycom5153684g00180
rosa_chinensis	RchiOBHm_Chr5g0050131
rosa_laevigata	RLG00000034688
rosa_multiflora	Rmu_sc0002289.1_g000014 Rmu_sc0002289.1_g000015
rosa_roxburghii	Rroxscaffold_1G00030810 Rroxscaffold_3G00235880 Rroxscaffold_3G00235890 Rroxscaffold_3G00235900
rosa_rugosa	Rorug05G0259000
rosa_samantha	Rh5AG330800 Rh5BG341500 Rh5CG368000 Rh5DG354300
rosa_wichuraiana	Rw5G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	788
AasI	GACNNNNNNGTC	1 cut(s)	445
AccB1I	GGYRCC	1 cut(s)	17
AccI	GTMKAC	2 cut(s)	210, 437
AccII	CGCG	1 cut(s)	1134
AciI	CCGC	3 cut(s)	103, 266, 269
AclWI	GGATC	3 cut(s)	209, 854, 1055
AcoI	YGGCCR	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	472
AcuI	CTGAAG	1 cut(s)	837
AdeI	CACNNNGTG	1 cut(s)	17
AfaI	GTAC	3 cut(s)	721, 762, 1151
AfiI	CCNNNNNNNGG	1 cut(s)	838
AgsI	TTSAA	6 cut(s)	145, 276, 743, 810, 944, 970
AhlI	ACTAGT	1 cut(s)	848
AluBI	AGCT	3 cut(s)	263, 652, 815
AluI	AGCT	3 cut(s)	263, 652, 815
Alw21I	GWGCWC	1 cut(s)	654
AlwI	GGATC	3 cut(s)	209, 854, 1055
AoxI	GGCC	4 cut(s)	58, 486, 1116, 1180
ApeKI	GCWGC	8 cut(s)	8, 76, 585, 593, 611, 710, 973, 986
ApoI	RAATTY	1 cut(s)	472
AseI	ATTAAT	1 cut(s)	306
AspLEI	GCGC	2 cut(s)	604, 831
AspS9I	GGNCC	3 cut(s)	132, 487, 1181
AsuHPI	GGTGA	2 cut(s)	402, 743
AsuII	TTCGAA	1 cut(s)	96
AsuNHI	GCTAGC	1 cut(s)	989
AvaII	GGWCC	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	654
BbsI	GAAGAC	2 cut(s)	345, 515
Bbv12I	GWGCWC	1 cut(s)	654
BbvCI	CCTCAGC	1 cut(s)	795
BbvI	GCAGC	7 cut(s)	88, 580, 597, 623, 722, 973, 985
BccI	CCATC	3 cut(s)	772, 961, 1192
BceAI	ACGGC	1 cut(s)	978
BciVI	GTATCC	1 cut(s)	835
BcuI	ACTAGT	1 cut(s)	848
BfaI	CTAG	3 cut(s)	849, 990, 1176
BfmI	CTRYAG	2 cut(s)	558, 833
BfoI	RGCGCY	1 cut(s)	832
BfuI	GTATCC	1 cut(s)	835
BisI	GCNGC	9 cut(s)	9, 77, 269, 586, 594, 612, 711, 974, 987
BlsI	GCNGC	9 cut(s)	10, 78, 270, 587, 595, 613, 712, 975, 988
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	3 cut(s)	132, 487, 1181
BmiI	GGNNCC	3 cut(s)	19, 133, 456
BmrI	ACTGGG	2 cut(s)	23, 1195
BmsI	GCATC	3 cut(s)	368, 924, 997
BmtI	GCTAGC	1 cut(s)	993
BmuI	ACTGGG	2 cut(s)	23, 1195
BpiI	GAAGAC	2 cut(s)	345, 515
BpmI	CTGGAG	2 cut(s)	918, 1041
Bpu10I	CCTNAGC	1 cut(s)	795
Bpu14I	TTCGAA	1 cut(s)	96
BpuEI	CTTGAG	2 cut(s)	337, 687
BsaJI	CCNNGG	2 cut(s)	382, 994
Bsc4I	CCNNNNNNNGG	1 cut(s)	838
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	4 cut(s)	18, 517, 727, 1201
Bse3DI	GCAATG	1 cut(s)	595
BseDI	CCNNGG	2 cut(s)	382, 994
BseGI	GGATG	3 cut(s)	1105, 1163, 1184
BseLI	CCNNNNNNNGG	1 cut(s)	838
BseMI	GCAATG	1 cut(s)	595
BseMII	CTCAG	5 cut(s)	62, 633, 809, 900, 1082
BseNI	ACTGG	4 cut(s)	18, 517, 727, 1201
BseRI	GAGGAG	1 cut(s)	1056
BseXI	GCAGC	7 cut(s)	88, 580, 597, 623, 722, 973, 985
BsgI	GTGCAG	1 cut(s)	729
Bsh1236I	CGCG	1 cut(s)	1134
BshFI	GGCC	4 cut(s)	60, 488, 1118, 1182
BshNI	GGYRCC	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	654
BsiSI	CCGG	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	838
BsmFI	GGGAC	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	4 cut(s)	60, 488, 1118, 1182
Bsp119I	TTCGAA	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	654
Bsp143I	GATC	4 cut(s)	214, 427, 859, 1060
Bsp68I	TCGCGA	1 cut(s)	1134
BspACI	CCGC	3 cut(s)	103, 266, 269
BspANI	GGCC	4 cut(s)	60, 488, 1118, 1182
BspCNI	CTCAG	5 cut(s)	61, 634, 808, 899, 1081
BspFNI	CGCG	1 cut(s)	1134
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	3 cut(s)	19, 133, 456
BspMAI	CTGCAG	1 cut(s)	837
BspOI	GCTAGC	1 cut(s)	993
BspPI	GGATC	3 cut(s)	209, 854, 1055
BspT104I	TTCGAA	1 cut(s)	96
BspT107I	GGYRCC	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	595
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	4 cut(s)	18, 517, 727, 1201
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	2 cut(s)	382, 994
BssMI	GATC	4 cut(s)	214, 427, 859, 1060
BssNAI	GTATAC	1 cut(s)	211
BssT1I	CCWWGG	1 cut(s)	382
Bst1107I	GTATAC	1 cut(s)	211
Bst4CI	ACNGT	1 cut(s)	288
BstAPI	GCANNNNNTGC	3 cut(s)	17, 118, 979
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	6 cut(s)	6, 22, 801, 833, 984, 991
BstDEI	CTNAG	5 cut(s)	48, 642, 795, 886, 1068
BstDSI	CCRYGG	1 cut(s)	994
BstF5I	GGATG	3 cut(s)	1105, 1163, 1184
BstFNI	CGCG	1 cut(s)	1134
BstH2I	RGCGCY	1 cut(s)	832
BstHHI	GCGC	2 cut(s)	604, 831
BstKTI	GATC	4 cut(s)	217, 430, 862, 1063
BstMBI	GATC	4 cut(s)	214, 427, 859, 1060
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 118, 277, 599, 608, 979
BstNSI	RCATGY	1 cut(s)	807
BstSFI	CTRYAG	2 cut(s)	558, 833
BstUI	CGCG	1 cut(s)	1134
BstV1I	GCAGC	7 cut(s)	88, 580, 597, 623, 722, 973, 985
BstV2I	GAAGAC	2 cut(s)	345, 515
BstX2I	RGATCY	1 cut(s)	1060
BstYI	RGATCY	1 cut(s)	1060
BstZ17I	GTATAC	1 cut(s)	211
BsuI	GTATCC	1 cut(s)	835
BsuRI	GGCC	4 cut(s)	60, 488, 1118, 1182
BtgI	CCRYGG	1 cut(s)	994
BtsCI	GGATG	3 cut(s)	1105, 1163, 1184
BtsIMutI	CAGTG	4 cut(s)	11, 284, 639, 894
BtuMI	TCGCGA	1 cut(s)	1134
Cac8I	GCNNGC	6 cut(s)	6, 22, 801, 833, 984, 991
CciI	TCATGA	1 cut(s)	349
CfoI	GCGC	2 cut(s)	604, 831
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	3 cut(s)	132, 487, 1181
Csp6I	GTAC	3 cut(s)	720, 761, 1150
CviAII	CATG	6 cut(s)	128, 172, 350, 371, 804, 1018
CviQI	GTAC	3 cut(s)	720, 761, 1150
DdeI	CTNAG	5 cut(s)	48, 642, 795, 886, 1068
DpnI	GATC	4 cut(s)	216, 429, 861, 1062
DpnII	GATC	4 cut(s)	214, 427, 859, 1060
DraI	TTTAAA	1 cut(s)	867
DraIII	CACNNNGTG	1 cut(s)	17
DrdI	GACNNNNNNGTC	1 cut(s)	445
DseDI	GACNNNNNNGTC	1 cut(s)	445
EaeI	YGGCCR	1 cut(s)	58
EciI	GGCGGA	1 cut(s)	255
Ecl136II	GAGCTC	1 cut(s)	652
Eco130I	CCWWGG	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	654
Eco47I	GGWCC	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	652
Eco57I	CTGAAG	1 cut(s)	837
EcoICRI	GAGCTC	1 cut(s)	652
EcoO109I	RGGNCCY	2 cut(s)	132, 487
EcoT14I	CCWWGG	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	654
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	6 cut(s)	131, 175, 353, 374, 807, 1021
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	6 cut(s)	127, 171, 349, 370, 803, 1017
FblI	GTMKAC	2 cut(s)	210, 437
Fnu4HI	GCNGC	9 cut(s)	9, 77, 269, 586, 594, 612, 711, 974, 987
FokI	GGATG	3 cut(s)	1112, 1150, 1171
FriOI	GRGCYC	1 cut(s)	654
Fsp4HI	GCNGC	9 cut(s)	9, 77, 269, 586, 594, 612, 711, 974, 987
FspBI	CTAG	3 cut(s)	849, 990, 1176
GlaI	GCGC	2 cut(s)	603, 830
GluI	GCNGC	9 cut(s)	9, 77, 269, 586, 594, 612, 711, 974, 987
GsuI	CTGGAG	2 cut(s)	918, 1041
HaeII	RGCGCY	1 cut(s)	832
HaeIII	GGCC	4 cut(s)	60, 488, 1118, 1182
HapII	CCGG	1 cut(s)	21
HhaI	GCGC	2 cut(s)	604, 831
Hin1II	CATG	6 cut(s)	131, 175, 353, 374, 807, 1021
Hin6I	GCGC	2 cut(s)	602, 829
HinP1I	GCGC	2 cut(s)	602, 829
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HinfI	GANTC	3 cut(s)	168, 535, 882
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	2 cut(s)	402, 743
Hpy166II	GTNNAC	6 cut(s)	125, 211, 253, 438, 823, 998
Hpy188I	TCNGA	5 cut(s)	167, 682, 777, 1114, 1192
Hpy188III	TCNNGA	9 cut(s)	156, 218, 316, 350, 542, 1023, 1058, 1133, 1167
Hpy8I	GTNNAC	6 cut(s)	125, 211, 253, 438, 823, 998
HpyAV	CCTTC	3 cut(s)	640, 700, 1170
HpyCH4III	ACNGT	1 cut(s)	288
HpyCH4V	TGCA	8 cut(s)	11, 76, 112, 300, 596, 710, 835, 915
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 118, 277, 599, 608, 979
HpyF3I	CTNAG	5 cut(s)	48, 642, 795, 886, 1068
Hsp92II	CATG	6 cut(s)	131, 175, 353, 374, 807, 1021
HspAI	GCGC	2 cut(s)	602, 829
KroI	GCCGGC	1 cut(s)	20
KroNI	GCCGGC	1 cut(s)	22
Kzo9I	GATC	4 cut(s)	214, 427, 859, 1060
LmnI	GCTCC	4 cut(s)	268, 563, 649, 657
Lsp1109I	GCAGC	7 cut(s)	88, 580, 597, 623, 722, 973, 985
LweI	GCATC	3 cut(s)	368, 924, 997
MaeI	CTAG	3 cut(s)	849, 990, 1176
MaeIII	GTNAC	2 cut(s)	282, 408
MalI	GATC	4 cut(s)	216, 429, 861, 1062
MboI	GATC	4 cut(s)	214, 427, 859, 1060
MboII	GAAGA	5 cut(s)	350, 517, 520, 941, 1148
MflI	RGATCY	1 cut(s)	1060
MhlI	GDGCHC	1 cut(s)	654
MluCI	AATT	4 cut(s)	88, 472, 523, 869
MlyI	GAGTC	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	819
MroNI	GCCGGC	1 cut(s)	20
MseI	TTAA	6 cut(s)	306, 396, 492, 624, 866, 960
MslI	CAYNNNNRTG	1 cut(s)	776
MspA1I	CMGCKG	1 cut(s)	815
MspI	CCGG	1 cut(s)	21
Mva1269I	GAATGC	1 cut(s)	112
MvnI	CGCG	1 cut(s)	1134
MwoI	GCNNNNNNNGC	6 cut(s)	17, 118, 277, 599, 608, 979
NaeI	GCCGGC	1 cut(s)	22
NdeII	GATC	4 cut(s)	214, 427, 859, 1060
NgoMIV	GCCGGC	1 cut(s)	20
NheI	GCTAGC	1 cut(s)	989
NlaIII	CATG	6 cut(s)	131, 175, 353, 374, 807, 1021
NlaIV	GGNNCC	3 cut(s)	19, 133, 456
NmeAIII	GCCGAG	1 cut(s)	36
NmuCI	GTSAC	2 cut(s)	282, 408
NruI	TCGCGA	1 cut(s)	1134
NspI	RCATGY	1 cut(s)	807
NspV	TTCGAA	1 cut(s)	96
PagI	TCATGA	1 cut(s)	349
PctI	GAATGC	1 cut(s)	112
PdiI	GCCGGC	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	535, 882
PkrI	GCNGC	9 cut(s)	10, 78, 270, 587, 595, 613, 712, 975, 988
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PpuMI	RGGWCCY	1 cut(s)	132
PshBI	ATTAAT	1 cut(s)	306
PsiI	TTATAA	1 cut(s)	788
Psp124BI	GAGCTC	1 cut(s)	654
Psp5II	RGGWCCY	1 cut(s)	132
PspN4I	GGNNCC	3 cut(s)	19, 133, 456
PspPI	GGNCC	3 cut(s)	132, 487, 1181
PspPPI	RGGWCCY	1 cut(s)	132
PstI	CTGCAG	1 cut(s)	837
PsuI	RGATCY	1 cut(s)	1060
PvuII	CAGCTG	1 cut(s)	815
RruI	TCGCGA	1 cut(s)	1134
RsaI	GTAC	3 cut(s)	721, 762, 1151
RsaNI	GTAC	3 cut(s)	720, 761, 1150
RseI	CAYNNNNRTG	1 cut(s)	776
SacI	GAGCTC	1 cut(s)	654
SalI	GTCGAC	1 cut(s)	436
SaqAI	TTAA	6 cut(s)	306, 396, 492, 624, 866, 960
SatI	GCNGC	9 cut(s)	9, 77, 269, 586, 594, 612, 711, 974, 987
Sau3AI	GATC	4 cut(s)	214, 427, 859, 1060
Sau96I	GGNCC	3 cut(s)	132, 487, 1181
SchI	GAGTC	1 cut(s)	177
SduI	GDGCHC	1 cut(s)	654
SetI	ASST	9 cut(s)	252, 265, 654, 709, 738, 760, 817, 934, 1162
SfaNI	GCATC	3 cut(s)	368, 924, 997
SfcI	CTRYAG	2 cut(s)	558, 833
SfuI	TTCGAA	1 cut(s)	96
SinI	GGWCC	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	776
SmlI	CTYRAG	2 cut(s)	316, 702
SmoI	CTYRAG	2 cut(s)	316, 702
SpeI	ACTAGT	1 cut(s)	848
Sse9I	AATT	4 cut(s)	88, 472, 523, 869
SsiI	CCGC	3 cut(s)	103, 266, 269
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	3 cut(s)	849, 990, 1176
SstI	GAGCTC	1 cut(s)	654
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	1 cut(s)	288
TaqI	TCGA	4 cut(s)	96, 155, 437, 665
TasI	AATT	4 cut(s)	88, 472, 523, 869
TatI	WGTACW	1 cut(s)	719
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	2 cut(s)	535, 882
Tru1I	TTAA	6 cut(s)	306, 396, 492, 624, 866, 960
Tru9I	TTAA	6 cut(s)	306, 396, 492, 624, 866, 960
TscAI	CASTG	4 cut(s)	18, 291, 646, 894
TseFI	GTSAC	2 cut(s)	282, 408
TseI	GCWGC	8 cut(s)	8, 76, 585, 593, 611, 710, 973, 986
Tsp45I	GTSAC	2 cut(s)	282, 408
TspDTI	ATGAA	7 cut(s)	237, 273, 338, 359, 527, 1006, 1152
TspRI	CASTG	4 cut(s)	18, 291, 646, 894
VpaK11BI	GGWCC	1 cut(s)	132
VspI	ATTAAT	1 cut(s)	306
XapI	RAATTY	1 cut(s)	472
XceI	RCATGY	1 cut(s)	807
XmiI	GTMKAC	2 cut(s)	210, 437
XspI	CTAG	3 cut(s)	849, 990, 1176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.