Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009438

Physical Location & Seq

Genomic Coordinates Reverse (-)

3649527 .. 3653275

Gene Structure 3749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G052000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGAGAGTAGTGTCACCGGCGGTGAGGATAGCGGAGGCAACATAAGCCTCAGCGTGAAGTTCAGTGGCAGAACCATACCCATCACAAATCTTTCTCCGGACTCAACCATCAAAGACCTCAAGTCCCTTCTGCAACCTCTCACCAATGTCCTCCCTCGTGGCCAAAAGCTCATTTGCAAAGGGAAGCTTTTGGTGGATGGAATGACACTGAAGGAGTCTGAGGTCGCTAATGGCTCCAGGATCATGCTCATGGCTTCTCAGGGCTTGCATCAAGGGGACGGGCCCATCCTAAAACAAGCTCCCACACGCCCCATTTCCAGAGCCAACAATGCTAATACATTGGGAAAAGAAAAGACAGAAGTTTCTGTTGATAAGAACCGGTTGGATCGATGGAAAGCTACTGGGGTTATTGGACTCCGTGACTACAACTTGAGGGCTATACCCGATGAAGTGTGGGCTTGTGGAGCTTCTGCAAGAGTCATTGAACTCAGCAATAATGCTATTCCAGTGGTACCTGCCAAGATTGGCTGTCTAAGTTCCTTGCAGAAATTGTTCCTCTCTGCAAATGATATTTTGGACAATTCTATTAACTGGGAAGCTCTAGTATCTTTGAAGCTTCTAACTGTTCTGTCTCTGGACCAAAACCATTTAACGACTTTGCCACCTGCATTCGGCTTGTTGACATCACTGAGGCAATTTCACGTTGCAAACAACAAATTGTCTAGCCTCCCAAATGAAATAGGACTTTTGACTAAGCTTGAAGTTCTGAAAGTCAACAATAACAGGATAAGCACCATGCCTACATGCATAGGGGACTGTATTGGTCTTATTGAGATTGATGTTTCATCAAATCTTCTATCCGAGTTGCCCGAGACATTTGGCAATTTGCATAATCTAAAGTCTTTGTGTCTCAGCAACAATGGGTTGAAATCCCTTCCTTCTACGCTATTCAAAAAGTGCCTACAGCTCACAACACTTGATTTGCACAACACAGAGATAACCATGGATGTTCTTCGTCAGACGGAAGGATGGGAAAGTTTTGATGAACGCCGTCGCTTGAAGCATCAGAAGCAACTGGACTTCCGAGTTGTGAACTCCGGTGCATTTGATGAAGGTGCTGATAAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_4 LRR_8 ubiquitin

Protein Analysis

377

Amino Acids

41.05

Weight (kDa)

8.4

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30105
fragaria_vesca	FvH4_3g39360 FvH4_3g39360 FvH4_3g39360
malus_domestica	MD03G1062200.v1.1
prunus_persica	Prupe.6G052000_v2.0.a1 Prupe.6G052000_v2.0.a1
pyrus_communis	pycom03g04960
rosa_chinensis	RchiOBHm_Chr5g0070801 RchiOBHm_Chr5g0070821
rosa_laevigata	RLG00000036159
rosa_multiflora	Rmu_sc0002944.1_g000022 Rmu_sc0006500.1_g000001 Rmu_sc0010241.1_g000005
rosa_roxburghii	Rroxscaffold_1G00010350
rosa_rugosa	Rorug05G0408500
rosa_samantha	Rh5AG464000 Rh5BG481800 Rh5CG506300 Rh5CG506500 Rh5DG494700
rosa_wichuraiana	Rw5G043190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	673
Acc36I	ACCTGC	2 cut(s)	523, 673
Acc65I	GGTACC	1 cut(s)	511
AccB1I	GGYRCC	1 cut(s)	511
AccIII	TCCGGA	1 cut(s)	97
AciI	CCGC	2 cut(s)	21, 33
AclWI	GGATC	2 cut(s)	248, 393
AcoI	YGGCCR	1 cut(s)	160
AcuI	CTGAAG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	513
AfiI	CCNNNNNNNGG	1 cut(s)	671
AgeI	ACCGGT	1 cut(s)	378
AgsI	TTSAA	6 cut(s)	485, 613, 761, 928, 952, 1060
AhdI	GACNNNNNGTC	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	236
Alw26I	GTCTC	3 cut(s)	636, 866, 914
AlwI	GGATC	2 cut(s)	248, 393
Ama87I	CYCGRG	1 cut(s)	869
Aor13HI	TCCGGA	1 cut(s)	97
AoxI	GGCC	2 cut(s)	160, 281
ApaI	GGGCCC	1 cut(s)	285
AsiGI	ACCGGT	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	551
Asp718I	GGTACC	1 cut(s)	511
AspS9I	GGNCC	3 cut(s)	281, 282, 637
AsuHPI	GGTGA	3 cut(s)	7, 35, 133
AvaI	CYCGRG	1 cut(s)	869
AvaII	GGWCC	1 cut(s)	637
BaeGI	GKGCMC	1 cut(s)	285
BalI	TGGCCA	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	511
BanII	GRGCYC	1 cut(s)	285
BauI	CACGAG	1 cut(s)	156
BbvCI	CCTCAGC	1 cut(s)	50
BccI	CCATC	6 cut(s)	89, 116, 191, 293, 384, 1023
BceAI	ACGGC	1 cut(s)	1035
BciT130I	CCWGG	1 cut(s)	238
BcoDI	GTCTC	3 cut(s)	636, 866, 914
BfaI	CTAG	2 cut(s)	602, 723
BfmI	CTRYAG	1 cut(s)	962
BfuAI	ACCTGC	2 cut(s)	523, 673
Bme1390I	CCNGG	1 cut(s)	238
Bme18I	GGWCC	1 cut(s)	637
BmeRI	GACNNNNNGTC	1 cut(s)	121
BmeT110I	CYCGRG	1 cut(s)	869
BmgT120I	GGNCC	3 cut(s)	281, 282, 637
BmiI	GGNNCC	3 cut(s)	235, 283, 513
BmrFI	CCNGG	1 cut(s)	238
BmrI	ACTGGG	2 cut(s)	411, 601
BmsI	GCATC	2 cut(s)	277, 1072
BmuI	ACTGGG	2 cut(s)	411, 601
BpmI	CTGGAG	1 cut(s)	220
Bpu10I	CCTNAGC	1 cut(s)	50
BpuEI	CTTGAG	2 cut(s)	104, 451
Bsa29I	ATCGAT	1 cut(s)	388
BsaJI	CCNNGG	1 cut(s)	1002
BsaWI	WCCGGW	3 cut(s)	97, 378, 1097
Bsc4I	CCNNNNNNNGG	1 cut(s)	671
Bse118I	RCCGGY	2 cut(s)	17, 378
Bse1I	ACTGG	4 cut(s)	406, 506, 596, 1080
BseAI	TCCGGA	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	238
BseCI	ATCGAT	1 cut(s)	388
BseDI	CCNNGG	1 cut(s)	1002
BseGI	GGATG	4 cut(s)	202, 285, 1012, 1034
BseLI	CCNNNNNNNGG	1 cut(s)	671
BseMII	CTCAG	6 cut(s)	64, 210, 272, 502, 680, 925
BseNI	ACTGG	4 cut(s)	406, 506, 596, 1080
BseSI	GKGCMC	1 cut(s)	285
BshFI	GGCC	2 cut(s)	162, 283
BshNI	GGYRCC	1 cut(s)	511
BshTI	ACCGGT	1 cut(s)	378
BshVI	ATCGAT	1 cut(s)	388
BsiHKCI	CYCGRG	1 cut(s)	869
BsiSI	CCGG	4 cut(s)	18, 98, 379, 1098
BslFI	GGGAC	3 cut(s)	109, 290, 827
BslI	CCNNNNNNNGG	1 cut(s)	671
BsmAI	GTCTC	3 cut(s)	636, 866, 914
BsmFI	GGGAC	3 cut(s)	109, 290, 827
BsmI	GAATGC	1 cut(s)	668
BsnI	GGCC	2 cut(s)	162, 283
BsoBI	CYCGRG	1 cut(s)	869
Bsp120I	GGGCCC	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp13I	TCCGGA	1 cut(s)	97
Bsp143I	GATC	2 cut(s)	240, 385
Bsp19I	CCATGG	1 cut(s)	1002
BspACI	CCGC	2 cut(s)	21, 33
BspANI	GGCC	2 cut(s)	162, 283
BspCNI	CTCAG	6 cut(s)	63, 211, 271, 501, 681, 924
BspDI	ATCGAT	1 cut(s)	388
BspEI	TCCGGA	1 cut(s)	97
BspLI	GGNNCC	3 cut(s)	235, 283, 513
BspMI	ACCTGC	2 cut(s)	523, 673
BspPI	GGATC	2 cut(s)	248, 393
BspT107I	GGYRCC	1 cut(s)	511
BsrFI	RCCGGY	2 cut(s)	17, 378
BsrI	ACTGG	4 cut(s)	406, 506, 596, 1080
BssAI	RCCGGY	2 cut(s)	17, 378
BssECI	CCNNGG	1 cut(s)	1002
BssMI	GATC	2 cut(s)	240, 385
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	1002
Bst2BI	CACGAG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	238
Bst4CI	ACNGT	2 cut(s)	625, 818
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	8 cut(s)	50, 219, 258, 488, 533, 689, 753, 911
BstDSI	CCRYGG	1 cut(s)	1002
BstF5I	GGATG	4 cut(s)	202, 285, 1012, 1034
BstKTI	GATC	2 cut(s)	243, 388
BstMAI	GTCTC	3 cut(s)	636, 866, 914
BstMBI	GATC	2 cut(s)	240, 385
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 329, 464, 1069
BstNI	CCWGG	1 cut(s)	238
BstNSI	RCATGY	1 cut(s)	807
BstSCI	CCNGG	1 cut(s)	236
BstSFI	CTRYAG	1 cut(s)	962
BstSLI	GKGCMC	1 cut(s)	285
Bsu15I	ATCGAT	1 cut(s)	388
BsuRI	GGCC	2 cut(s)	162, 283
BsuTUI	ATCGAT	1 cut(s)	388
BtgI	CCRYGG	1 cut(s)	1002
BtsCI	GGATG	4 cut(s)	202, 285, 1012, 1034
BtsIMutI	CAGTG	4 cut(s)	70, 206, 513, 686
BveI	ACCTGC	2 cut(s)	523, 673
Cac8I	GCNNGC	1 cut(s)	266
Cfr10I	RCCGGY	2 cut(s)	17, 378
Cfr13I	GGNCC	3 cut(s)	281, 282, 637
ClaI	ATCGAT	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	512
CspAI	ACCGGT	1 cut(s)	378
CviAII	CATG	5 cut(s)	244, 250, 796, 804, 1003
CviQI	GTAC	1 cut(s)	512
DdeI	CTNAG	8 cut(s)	50, 219, 258, 488, 533, 689, 753, 911
DpnI	GATC	2 cut(s)	242, 387
DpnII	GATC	2 cut(s)	240, 385
DriI	GACNNNNNGTC	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	160
Eam1105I	GACNNNNNGTC	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	1002
Eco24I	GRGCYC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	637
Eco57I	CTGAAG	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	869
EcoRII	CCWGG	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	1002
EcoT22I	ATGCAT	1 cut(s)	809
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	1002
FaeI	CATG	5 cut(s)	247, 253, 799, 807, 1006
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FaqI	GGGAC	3 cut(s)	109, 290, 827
FatI	CATG	5 cut(s)	243, 249, 795, 803, 1002
FokI	GGATG	4 cut(s)	209, 272, 1019, 1041
FriOI	GRGCYC	1 cut(s)	285
FspBI	CTAG	2 cut(s)	602, 723
GsuI	CTGGAG	1 cut(s)	220
HaeIII	GGCC	2 cut(s)	162, 283
HapII	CCGG	4 cut(s)	18, 98, 379, 1098
Hin1II	CATG	5 cut(s)	247, 253, 799, 807, 1006
HincII	GTYRAC	2 cut(s)	681, 775
HindII	GTYRAC	2 cut(s)	681, 775
HindIII	AAGCTT	3 cut(s)	185, 614, 755
HinfI	GANTC	4 cut(s)	101, 215, 414, 477
HpaII	CCGG	4 cut(s)	18, 98, 379, 1098
HphI	GGTGA	3 cut(s)	7, 35, 133
Hpy166II	GTNNAC	3 cut(s)	681, 775, 1093
Hpy188I	TCNGA	6 cut(s)	220, 768, 862, 1020, 1068, 1085
Hpy188III	TCNNGA	3 cut(s)	98, 318, 635
Hpy8I	GTNNAC	3 cut(s)	681, 775, 1093
Hpy99I	CGWCG	1 cut(s)	1056
HpyAV	CCTTC	6 cut(s)	137, 205, 944, 948, 1019, 1106
HpyCH4III	ACNGT	2 cut(s)	625, 818
HpyCH4IV	ACGT	1 cut(s)	702
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 329, 464, 1069
HpyF3I	CTNAG	8 cut(s)	50, 219, 258, 488, 533, 689, 753, 911
HpySE526I	ACGT	1 cut(s)	702
Hsp92II	CATG	5 cut(s)	247, 253, 799, 807, 1006
Kpn2I	TCCGGA	1 cut(s)	97
KpnI	GGTACC	1 cut(s)	515
Kzo9I	GATC	2 cut(s)	240, 385
LmnI	GCTCC	3 cut(s)	239, 304, 464
LweI	GCATC	2 cut(s)	277, 1072
MaeI	CTAG	2 cut(s)	602, 723
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	2 cut(s)	13, 419
MalI	GATC	2 cut(s)	242, 387
MboI	GATC	2 cut(s)	240, 385
MboII	GAAGA	2 cut(s)	845, 1004
MhlI	GDGCHC	1 cut(s)	285
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	5 cut(s)	548, 580, 695, 716, 883
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	4 cut(s)	95, 224, 408, 486
MmeI	TCCRAC	1 cut(s)	363
Mox20I	TGGCCA	1 cut(s)	162
Mph1103I	ATGCAT	1 cut(s)	809
MroI	TCCGGA	1 cut(s)	97
MroXI	GAANNNNTTC	1 cut(s)	551
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	2 cut(s)	588, 650
MslI	CAYNNNNRTG	1 cut(s)	248
Msp20I	TGGCCA	1 cut(s)	162
MspI	CCGG	4 cut(s)	18, 98, 379, 1098
MspR9I	CCNGG	1 cut(s)	238
Mva1269I	GAATGC	1 cut(s)	668
MvaI	CCWGG	1 cut(s)	238
MwoI	GCNNNNNNNGC	4 cut(s)	45, 329, 464, 1069
NcoI	CCATGG	1 cut(s)	1002
NdeII	GATC	2 cut(s)	240, 385
NlaIII	CATG	5 cut(s)	247, 253, 799, 807, 1006
NlaIV	GGNNCC	3 cut(s)	235, 283, 513
NmuCI	GTSAC	2 cut(s)	13, 419
NsiI	ATGCAT	1 cut(s)	809
NspI	RCATGY	1 cut(s)	807
PaqCI	CACCTGC	1 cut(s)	673
PctI	GAATGC	1 cut(s)	668
PdmI	GAANNNNTTC	1 cut(s)	551
PfoI	TCCNGGA	1 cut(s)	236
PinAI	ACCGGT	1 cut(s)	378
PleI	GAGTC	4 cut(s)	95, 223, 408, 485
PpsI	GAGTC	4 cut(s)	95, 223, 408, 485
Psp6I	CCWGG	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	236
PspN4I	GGNNCC	3 cut(s)	235, 283, 513
PspOMI	GGGCCC	1 cut(s)	281
PspPI	GGNCC	3 cut(s)	281, 282, 637
RsaI	GTAC	1 cut(s)	513
RsaNI	GTAC	1 cut(s)	512
RseI	CAYNNNNRTG	1 cut(s)	248
SaqAI	TTAA	2 cut(s)	588, 650
Sau3AI	GATC	2 cut(s)	240, 385
Sau96I	GGNCC	3 cut(s)	281, 282, 637
SchI	GAGTC	4 cut(s)	95, 224, 408, 486
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	285
SfaNI	GCATC	2 cut(s)	277, 1072
SfcI	CTRYAG	1 cut(s)	962
SgrAI	CRCCGGYG	1 cut(s)	17
SinI	GGWCC	1 cut(s)	637
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	2 cut(s)	119, 430
SmoI	CTYRAG	2 cut(s)	119, 430
Sse9I	AATT	5 cut(s)	548, 580, 695, 716, 883
SsiI	CCGC	2 cut(s)	21, 33
SspMI	CTAG	2 cut(s)	602, 723
StyD4I	CCNGG	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	1002
TaaI	ACNGT	2 cut(s)	625, 818
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	1 cut(s)	388
TasI	AATT	5 cut(s)	548, 580, 695, 716, 883
Tru1I	TTAA	2 cut(s)	588, 650
Tru9I	TTAA	2 cut(s)	588, 650
TscAI	CASTG	4 cut(s)	70, 213, 513, 693
TseFI	GTSAC	2 cut(s)	13, 419
Tsp45I	GTSAC	2 cut(s)	13, 419
TspDTI	ATGAA	5 cut(s)	462, 750, 834, 1059, 1125
TspGWI	ACGGA	2 cut(s)	407, 1037
TspRI	CASTG	4 cut(s)	70, 213, 513, 693
VpaK11BI	GGWCC	1 cut(s)	637
XceI	RCATGY	1 cut(s)	807
XmnI	GAANNNNTTC	1 cut(s)	551
XspI	CTAG	2 cut(s)	602, 723
Zsp2I	ATGCAT	1 cut(s)	809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.