Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009438

Physical Location & Seq

Genomic Coordinates Forward (+)

12849718 .. 12852092

Gene Structure 2375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30105.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGAGCTCGAAGATCCAACAATGGCAGATTCCACGATTAAGCTAACAGTCAAATTCGGAGGCAAATCAATACCACTTTCGGTATCACCAGATTGTACAGTCAAAGATCTTAAGTCTCAGTTACAACCAATCACCAACGTTCTTCCTCGTGGCCAGAAGCTCATCTTCAAAGGTAAGGTTTTGGTTGAAACGTCGACTTTGAAACAATCTGATGTGGGAAGTGGAGCTAAACTCATGTTAATGGCTTCTCAAGGTCTGCATCAAGGGGAAGGTCCAATACTTAAGGAAGCTAGTATAAGGCCAATCTCTAGAACTGTTGTATCTGATAAAGTAGATCAGAGAAAGCCTAGTGTACTTGTAGACAAGAACCGCACTGATCGATGGAAAGCCACAGGAGTTATTGCTTTAGCTCAAGCCAATTTGAAGGAAATACCTGAAGAAGTGTGGGACTGTGGATCTGGAGTCAGAGTACTTGACATTAGTGAAAACTTCATTAAAGAAGTACCTGCCAAAATCAGCTCCTTTGGTTCTATGCAGAAATTGTTCCTTCAAGGAAATGGTCTGTCCGATGAATCCATTCAATGGGAAGGGATAGCATCTCTGAAGCGCCTGATGCTTCTGTCCATTAGCCATAACAATCTAACTGTTCTGCCATCAGCAATGGGTTCACTGACGTCTCTTAGACAGCTTGATGTCACCAACAACAAGTTGACAAGTCTACCGAATGAGTTAGGACTTCTGACGCAGCTTGAGATTTTGAAAGCCAACAACAACAGAATAACTAGTCTTCCTGAGAGTATCGGAAACTGTTCATTCCTCATGGAGGTTGATCTTTCAGCTAATATTATATCAGAACTTCCCGAGACATTCACCAAACTGCGTAATCTAAAGACGCTGGAGCTGAATAACACGGGATTGAAGACGCTGCCATCGGCTTTATTTAAGATGTGTTTGCAGCTCTCAACTTTAGGTCTCCACAACACAGAGATAACCGTTGAATTTCTCCGCCAGTTCGAGGGATATGATGATTTTGATGAAAGAAGACGTACCAAGCATCAAAAGCAGCTTGATTTTCGTGTTGTGGGATCTGGCCAATTCGACGAAGGCGCTGATAAATCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_4 LRR_8 ubiquitin

Protein Analysis

374

Amino Acids

41.34

Weight (kDa)

7.64

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	15 - 84	2.9e-17	Ubiquitin family
LRR_14	PF23598	155 - 277	2.8e-13	Leucine-rich repeat region
LRR_8	PF13855	192 - 237	1.8e-07	Leucine rich repeat
LRR_8	PF13855	203 - 260	2.2e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30105
fragaria_vesca	FvH4_3g39360 FvH4_3g39360 FvH4_3g39360
malus_domestica	MD03G1062200.v1.1
prunus_persica	Prupe.6G052000_v2.0.a1 Prupe.6G052000_v2.0.a1
pyrus_communis	pycom03g04960
rosa_chinensis	RchiOBHm_Chr5g0070801 RchiOBHm_Chr5g0070821
rosa_laevigata	RLG00000036159
rosa_multiflora	Rmu_sc0002944.1_g000022 Rmu_sc0006500.1_g000001 Rmu_sc0010241.1_g000005
rosa_roxburghii	Rroxscaffold_1G00010350
rosa_rugosa	Rorug05G0408500
rosa_samantha	Rh5AG464000 Rh5BG481800 Rh5CG506300 Rh5CG506500 Rh5DG494700
rosa_wichuraiana	Rw5G043190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	677
Acc36I	ACCTGC	1 cut(s)	514
AccB7I	CCANNNNNTGG	1 cut(s)	582
AccI	GTMKAC	3 cut(s)	194, 360, 718
AciI	CCGC	2 cut(s)	370, 1006
AclI	AACGTT	1 cut(s)	138
AclWI	GGATC	3 cut(s)	8, 463, 1093
AcoI	YGGCCR	2 cut(s)	151, 1090
AcsI	RAATTY	2 cut(s)	53, 998
AcuI	CTGAAG	2 cut(s)	456, 623
AcyI	GRCGYC	1 cut(s)	674
AfaI	GTAC	5 cut(s)	97, 354, 471, 504, 1048
AfiI	CCNNNNNNNGG	3 cut(s)	582, 823, 1015
AflII	CTTAAG	2 cut(s)	110, 281
AgsI	TTSAA	9 cut(s)	169, 188, 202, 424, 551, 581, 760, 919, 998
AhlI	ACTAGT	1 cut(s)	782
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	4 cut(s)	120, 681, 857, 977
AlwI	GGATC	3 cut(s)	8, 463, 1093
Ama87I	CYCGRG	1 cut(s)	860
AoxI	GGCC	3 cut(s)	151, 299, 1090
ApeKI	GCWGC	4 cut(s)	745, 925, 955, 1063
ApoI	RAATTY	2 cut(s)	53, 998
Asp700I	GAANNNNTTC	3 cut(s)	542, 576, 808
AspLEI	GCGC	2 cut(s)	609, 1109
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	4 cut(s)	78, 124, 688, 862
AvaI	CYCGRG	1 cut(s)	860
AvaII	GGWCC	1 cut(s)	272
BaeI	ACNNNNGTAYC	2 cut(s)	303, 336
BalI	TGGCCA	2 cut(s)	153, 1092
BanII	GRGCYC	1 cut(s)	9
BarI	GAAGNNNNNNTAC	2 cut(s)	261, 293
BauI	CACGAG	1 cut(s)	147
BbsI	GAAGAC	3 cut(s)	779, 926, 1048
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	4 cut(s)	757, 912, 967, 1075
BccI	CCATC	3 cut(s)	375, 661, 937
BcoDI	GTCTC	4 cut(s)	120, 681, 857, 977
BcuI	ACTAGT	1 cut(s)	782
BfaI	CTAG	4 cut(s)	291, 309, 348, 783
BfoI	RGCGCY	2 cut(s)	610, 1110
BfrI	CTTAAG	2 cut(s)	110, 281
BfuAI	ACCTGC	1 cut(s)	514
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	4 cut(s)	746, 926, 956, 1064
BlsI	GCNGC	4 cut(s)	747, 927, 957, 1065
BmcAI	AGTACT	1 cut(s)	471
Bme18I	GGWCC	1 cut(s)	272
BmeT110I	CYCGRG	1 cut(s)	860
BmgT120I	GGNCC	1 cut(s)	272
BmsI	GCATC	4 cut(s)	268, 603, 605, 1063
BpiI	GAAGAC	3 cut(s)	779, 926, 1048
BplI	GAGNNNNNCTC	2 cut(s)	216, 248
BpmI	CTGGAG	2 cut(s)	480, 917
BpuEI	CTTGAG	3 cut(s)	234, 396, 770
Bsa29I	ATCGAT	1 cut(s)	379
BsaHI	GRCGYC	1 cut(s)	674
BsaI	GGTCTC	1 cut(s)	977
BsaXI	ACNNNNNCTCC	2 cut(s)	453, 483
Bsc4I	CCNNNNNNNGG	3 cut(s)	582, 823, 1015
Bse1I	ACTGG	1 cut(s)	1009
Bse3DI	GCAATG	1 cut(s)	666
BseCI	ATCGAT	1 cut(s)	379
BseLI	CCNNNNNNNGG	3 cut(s)	582, 823, 1015
BseMI	GCAATG	1 cut(s)	666
BseMII	CTCAG	2 cut(s)	131, 783
BseNI	ACTGG	1 cut(s)	1009
BseXI	GCAGC	4 cut(s)	757, 912, 967, 1075
BshFI	GGCC	3 cut(s)	153, 301, 1092
BshVI	ATCGAT	1 cut(s)	379
BsiHKAI	GWGCWC	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	860
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	3 cut(s)	582, 823, 1015
BsmAI	GTCTC	4 cut(s)	120, 681, 857, 977
BsmBI	CGTCTC	1 cut(s)	681
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	3 cut(s)	153, 301, 1092
Bso31I	GGTCTC	1 cut(s)	977
BsoBI	CYCGRG	1 cut(s)	860
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp1407I	TGTACA	1 cut(s)	95
Bsp143I	GATC	7 cut(s)	13, 106, 334, 376, 455, 829, 1085
BspACI	CCGC	2 cut(s)	370, 1006
BspANI	GGCC	3 cut(s)	153, 301, 1092
BspCNI	CTCAG	2 cut(s)	130, 784
BspDI	ATCGAT	1 cut(s)	379
BspMI	ACCTGC	1 cut(s)	514
BspPI	GGATC	3 cut(s)	8, 463, 1093
BspTI	CTTAAG	2 cut(s)	110, 281
BspTNI	GGTCTC	1 cut(s)	977
BsrDI	GCAATG	1 cut(s)	666
BsrGI	TGTACA	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	1009
BssMI	GATC	7 cut(s)	13, 106, 334, 376, 455, 829, 1085
BssNI	GRCGYC	1 cut(s)	674
BssSI	CACGAG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	147
Bst4CI	ACNGT	7 cut(s)	49, 100, 316, 452, 646, 809, 994
BstACI	GRCGYC	1 cut(s)	674
BstAFI	CTTAAG	2 cut(s)	110, 281
BstAUI	TGTACA	1 cut(s)	95
BstDEI	CTNAG	3 cut(s)	117, 680, 792
BstENI	CCTNNNNNAGG	1 cut(s)	821
BstH2I	RGCGCY	2 cut(s)	610, 1110
BstHHI	GCGC	2 cut(s)	609, 1109
BstKTI	GATC	7 cut(s)	16, 109, 337, 379, 458, 832, 1088
BstMAI	GTCTC	4 cut(s)	120, 681, 857, 977
BstMBI	GATC	7 cut(s)	13, 106, 334, 376, 455, 829, 1085
BstMWI	GCNNNNNNNGC	2 cut(s)	613, 1060
BstV1I	GCAGC	4 cut(s)	757, 912, 967, 1075
BstV2I	GAAGAC	3 cut(s)	779, 926, 1048
BstX2I	RGATCY	4 cut(s)	13, 106, 455, 1085
BstYI	RGATCY	4 cut(s)	13, 106, 455, 1085
Bsu15I	ATCGAT	1 cut(s)	379
BsuRI	GGCC	3 cut(s)	153, 301, 1092
BsuTUI	ATCGAT	1 cut(s)	379
BtsIMutI	CAGTG	2 cut(s)	372, 668
BveI	ACCTGC	1 cut(s)	514
CfoI	GCGC	2 cut(s)	609, 1109
Cfr13I	GGNCC	1 cut(s)	272
ClaI	ATCGAT	1 cut(s)	379
CseI	GACGC	3 cut(s)	751, 901, 931
Csp6I	GTAC	5 cut(s)	96, 353, 470, 503, 1047
CviAII	CATG	2 cut(s)	235, 820
CviQI	GTAC	5 cut(s)	96, 353, 470, 503, 1047
DdeI	CTNAG	3 cut(s)	117, 680, 792
DpnI	GATC	7 cut(s)	15, 108, 336, 378, 457, 831, 1087
DpnII	GATC	7 cut(s)	13, 106, 334, 376, 455, 829, 1085
EaeI	YGGCCR	2 cut(s)	151, 1090
EciI	GGCGGA	1 cut(s)	995
Ecl136II	GAGCTC	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	977
Eco47I	GGWCC	1 cut(s)	272
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	2 cut(s)	456, 623
Eco88I	CYCGRG	1 cut(s)	860
EcoICRI	GAGCTC	1 cut(s)	7
EcoNI	CCTNNNNNAGG	1 cut(s)	821
EcoT38I	GRGCYC	1 cut(s)	9
Esp3I	CGTCTC	1 cut(s)	681
FaeI	CATG	2 cut(s)	238, 823
FaiI	YATR	7 cut(s)	236, 296, 533, 633, 821, 848, 1023
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	2 cut(s)	234, 819
FblI	GTMKAC	3 cut(s)	194, 360, 718
Fnu4HI	GCNGC	4 cut(s)	746, 926, 956, 1064
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	4 cut(s)	746, 926, 956, 1064
FspBI	CTAG	4 cut(s)	291, 309, 348, 783
GlaI	GCGC	2 cut(s)	608, 1108
GluI	GCNGC	4 cut(s)	746, 926, 956, 1064
GsuI	CTGGAG	2 cut(s)	480, 917
HaeII	RGCGCY	2 cut(s)	610, 1110
HaeIII	GGCC	3 cut(s)	153, 301, 1092
HgaI	GACGC	3 cut(s)	751, 901, 931
HhaI	GCGC	2 cut(s)	609, 1109
Hin1I	GRCGYC	1 cut(s)	674
Hin1II	CATG	2 cut(s)	238, 823
Hin6I	GCGC	2 cut(s)	607, 1107
HinP1I	GCGC	2 cut(s)	607, 1107
HincII	GTYRAC	2 cut(s)	195, 711
HindII	GTYRAC	2 cut(s)	195, 711
HinfI	GANTC	3 cut(s)	29, 462, 572
HphI	GGTGA	4 cut(s)	78, 124, 688, 862
Hpy166II	GTNNAC	6 cut(s)	195, 353, 361, 668, 711, 719
Hpy188III	TCNNGA	4 cut(s)	309, 459, 791, 860
Hpy8I	GTNNAC	6 cut(s)	195, 353, 361, 668, 711, 719
Hpy99I	CGWCG	2 cut(s)	196, 1103
HpyAV	CCTTC	5 cut(s)	263, 418, 557, 581, 1097
HpyCH4III	ACNGT	7 cut(s)	49, 100, 316, 452, 646, 809, 994
HpyCH4IV	ACGT	4 cut(s)	138, 191, 674, 1045
HpyCH4V	TGCA	3 cut(s)	259, 535, 955
HpyF10VI	GCNNNNNNNGC	2 cut(s)	613, 1060
HpyF3I	CTNAG	3 cut(s)	117, 680, 792
HpySE526I	ACGT	4 cut(s)	138, 191, 674, 1045
Hsp92I	GRCGYC	1 cut(s)	674
Hsp92II	CATG	2 cut(s)	238, 823
HspAI	GCGC	2 cut(s)	607, 1107
Kzo9I	GATC	7 cut(s)	13, 106, 334, 376, 455, 829, 1085
LmnI	GCTCC	4 cut(s)	4, 224, 524, 898
Lsp1109I	GCAGC	4 cut(s)	757, 912, 967, 1075
LweI	GCATC	4 cut(s)	268, 603, 605, 1063
MaeI	CTAG	4 cut(s)	291, 309, 348, 783
MaeII	ACGT	4 cut(s)	138, 191, 674, 1045
MaeIII	GTNAC	2 cut(s)	120, 694
MalI	GATC	7 cut(s)	15, 108, 336, 378, 457, 831, 1087
MboI	GATC	7 cut(s)	13, 106, 334, 376, 455, 829, 1085
MboII	GAAGA	7 cut(s)	23, 134, 157, 449, 779, 931, 1053
MflI	RGATCY	4 cut(s)	13, 106, 455, 1085
MhlI	GDGCHC	1 cut(s)	9
MlsI	TGGCCA	2 cut(s)	153, 1092
MluCI	AATT	5 cut(s)	53, 418, 539, 998, 1094
MluNI	TGGCCA	2 cut(s)	153, 1092
MlyI	GAGTC	1 cut(s)	471
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	5 cut(s)	53, 156, 817, 827, 1009
Mox20I	TGGCCA	2 cut(s)	153, 1092
MroXI	GAANNNNTTC	3 cut(s)	542, 576, 808
MscI	TGGCCA	2 cut(s)	153, 1092
MseI	TTAA	6 cut(s)	39, 111, 239, 282, 495, 942
MslI	CAYNNNNRTG	1 cut(s)	239
Msp20I	TGGCCA	2 cut(s)	153, 1092
MspCI	CTTAAG	2 cut(s)	110, 281
MwoI	GCNNNNNNNGC	2 cut(s)	613, 1060
NdeII	GATC	7 cut(s)	13, 106, 334, 376, 455, 829, 1085
NlaIII	CATG	2 cut(s)	238, 823
NmuCI	GTSAC	1 cut(s)	694
PdmI	GAANNNNTTC	3 cut(s)	542, 576, 808
PfeI	GAWTC	2 cut(s)	29, 572
PflMI	CCANNNNNTGG	1 cut(s)	582
PkrI	GCNGC	4 cut(s)	747, 927, 957, 1065
PleI	GAGTC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	470
Psp124BI	GAGCTC	1 cut(s)	9
Psp1406I	AACGTT	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	272
PsuI	RGATCY	4 cut(s)	13, 106, 455, 1085
RsaI	GTAC	5 cut(s)	97, 354, 471, 504, 1048
RsaNI	GTAC	5 cut(s)	96, 353, 470, 503, 1047
RseI	CAYNNNNRTG	1 cut(s)	239
SacI	GAGCTC	1 cut(s)	9
SalI	GTCGAC	1 cut(s)	193
SaqAI	TTAA	6 cut(s)	39, 111, 239, 282, 495, 942
SatI	GCNGC	4 cut(s)	746, 926, 956, 1064
Sau3AI	GATC	7 cut(s)	13, 106, 334, 376, 455, 829, 1085
Sau96I	GGNCC	1 cut(s)	272
ScaI	AGTACT	1 cut(s)	471
SchI	GAGTC	1 cut(s)	471
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	4 cut(s)	268, 603, 605, 1063
SinI	GGWCC	1 cut(s)	272
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	5 cut(s)	110, 249, 281, 411, 749
SmoI	CTYRAG	5 cut(s)	110, 249, 281, 411, 749
SpeI	ACTAGT	1 cut(s)	782
Sse9I	AATT	5 cut(s)	53, 418, 539, 998, 1094
SsiI	CCGC	2 cut(s)	370, 1006
SspI	AATATT	1 cut(s)	844
SspMI	CTAG	4 cut(s)	291, 309, 348, 783
SstI	GAGCTC	1 cut(s)	9
TaaI	ACNGT	7 cut(s)	49, 100, 316, 452, 646, 809, 994
TaiI	ACGT	4 cut(s)	141, 194, 677, 1048
TaqI	TCGA	5 cut(s)	9, 194, 379, 1014, 1098
TasI	AATT	5 cut(s)	53, 418, 539, 998, 1094
TatI	WGTACW	3 cut(s)	95, 352, 469
TfiI	GAWTC	2 cut(s)	29, 572
Tru1I	TTAA	6 cut(s)	39, 111, 239, 282, 495, 942
Tru9I	TTAA	6 cut(s)	39, 111, 239, 282, 495, 942
TscAI	CASTG	2 cut(s)	379, 675
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	4 cut(s)	745, 925, 955, 1063
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	4 cut(s)	481, 585, 801, 1050
TspRI	CASTG	2 cut(s)	379, 675
Van91I	CCANNNNNTGG	1 cut(s)	582
Vha464I	CTTAAG	2 cut(s)	110, 281
VpaK11BI	GGWCC	1 cut(s)	272
XagI	CCTNNNNNAGG	1 cut(s)	821
XapI	RAATTY	2 cut(s)	53, 998
XbaI	TCTAGA	1 cut(s)	308
XmiI	GTMKAC	3 cut(s)	194, 360, 718
XmnI	GAANNNNTTC	3 cut(s)	542, 576, 808
XspI	CTAG	4 cut(s)	291, 309, 348, 783
ZraI	GACGTC	1 cut(s)	675
ZrmI	AGTACT	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.