Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005876

Physical Location & Seq

Genomic Coordinates Reverse (-)

23097714 .. 23098449

Gene Structure 736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00235890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCAGCACCAGCTGTACCGAAGGGAATTGTTCTTGAAGTTCTCAAGTACTATAACTTTGAGGATTGGAGCATATGGGTCAAAACCTACCTGTTGGGGAAAGATCTCTTGGAAGTTGTGGAGTGGGTTCCCCTTGATGATAGGAATTTGATTATCAAGGCCCTTAATCTCTACAGAAGAAGACCGGTAGCGACAATTTCTTTTGGGTATGAAGTGATGCCTAGATTCATCTTGATAAGAAAGTGCCTACCGGAGCGAGGACTTGGTGGTGGAAGCAGCAATGCTGCAACCGCACTATGGGCAGCAAATCGGTTTAATGGTTGTCTTGCCACTAAGAAGGAGCTCCAAGAATGGTCGAGTGAGATTGGTTCAGATGTTCCCTTCTTTTTCTCTCAAGGTGCAGCCTATTGTACTGGTCGTGGTGAGGTTGTTCAAAATATTCCTCCACCTGTACCCTTTGACTTTCCGATGGTTCTTATAAAGCCTCGGCAGGCATGTTCAACGGTGAAGTTTACAAGCGCCTGCAGCTTGGATACAACTAGTAGTGTTGATCCTTTAAAATTGCTGGAAAGAATCTCGGTGAATGGAATATCGCAAGATGTTTGCATCAATGATTTAGAACCTCCAAAGCATTTCAAGTTCTTCCATCTCTTAAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009509 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050515

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

220

Amino Acids

24.67

Weight (kDa)

8.18

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	49 - 132	5.8e-09	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26930
fragaria_vesca	FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650 FvH4_3g27650
malus_domestica	MD03G1163100.v1.1
prunus_persica	Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1 Prupe.4G269400_v2.0.a1
pyrus_communis	pycom5153684g00180
rosa_chinensis	RchiOBHm_Chr5g0050131
rosa_laevigata	RLG00000034688
rosa_multiflora	Rmu_sc0002289.1_g000014 Rmu_sc0002289.1_g000015
rosa_roxburghii	Rroxscaffold_1G00030810 Rroxscaffold_3G00235880 Rroxscaffold_3G00235890 Rroxscaffold_3G00235900
rosa_rugosa	Rorug05G0259000
rosa_samantha	Rh5AG330800 Rh5BG341500 Rh5CG368000 Rh5DG354300
rosa_wichuraiana	Rw5G031260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	479
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	1 cut(s)	545
AcsI	RAATTY	1 cut(s)	145
AfaI	GTAC	4 cut(s)	18, 50, 412, 453
AfiI	CCNNNNNNNGG	2 cut(s)	257, 297
AgeI	ACCGGT	1 cut(s)	184
AgsI	TTSAA	4 cut(s)	38, 434, 501, 637
AhlI	ACTAGT	1 cut(s)	539
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	3 cut(s)	14, 343, 528
AluI	AGCT	3 cut(s)	14, 343, 528
Alw21I	GWGCWC	1 cut(s)	345
AlwI	GGATC	1 cut(s)	545
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	6 cut(s)	5, 276, 284, 302, 401, 525
ApoI	RAATTY	1 cut(s)	145
AsiGI	ACCGGT	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	521
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	3 cut(s)	434, 517, 592
BanII	GRGCYC	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	345
BbvI	GCAGC	6 cut(s)	17, 271, 288, 314, 413, 537
BccI	CCATC	2 cut(s)	463, 654
BciVI	GTATCC	1 cut(s)	526
BcuI	ACTAGT	1 cut(s)	539
BfaI	CTAG	2 cut(s)	222, 540
BfmI	CTRYAG	2 cut(s)	172, 523
BfoI	RGCGCY	1 cut(s)	522
BfuI	GTATCC	1 cut(s)	526
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	6 cut(s)	6, 277, 285, 303, 402, 526
BlsI	GCNGC	6 cut(s)	7, 278, 286, 304, 403, 527
BmcAI	AGTACT	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	129
BmsI	GCATC	2 cut(s)	207, 615
BpiI	GAAGAC	1 cut(s)	187
BpuEI	CTTGAG	2 cut(s)	29, 378
BsaJI	CCNNGG	1 cut(s)	485
BsaWI	WCCGGW	2 cut(s)	184, 250
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 297
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	418
Bse3DI	GCAATG	1 cut(s)	286
BseDI	CCNNGG	1 cut(s)	485
BseLI	CCNNNNNNNGG	2 cut(s)	257, 297
BseMI	GCAATG	1 cut(s)	286
BseNI	ACTGG	1 cut(s)	418
BseXI	GCAGC	6 cut(s)	17, 271, 288, 314, 413, 537
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	161
BshTI	ACCGGT	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	2 cut(s)	185, 251
BslI	CCNNNNNNNGG	2 cut(s)	257, 297
BsnI	GGCC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	103, 550
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	129
BspMAI	CTGCAG	1 cut(s)	527
BspPI	GGATC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	286
BsrFI	RCCGGY	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	418
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	485
BssMI	GATC	2 cut(s)	103, 550
Bst4CI	ACNGT	1 cut(s)	505
BstC8I	GCNNGC	2 cut(s)	492, 523
BstDEI	CTNAG	1 cut(s)	333
BstH2I	RGCGCY	1 cut(s)	522
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	2 cut(s)	106, 553
BstMBI	GATC	2 cut(s)	103, 550
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 290, 299, 525
BstNSI	RCATGY	1 cut(s)	498
BstSFI	CTRYAG	2 cut(s)	172, 523
BstV1I	GCAGC	6 cut(s)	17, 271, 288, 314, 413, 537
BstV2I	GAAGAC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	526
BsuRI	GGCC	1 cut(s)	161
Cac8I	GCNNGC	2 cut(s)	492, 523
CfoI	GCGC	1 cut(s)	521
Cfr10I	RCCGGY	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	160
Csp6I	GTAC	4 cut(s)	17, 49, 411, 452
CspAI	ACCGGT	1 cut(s)	184
CviAII	CATG	1 cut(s)	495
CviJI	RGCY	6 cut(s)	14, 161, 343, 404, 484, 528
CviKI_1	RGCY	6 cut(s)	14, 161, 343, 404, 484, 528
CviQI	GTAC	4 cut(s)	17, 49, 411, 452
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	2 cut(s)	105, 552
DpnII	GATC	2 cut(s)	103, 550
DraI	TTTAAA	1 cut(s)	558
Ecl136II	GAGCTC	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	345
Eco53kI	GAGCTC	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	345
FaeI	CATG	1 cut(s)	498
FaiI	YATR	7 cut(s)	54, 74, 76, 210, 298, 479, 496
FatI	CATG	1 cut(s)	494
FauNDI	CATATG	1 cut(s)	74
Fnu4HI	GCNGC	6 cut(s)	6, 277, 285, 303, 402, 526
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	6 cut(s)	6, 277, 285, 303, 402, 526
FspBI	CTAG	2 cut(s)	222, 540
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	6 cut(s)	6, 277, 285, 303, 402, 526
HaeII	RGCGCY	1 cut(s)	522
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	2 cut(s)	185, 251
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	1 cut(s)	498
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HinfI	GANTC	2 cut(s)	225, 573
HpaII	CCGG	2 cut(s)	185, 251
HphI	GGTGA	3 cut(s)	434, 517, 592
Hpy166II	GTNNAC	1 cut(s)	513
Hpy188I	TCNGA	2 cut(s)	373, 468
Hpy188III	TCNNGA	2 cut(s)	35, 232
Hpy8I	GTNNAC	1 cut(s)	513
HpyAV	CCTTC	3 cut(s)	16, 331, 391
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4V	TGCA	4 cut(s)	287, 401, 525, 606
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 290, 299, 525
HpyF3I	CTNAG	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	498
HspAI	GCGC	1 cut(s)	519
Kzo9I	GATC	2 cut(s)	103, 550
LmnI	GCTCC	4 cut(s)	69, 253, 340, 348
LpnPI	CCDG	9 cut(s)	24, 104, 198, 264, 399, 462, 476, 535, 551
Lsp1109I	GCAGC	6 cut(s)	17, 271, 288, 314, 413, 537
LweI	GCATC	2 cut(s)	207, 615
MaeI	CTAG	2 cut(s)	222, 540
MalI	GATC	2 cut(s)	105, 552
MboI	GATC	2 cut(s)	103, 550
MboII	GAAGA	3 cut(s)	189, 192, 634
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	4 cut(s)	27, 145, 195, 560
MnlI	CCTC	6 cut(s)	55, 251, 418, 453, 495, 633
MseI	TTAA	4 cut(s)	165, 315, 557, 653
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	2 cut(s)	185, 251
MwoI	GCNNNNNNNGC	4 cut(s)	11, 290, 299, 525
NdeI	CATATG	1 cut(s)	74
NdeII	GATC	2 cut(s)	103, 550
NlaIII	CATG	1 cut(s)	498
NlaIV	GGNNCC	1 cut(s)	129
NmeAIII	GCCGAG	1 cut(s)	466
NspI	RCATGY	1 cut(s)	498
PfeI	GAWTC	2 cut(s)	225, 573
PinAI	ACCGGT	1 cut(s)	184
PkrI	GCNGC	6 cut(s)	7, 278, 286, 304, 403, 527
PsiI	TTATAA	1 cut(s)	479
Psp124BI	GAGCTC	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	527
PsuI	RGATCY	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	4 cut(s)	18, 50, 412, 453
RsaNI	GTAC	4 cut(s)	17, 49, 411, 452
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	4 cut(s)	165, 315, 557, 653
SatI	GCNGC	6 cut(s)	6, 277, 285, 303, 402, 526
Sau3AI	GATC	2 cut(s)	103, 550
Sau96I	GGNCC	1 cut(s)	160
ScaI	AGTACT	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	345
SetI	ASST	9 cut(s)	16, 89, 93, 345, 400, 429, 451, 530, 625
SfaNI	GCATC	2 cut(s)	207, 615
SfcI	CTRYAG	2 cut(s)	172, 523
SmlI	CTYRAG	2 cut(s)	44, 393
SmoI	CTYRAG	2 cut(s)	44, 393
SpeI	ACTAGT	1 cut(s)	539
Sse9I	AATT	4 cut(s)	27, 145, 195, 560
SsiI	CCGC	1 cut(s)	291
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	2 cut(s)	222, 540
SstI	GAGCTC	1 cut(s)	345
TaaI	ACNGT	1 cut(s)	505
TaqI	TCGA	1 cut(s)	356
TasI	AATT	4 cut(s)	27, 145, 195, 560
TatI	WGTACW	2 cut(s)	48, 410
TfiI	GAWTC	2 cut(s)	225, 573
Tru1I	TTAA	4 cut(s)	165, 315, 557, 653
Tru9I	TTAA	4 cut(s)	165, 315, 557, 653
TseI	GCWGC	6 cut(s)	5, 276, 284, 302, 401, 525
TspDTI	ATGAA	2 cut(s)	217, 225
XapI	RAATTY	1 cut(s)	145
XceI	RCATGY	1 cut(s)	498
XspI	CTAG	2 cut(s)	222, 540
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.