Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002289.1

Orthogroup ID

OG0005876

Physical Location & Seq

Genomic Coordinates Reverse (-)

83741 .. 90466

Gene Structure 6726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002289.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

atggctttatctcagtttctcggccataatccaatcttgcagccttgtcccaattcgctacgttcacatgggtcctcctcatatttcaactcaaagtcgagaaaagtcagagtcatggtttctgccaacagaaaacaagtagagatagtatacgatcctgatgaaaggataaacaagttggcagataaggtggaaaatgaggctccgccgctttcaaggctgtcactgttctcgccttgcaagattaatgttttcttgagaataactaacaaaagagaagatgggtttcatgacttggcatctctctttcatgtcataagccttggagatgtgattaagttctctttgtcaccctcaaaatccaaagatcgtttgtcgaccaatgtgtcaggggttccccttgatgataggaatttgattatcaaggcccttaatctctacaggaacaagactggtaccgacaatttcttttggattcatcttgataagaaagtgcctacaggagcaggacttggtggtggaagcagcaatgctgcaactgcgctatgggcagcaaatcagtttaatggttgtcttgccactgagaaggagctccaagaatggtcgagtgagattggttcagatgttcccttctttttctctcaaggtgcagcctattgtactggtcgtggtgaggttgttcaaaatattcctccacctgtaccctttgacattccgatggttcttataaagcctcagcaggcatgttcaacagctgaagtttacaagcacctgcagttggatacaactagtagtgttgatcctttaaaattgctggaaagaatctcagtgaatggaatatcgcaagatgtttgcatcaatgatttagaacctccagcatttcaagttcttccatctcttaaaagattgaagcagcgagtacttgctgctagccgtggacaatatgatgctgttttcatgtctggaagtggaagcactattgttgggattggttctccagatcctcctcagtttgtatatgatgacaacgaatacaaggatgtgtttttgtcagaggccaactttctcactcgcgaagaaaatcattggtacagagaaccttcatccagaagtgctagtggcccatcctctgatttttcccagtctattccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009509 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050515

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

384

Amino Acids

42.37

Weight (kDa)

6.67

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26930
fragaria_vesca	FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650
malus_domestica	MD03G1163100.v1.1
prunus_persica	Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1
pyrus_communis	pycom5153684g00180
rosa_chinensis	RchiOBHm_Chr5g0050131
rosa_laevigata	RLG00000034688
rosa_multiflora	Rmu_sc0002289.1_g000014 Rmu_sc0002289.1_g000015
rosa_roxburghii	Rroxscaffold_1G00030810 Rroxscaffold_3G00235880 Rroxscaffold_3G00235890 Rroxscaffold_3G00235900
rosa_rugosa	Rorug05G0259000
rosa_samantha	Rh5AG330800 Rh5BG341500 Rh5CG368000 Rh5DG354300
rosa_wichuraiana	Rw5G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	728
AarI	CACCTGC	1 cut(s)	780
AasI	GACNNNNNNGTC	1 cut(s)	385
Acc36I	ACCTGC	1 cut(s)	780
Acc65I	GGTACC	1 cut(s)	455
AccB1I	GGYRCC	1 cut(s)	455
AccI	GTMKAC	2 cut(s)	150, 377
AccII	CGCG	1 cut(s)	1074
AciI	CCGC	2 cut(s)	206, 209
AclWI	GGATC	3 cut(s)	149, 794, 995
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	412
AcuI	CTGAAG	1 cut(s)	777
AfaI	GTAC	5 cut(s)	457, 661, 702, 921, 1091
AfiI	CCNNNNNNNGG	1 cut(s)	778
AgsI	TTSAA	6 cut(s)	88, 216, 683, 750, 884, 910
AhlI	ACTAGT	1 cut(s)	788
AluBI	AGCT	2 cut(s)	592, 755
AluI	AGCT	2 cut(s)	592, 755
Alw21I	GWGCWC	1 cut(s)	594
AlwI	GGATC	3 cut(s)	149, 794, 995
AoxI	GGCC	4 cut(s)	22, 426, 1056, 1120
ApeKI	GCWGC	7 cut(s)	40, 525, 533, 551, 650, 913, 926
ApoI	RAATTY	1 cut(s)	412
AseI	ATTAAT	1 cut(s)	246
Asp718I	GGTACC	1 cut(s)	455
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	3 cut(s)	72, 427, 1121
AsuHPI	GGTGA	2 cut(s)	342, 683
AsuNHI	GCTAGC	1 cut(s)	929
AvaII	GGWCC	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	455
BanII	GRGCYC	1 cut(s)	594
Bbv12I	GWGCWC	1 cut(s)	594
BbvCI	CCTCAGC	1 cut(s)	735
BbvI	GCAGC	7 cut(s)	52, 520, 537, 563, 662, 913, 925
BccI	CCATC	4 cut(s)	275, 712, 901, 1132
BceAI	ACGGC	1 cut(s)	918
BciVI	GTATCC	1 cut(s)	775
BcuI	ACTAGT	1 cut(s)	788
BfaI	CTAG	3 cut(s)	789, 930, 1116
BfmI	CTRYAG	3 cut(s)	439, 498, 773
BfuAI	ACCTGC	1 cut(s)	780
BfuI	GTATCC	1 cut(s)	775
BisI	GCNGC	8 cut(s)	41, 209, 526, 534, 552, 651, 914, 927
BlsI	GCNGC	8 cut(s)	42, 210, 527, 535, 553, 652, 915, 928
BmcAI	AGTACT	1 cut(s)	921
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	3 cut(s)	72, 427, 1121
BmiI	GGNNCC	4 cut(s)	73, 204, 396, 457
BmrI	ACTGGG	1 cut(s)	1135
BmsI	GCATC	3 cut(s)	308, 864, 937
BmtI	GCTAGC	1 cut(s)	933
BmuI	ACTGGG	1 cut(s)	1135
BpmI	CTGGAG	2 cut(s)	858, 981
Bpu10I	CCTNAGC	1 cut(s)	735
BpuEI	CTTGAG	2 cut(s)	277, 627
BsaJI	CCNNGG	2 cut(s)	322, 934
Bsc4I	CCNNNNNNNGG	1 cut(s)	778
Bse1I	ACTGG	3 cut(s)	457, 667, 1141
Bse3DI	GCAATG	1 cut(s)	535
BseDI	CCNNGG	2 cut(s)	322, 934
BseGI	GGATG	3 cut(s)	1045, 1103, 1124
BseLI	CCNNNNNNNGG	1 cut(s)	778
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	5 cut(s)	26, 573, 749, 840, 1022
BseNI	ACTGG	3 cut(s)	457, 667, 1141
BseRI	GAGGAG	2 cut(s)	67, 996
BseXI	GCAGC	7 cut(s)	52, 520, 537, 563, 662, 913, 925
BsgI	GTGCAG	1 cut(s)	669
Bsh1236I	CGCG	1 cut(s)	1074
BshFI	GGCC	4 cut(s)	24, 428, 1058, 1122
BshNI	GGYRCC	1 cut(s)	455
BsiHKAI	GWGCWC	1 cut(s)	594
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	778
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	4 cut(s)	24, 428, 1058, 1122
Bsp1286I	GDGCHC	1 cut(s)	594
Bsp143I	GATC	4 cut(s)	154, 367, 799, 1000
Bsp68I	TCGCGA	1 cut(s)	1074
BspACI	CCGC	2 cut(s)	206, 209
BspANI	GGCC	4 cut(s)	24, 428, 1058, 1122
BspCNI	CTCAG	5 cut(s)	25, 574, 748, 839, 1021
BspFNI	CGCG	1 cut(s)	1074
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	4 cut(s)	73, 204, 396, 457
BspMAI	CTGCAG	1 cut(s)	777
BspMI	ACCTGC	1 cut(s)	780
BspOI	GCTAGC	1 cut(s)	933
BspPI	GGATC	3 cut(s)	149, 794, 995
BspT107I	GGYRCC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	535
BsrI	ACTGG	3 cut(s)	457, 667, 1141
BssECI	CCNNGG	2 cut(s)	322, 934
BssMI	GATC	4 cut(s)	154, 367, 799, 1000
BssNAI	GTATAC	1 cut(s)	151
BssT1I	CCWWGG	1 cut(s)	322
Bst1107I	GTATAC	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	228
BstC8I	GCNNGC	2 cut(s)	741, 931
BstDEI	CTNAG	5 cut(s)	12, 582, 735, 826, 1008
BstDSI	CCRYGG	1 cut(s)	934
BstF5I	GGATG	3 cut(s)	1045, 1103, 1124
BstFNI	CGCG	1 cut(s)	1074
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	4 cut(s)	157, 370, 802, 1003
BstMBI	GATC	4 cut(s)	154, 367, 799, 1000
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 539, 548
BstNSI	RCATGY	1 cut(s)	747
BstSFI	CTRYAG	3 cut(s)	439, 498, 773
BstUI	CGCG	1 cut(s)	1074
BstV1I	GCAGC	7 cut(s)	52, 520, 537, 563, 662, 913, 925
BstX2I	RGATCY	1 cut(s)	1000
BstYI	RGATCY	1 cut(s)	1000
BstZ17I	GTATAC	1 cut(s)	151
BsuI	GTATCC	1 cut(s)	775
BsuRI	GGCC	4 cut(s)	24, 428, 1058, 1122
BtgI	CCRYGG	1 cut(s)	934
BtsCI	GGATG	3 cut(s)	1045, 1103, 1124
BtsIMutI	CAGTG	3 cut(s)	224, 579, 834
BtuMI	TCGCGA	1 cut(s)	1074
BveI	ACCTGC	1 cut(s)	780
Cac8I	GCNNGC	2 cut(s)	741, 931
CciI	TCATGA	1 cut(s)	289
CfoI	GCGC	1 cut(s)	544
Cfr13I	GGNCC	3 cut(s)	72, 427, 1121
Csp6I	GTAC	5 cut(s)	456, 660, 701, 920, 1090
CviAII	CATG	6 cut(s)	68, 115, 290, 311, 744, 958
CviQI	GTAC	5 cut(s)	456, 660, 701, 920, 1090
DdeI	CTNAG	5 cut(s)	12, 582, 735, 826, 1008
DpnI	GATC	4 cut(s)	156, 369, 801, 1002
DpnII	GATC	4 cut(s)	154, 367, 799, 1000
DraI	TTTAAA	1 cut(s)	807
DrdI	GACNNNNNNGTC	1 cut(s)	385
DseDI	GACNNNNNNGTC	1 cut(s)	385
EaeI	YGGCCR	1 cut(s)	22
EciI	GGCGGA	1 cut(s)	195
Ecl136II	GAGCTC	1 cut(s)	592
Eco130I	CCWWGG	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	594
Eco47I	GGWCC	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	592
Eco57I	CTGAAG	1 cut(s)	777
EcoICRI	GAGCTC	1 cut(s)	592
EcoO109I	RGGNCCY	2 cut(s)	72, 427
EcoT14I	CCWWGG	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	6 cut(s)	71, 118, 293, 314, 747, 961
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	6 cut(s)	67, 114, 289, 310, 743, 957
FblI	GTMKAC	2 cut(s)	150, 377
Fnu4HI	GCNGC	8 cut(s)	41, 209, 526, 534, 552, 651, 914, 927
FokI	GGATG	3 cut(s)	1052, 1090, 1111
FriOI	GRGCYC	1 cut(s)	594
Fsp4HI	GCNGC	8 cut(s)	41, 209, 526, 534, 552, 651, 914, 927
FspBI	CTAG	3 cut(s)	789, 930, 1116
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	8 cut(s)	41, 209, 526, 534, 552, 651, 914, 927
GsuI	CTGGAG	2 cut(s)	858, 981
HaeIII	GGCC	4 cut(s)	24, 428, 1058, 1122
HhaI	GCGC	1 cut(s)	544
Hin1II	CATG	6 cut(s)	71, 118, 293, 314, 747, 961
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HinfI	GANTC	3 cut(s)	111, 475, 822
HphI	GGTGA	2 cut(s)	342, 683
Hpy166II	GTNNAC	5 cut(s)	65, 151, 378, 763, 938
Hpy188I	TCNGA	5 cut(s)	110, 622, 717, 1054, 1132
Hpy188III	TCNNGA	9 cut(s)	99, 158, 256, 290, 482, 963, 998, 1073, 1107
Hpy8I	GTNNAC	5 cut(s)	65, 151, 378, 763, 938
HpyAV	CCTTC	3 cut(s)	580, 640, 1110
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	6 cut(s)	40, 240, 536, 650, 775, 855
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 539, 548
HpyF3I	CTNAG	5 cut(s)	12, 582, 735, 826, 1008
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	6 cut(s)	71, 118, 293, 314, 747, 961
HspAI	GCGC	1 cut(s)	542
KpnI	GGTACC	1 cut(s)	459
Kzo9I	GATC	4 cut(s)	154, 367, 799, 1000
LmnI	GCTCC	4 cut(s)	208, 503, 589, 597
Lsp1109I	GCAGC	7 cut(s)	52, 520, 537, 563, 662, 913, 925
LweI	GCATC	3 cut(s)	308, 864, 937
MaeI	CTAG	3 cut(s)	789, 930, 1116
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	2 cut(s)	222, 348
MalI	GATC	4 cut(s)	156, 369, 801, 1002
MboI	GATC	4 cut(s)	154, 367, 799, 1000
MboII	GAAGA	3 cut(s)	290, 881, 1088
MflI	RGATCY	1 cut(s)	1000
MhlI	GDGCHC	1 cut(s)	594
MluCI	AATT	4 cut(s)	52, 412, 463, 809
MlyI	GAGTC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	759
MseI	TTAA	6 cut(s)	246, 336, 432, 564, 806, 900
MslI	CAYNNNNRTG	1 cut(s)	716
MspA1I	CMGCKG	1 cut(s)	755
MvnI	CGCG	1 cut(s)	1074
MwoI	GCNNNNNNNGC	3 cut(s)	217, 539, 548
NdeII	GATC	4 cut(s)	154, 367, 799, 1000
NheI	GCTAGC	1 cut(s)	929
NlaIII	CATG	6 cut(s)	71, 118, 293, 314, 747, 961
NlaIV	GGNNCC	4 cut(s)	73, 204, 396, 457
NmuCI	GTSAC	2 cut(s)	222, 348
NruI	TCGCGA	1 cut(s)	1074
NspI	RCATGY	1 cut(s)	747
PagI	TCATGA	1 cut(s)	289
PaqCI	CACCTGC	1 cut(s)	780
PfeI	GAWTC	2 cut(s)	475, 822
PkrI	GCNGC	8 cut(s)	42, 210, 527, 535, 553, 652, 915, 928
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PpuMI	RGGWCCY	1 cut(s)	72
PshBI	ATTAAT	1 cut(s)	246
PsiI	TTATAA	1 cut(s)	728
Psp124BI	GAGCTC	1 cut(s)	594
Psp5II	RGGWCCY	1 cut(s)	72
PspN4I	GGNNCC	4 cut(s)	73, 204, 396, 457
PspPI	GGNCC	3 cut(s)	72, 427, 1121
PspPPI	RGGWCCY	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	777
PsuI	RGATCY	1 cut(s)	1000
PvuII	CAGCTG	1 cut(s)	755
RruI	TCGCGA	1 cut(s)	1074
RsaI	GTAC	5 cut(s)	457, 661, 702, 921, 1091
RsaNI	GTAC	5 cut(s)	456, 660, 701, 920, 1090
RseI	CAYNNNNRTG	1 cut(s)	716
SacI	GAGCTC	1 cut(s)	594
SalI	GTCGAC	1 cut(s)	376
SaqAI	TTAA	6 cut(s)	246, 336, 432, 564, 806, 900
SatI	GCNGC	8 cut(s)	41, 209, 526, 534, 552, 651, 914, 927
Sau3AI	GATC	4 cut(s)	154, 367, 799, 1000
Sau96I	GGNCC	3 cut(s)	72, 427, 1121
ScaI	AGTACT	1 cut(s)	921
SchI	GAGTC	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	594
SfaNI	GCATC	3 cut(s)	308, 864, 937
SfcI	CTRYAG	3 cut(s)	439, 498, 773
SinI	GGWCC	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	716
SmlI	CTYRAG	2 cut(s)	256, 642
SmoI	CTYRAG	2 cut(s)	256, 642
SpeI	ACTAGT	1 cut(s)	788
Sse9I	AATT	4 cut(s)	52, 412, 463, 809
SsiI	CCGC	2 cut(s)	206, 209
SspI	AATATT	1 cut(s)	688
SspMI	CTAG	3 cut(s)	789, 930, 1116
SstI	GAGCTC	1 cut(s)	594
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	228
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	3 cut(s)	98, 377, 605
TasI	AATT	4 cut(s)	52, 412, 463, 809
TatI	WGTACW	2 cut(s)	659, 919
TauI	GCSGC	1 cut(s)	211
TfiI	GAWTC	2 cut(s)	475, 822
Tru1I	TTAA	6 cut(s)	246, 336, 432, 564, 806, 900
Tru9I	TTAA	6 cut(s)	246, 336, 432, 564, 806, 900
TscAI	CASTG	3 cut(s)	231, 586, 834
TseFI	GTSAC	2 cut(s)	222, 348
TseI	GCWGC	7 cut(s)	40, 525, 533, 551, 650, 913, 926
Tsp45I	GTSAC	2 cut(s)	222, 348
TspDTI	ATGAA	6 cut(s)	177, 278, 299, 467, 946, 1092
TspRI	CASTG	3 cut(s)	231, 586, 834
VpaK11BI	GGWCC	1 cut(s)	72
VspI	ATTAAT	1 cut(s)	246
XapI	RAATTY	1 cut(s)	412
XceI	RCATGY	1 cut(s)	747
XmiI	GTMKAC	2 cut(s)	150, 377
XspI	CTAG	3 cut(s)	789, 930, 1116
ZrmI	AGTACT	1 cut(s)	921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.