Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002289.1

Orthogroup ID

OG0005876

Physical Location & Seq

Genomic Coordinates Reverse (-)

98855 .. 99576

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002289.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atggtttctgccaacagaaaacaagtagagatagtatacgatcctgatgaaaggataaacaagttggcagataaggtggaaaatgaggctccgccgctttcaaggctgtcactgttctcgccttgcaagattaatgttttcttgagaataactaacaaaagagaagatgggtttcatgacttggcatctctctttcatgtcataagccttggagatgtgattaagttctctttgtcaccctcaaaatccaaagatcgtttgtcgaccaatgtgtcaggggttccccttgatgataggaatttgattatcaaggcccttaatctctacaggaacaagactggtaccgacaatttcttttgggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009509 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050515

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

121

Amino Acids

13.76

Weight (kDa)

9.13

Isoelectric Point (pI)

27.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26930
fragaria_vesca	FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650
malus_domestica	MD03G1163100.v1.1
prunus_persica	Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1
pyrus_communis	pycom5153684g00180
rosa_chinensis	RchiOBHm_Chr5g0050131
rosa_laevigata	RLG00000034688
rosa_multiflora	Rmu_sc0002289.1_g000014 Rmu_sc0002289.1_g000015
rosa_roxburghii	Rroxscaffold_1G00030810 Rroxscaffold_3G00235880 Rroxscaffold_3G00235890 Rroxscaffold_3G00235900
rosa_rugosa	Rorug05G0259000
rosa_samantha	Rh5AG330800 Rh5BG341500 Rh5CG368000 Rh5DG354300
rosa_wichuraiana	Rw5G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	271
Acc65I	GGTACC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	341
AccI	GTMKAC	2 cut(s)	36, 263
AciI	CCGC	2 cut(s)	92, 95
AclWI	GGATC	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	298
AfaI	GTAC	1 cut(s)	343
AgsI	TTSAA	1 cut(s)	102
AlwI	GGATC	1 cut(s)	35
AoxI	GGCC	1 cut(s)	312
ApoI	RAATTY	1 cut(s)	298
AseI	ATTAAT	1 cut(s)	132
Asp718I	GGTACC	1 cut(s)	341
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	228
BanI	GGYRCC	1 cut(s)	341
BccI	CCATC	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	325
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	3 cut(s)	90, 282, 343
BmsI	GCATC	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	343
BseDI	CCNNGG	1 cut(s)	208
BseNI	ACTGG	1 cut(s)	343
BshFI	GGCC	1 cut(s)	314
BshNI	GGYRCC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	314
Bsp143I	GATC	2 cut(s)	40, 253
BspACI	CCGC	2 cut(s)	92, 95
BspANI	GGCC	1 cut(s)	314
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	3 cut(s)	90, 282, 343
BspPI	GGATC	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	2 cut(s)	40, 253
BssNAI	GTATAC	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	208
Bst1107I	GTATAC	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	114
BstKTI	GATC	2 cut(s)	43, 256
BstMBI	GATC	2 cut(s)	40, 253
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstSFI	CTRYAG	1 cut(s)	325
BstZ17I	GTATAC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	314
BtsIMutI	CAGTG	1 cut(s)	110
CciI	TCATGA	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	2 cut(s)	176, 197
CviJI	RGCY	4 cut(s)	89, 106, 207, 314
CviKI_1	RGCY	4 cut(s)	89, 106, 207, 314
CviQI	GTAC	1 cut(s)	342
DpnI	GATC	2 cut(s)	42, 255
DpnII	GATC	2 cut(s)	40, 253
DrdI	GACNNNNNNGTC	1 cut(s)	271
DseDI	GACNNNNNNGTC	1 cut(s)	271
EciI	GGCGGA	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	2 cut(s)	179, 200
FaiI	YATR	5 cut(s)	37, 177, 198, 203, 364
FatI	CATG	2 cut(s)	175, 196
FblI	GTMKAC	2 cut(s)	36, 263
Fnu4HI	GCNGC	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	95
GluI	GCNGC	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	314
Hin1II	CATG	2 cut(s)	179, 200
HincII	GTYRAC	1 cut(s)	264
HindII	GTYRAC	1 cut(s)	264
HphI	GGTGA	1 cut(s)	228
Hpy166II	GTNNAC	2 cut(s)	37, 264
Hpy188III	TCNNGA	3 cut(s)	44, 142, 176
Hpy8I	GTNNAC	2 cut(s)	37, 264
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4V	TGCA	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
Hsp92II	CATG	2 cut(s)	179, 200
KpnI	GGTACC	1 cut(s)	345
Kzo9I	GATC	2 cut(s)	40, 253
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	4 cut(s)	57, 261, 313, 324
LweI	GCATC	1 cut(s)	194
MaeIII	GTNAC	2 cut(s)	108, 234
MalI	GATC	2 cut(s)	42, 255
MboI	GATC	2 cut(s)	40, 253
MboII	GAAGA	1 cut(s)	176
MluCI	AATT	2 cut(s)	298, 349
MnlI	CCTC	2 cut(s)	79, 250
MseI	TTAA	3 cut(s)	132, 222, 318
MwoI	GCNNNNNNNGC	1 cut(s)	103
NdeII	GATC	2 cut(s)	40, 253
NlaIII	CATG	2 cut(s)	179, 200
NlaIV	GGNNCC	3 cut(s)	90, 282, 343
NmuCI	GTSAC	2 cut(s)	108, 234
PagI	TCATGA	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	96
PshBI	ATTAAT	1 cut(s)	132
PspN4I	GGNNCC	3 cut(s)	90, 282, 343
PspPI	GGNCC	1 cut(s)	313
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
SalI	GTCGAC	1 cut(s)	262
SaqAI	TTAA	3 cut(s)	132, 222, 318
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	2 cut(s)	40, 253
Sau96I	GGNCC	1 cut(s)	313
SetI	ASST	1 cut(s)	78
SfaNI	GCATC	1 cut(s)	194
SfcI	CTRYAG	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
Sse9I	AATT	2 cut(s)	298, 349
SsiI	CCGC	2 cut(s)	92, 95
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	114
TaqI	TCGA	1 cut(s)	263
TasI	AATT	2 cut(s)	298, 349
TauI	GCSGC	1 cut(s)	97
Tru1I	TTAA	3 cut(s)	132, 222, 318
Tru9I	TTAA	3 cut(s)	132, 222, 318
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	2 cut(s)	108, 234
Tsp45I	GTSAC	2 cut(s)	108, 234
TspDTI	ATGAA	3 cut(s)	63, 164, 185
TspRI	CASTG	1 cut(s)	117
VspI	ATTAAT	1 cut(s)	132
XapI	RAATTY	1 cut(s)	298
XmiI	GTMKAC	2 cut(s)	36, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.