Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002944.1

Orthogroup ID

OG0009438

Physical Location & Seq

Genomic Coordinates Reverse (-)

95308 .. 101395

Gene Structure 6088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002944.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atgtacaggaaagatgatgtctgggtgggtcgtctaatttcgggttattcgttaccaatggaagatccgagcctgtccaagacagaaacaaaaacaaaagatattggtggaacttggaaacaatcaatcaaagtagcacttgaggctacgcaatcggctttccctggaggagagccttatgttctggctattcccgaggaagtctggggggattctagaacttctgcaagagttcttgacctcagcaacaatgttattcaagaagtacctgccttgattgcctgtatgaattccctgcagaaacttttactcgattcaaacgatatatcggacgactctgttagctgggaagcactaaaatctttaaagtctttaactgttctttctcttaaccaaaaccgtttaactagattgtcatcggatctgggctggttgccatcattaaggcaacttcatgttgcgaacaacatgttgtctggcctcccaagtgaattgcgatatctgcctaagcttgaagttctgaaagtcaacaataacaggatcaccaccattcctccatggataggggaccttatttctcttattgaggttgatctttcatcaaatcttctgtcagatttgcccgagacatttagcaatttgcataatctaaagtccctgtctctcagtaataatgggctgaaatctctcccttcttcgctattcaaaatgtgcctaatgctcacaagacttgacttgcacaacacagaaataaccatggatatccttcgtcagattgagggatgggaaaactttgatgaacgccgtcgcttgaagcaacagaagaaactggatttttttgttgtgggctctgctgcatttgatgaaggtgctgataaaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 ubiquitin

Protein Analysis

294

Amino Acids

32.94

Weight (kDa)

5.39

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30105
fragaria_vesca	FvH4_3g39360 FvH4_3g39360 FvH4_3g39360
malus_domestica	MD03G1062200.v1.1
prunus_persica	Prupe.6G052000_v2.0.a1 Prupe.6G052000_v2.0.a1
pyrus_communis	pycom03g04960
rosa_chinensis	RchiOBHm_Chr5g0070801 RchiOBHm_Chr5g0070821
rosa_laevigata	RLG00000036159
rosa_multiflora	Rmu_sc0002944.1_g000022 Rmu_sc0006500.1_g000001 Rmu_sc0010241.1_g000005
rosa_roxburghii	Rroxscaffold_1G00010350
rosa_rugosa	Rorug05G0408500
rosa_samantha	Rh5AG464000 Rh5BG481800 Rh5CG506300 Rh5CG506500 Rh5DG494700
rosa_wichuraiana	Rw5G043190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	277
AclWI	GGATC	3 cut(s)	59, 429, 548
AcsI	RAATTY	1 cut(s)	289
AfaI	GTAC	2 cut(s)	5, 267
AfiI	CCNNNNNNNGG	1 cut(s)	563
AflIII	ACRYGT	1 cut(s)	468
AgsI	TTSAA	5 cut(s)	260, 318, 515, 706, 814
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	3 cut(s)	345, 511, 882
AluI	AGCT	3 cut(s)	345, 511, 882
Alw26I	GTCTC	2 cut(s)	620, 666
AlwI	GGATC	3 cut(s)	59, 429, 548
Ama87I	CYCGRG	2 cut(s)	194, 623
AoxI	GGCC	1 cut(s)	478
ApeKI	GCWGC	1 cut(s)	854
ApoI	RAATTY	1 cut(s)	289
ArsI	GACNNNNNNTTYG	2 cut(s)	596, 628
AspS9I	GGNCC	1 cut(s)	568
AsuHPI	GGTGA	1 cut(s)	535
AvaI	CYCGRG	2 cut(s)	194, 623
AvaII	GGWCC	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	851
BbvCI	CCTCAGC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	841
BccI	CCATC	2 cut(s)	445, 777
BceAI	ACGGC	1 cut(s)	789
BciT130I	CCWGG	1 cut(s)	165
BcoDI	GTCTC	2 cut(s)	620, 666
BfaI	CTAG	2 cut(s)	216, 408
BfmI	CTRYAG	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	277
BisI	GCNGC	1 cut(s)	855
BlsI	GCNGC	1 cut(s)	856
Bme1390I	CCNGG	1 cut(s)	165
Bme18I	GGWCC	1 cut(s)	568
BmeT110I	CYCGRG	2 cut(s)	194, 623
BmgT120I	GGNCC	1 cut(s)	568
BmiI	GGNNCC	1 cut(s)	569
BmrFI	CCNGG	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	186
Bpu10I	CCTNAGC	2 cut(s)	242, 507
BpuEI	CTTGAG	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	415
BsaJI	CCNNGG	4 cut(s)	163, 195, 557, 756
BsaXI	ACNNNNNCTCC	2 cut(s)	538, 568
Bsc4I	CCNNNNNNNGG	1 cut(s)	563
Bse1I	ACTGG	1 cut(s)	834
Bse8I	GATNNNNATC	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	4 cut(s)	163, 195, 557, 756
BseGI	GGATG	1 cut(s)	788
BseJI	GATNNNNATC	1 cut(s)	415
BseLI	CCNNNNNNNGG	1 cut(s)	563
BseMII	CTCAG	2 cut(s)	256, 679
BseNI	ACTGG	1 cut(s)	834
BseRI	GAGGAG	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	841
BseYI	CCCAGC	1 cut(s)	345
BshFI	GGCC	1 cut(s)	480
BsiHKCI	CYCGRG	2 cut(s)	194, 623
BslFI	GGGAC	2 cut(s)	581, 640
BslI	CCNNNNNNNGG	1 cut(s)	563
BsmAI	GTCTC	2 cut(s)	620, 666
BsmFI	GGGAC	2 cut(s)	581, 640
BsnI	GGCC	1 cut(s)	480
BsoBI	CYCGRG	2 cut(s)	194, 623
Bsp1286I	GDGCHC	1 cut(s)	851
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	4 cut(s)	64, 421, 540, 592
Bsp19I	CCATGG	2 cut(s)	557, 756
BspANI	GGCC	1 cut(s)	480
BspCNI	CTCAG	2 cut(s)	255, 678
BspLI	GGNNCC	1 cut(s)	569
BspMAI	CTGCAG	1 cut(s)	300
BspMI	ACCTGC	1 cut(s)	277
BspPI	GGATC	3 cut(s)	59, 429, 548
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	834
BssECI	CCNNGG	4 cut(s)	163, 195, 557, 756
BssMI	GATC	4 cut(s)	64, 421, 540, 592
BssT1I	CCWWGG	2 cut(s)	557, 756
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	2 cut(s)	379, 401
BstAUI	TGTACA	1 cut(s)	3
BstDEI	CTNAG	3 cut(s)	242, 507, 665
BstDSI	CCRYGG	2 cut(s)	557, 756
BstF5I	GGATG	1 cut(s)	788
BstKTI	GATC	4 cut(s)	67, 424, 543, 595
BstMAI	GTCTC	2 cut(s)	620, 666
BstMBI	GATC	4 cut(s)	64, 421, 540, 592
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 278, 502
BstNI	CCWGG	1 cut(s)	165
BstNSI	RCATGY	1 cut(s)	472
BstSCI	CCNGG	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	296
BstV1I	GCAGC	1 cut(s)	841
BstX2I	RGATCY	2 cut(s)	64, 421
BstYI	RGATCY	2 cut(s)	64, 421
BsuRI	GGCC	1 cut(s)	480
BtgI	CCRYGG	2 cut(s)	557, 756
BtsCI	GGATG	1 cut(s)	788
BveI	ACCTGC	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	568
Csp6I	GTAC	2 cut(s)	4, 266
CviAII	CATG	4 cut(s)	455, 469, 558, 757
CviQI	GTAC	2 cut(s)	4, 266
DdeI	CTNAG	3 cut(s)	242, 507, 665
DpnI	GATC	4 cut(s)	66, 423, 542, 594
DpnII	GATC	4 cut(s)	64, 421, 540, 592
DraI	TTTAAA	1 cut(s)	366
Eco130I	CCWWGG	2 cut(s)	557, 756
Eco24I	GRGCYC	1 cut(s)	851
Eco32I	GATATC	2 cut(s)	500, 763
Eco47I	GGWCC	1 cut(s)	568
Eco88I	CYCGRG	2 cut(s)	194, 623
EcoO109I	RGGNCCY	1 cut(s)	568
EcoRI	GAATTC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	163
EcoRV	GATATC	2 cut(s)	500, 763
EcoT14I	CCWWGG	2 cut(s)	557, 756
EcoT38I	GRGCYC	1 cut(s)	851
ErhI	CCWWGG	2 cut(s)	557, 756
FaeI	CATG	4 cut(s)	458, 472, 561, 760
FaiI	YATR	8 cut(s)	180, 287, 326, 456, 470, 559, 645, 758
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FaqI	GGGAC	2 cut(s)	581, 640
FatI	CATG	4 cut(s)	454, 468, 557, 756
Fnu4HI	GCNGC	1 cut(s)	855
FokI	GGATG	1 cut(s)	795
FriOI	GRGCYC	1 cut(s)	851
Fsp4HI	GCNGC	1 cut(s)	855
FspBI	CTAG	2 cut(s)	216, 408
GluI	GCNGC	1 cut(s)	855
GsaI	CCCAGC	1 cut(s)	349
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	480
Hin1II	CATG	4 cut(s)	458, 472, 561, 760
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	3 cut(s)	212, 314, 335
HphI	GGTGA	1 cut(s)	535
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188I	TCNGA	6 cut(s)	69, 331, 421, 522, 616, 774
Hpy188III	TCNNGA	4 cut(s)	194, 216, 236, 260
Hpy8I	GTNNAC	1 cut(s)	529
Hpy99I	CGWCG	1 cut(s)	810
HpyAV	CCTTC	3 cut(s)	702, 776, 860
HpyCH4III	ACNGT	2 cut(s)	379, 401
HpyCH4V	TGCA	5 cut(s)	227, 298, 643, 739, 857
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 278, 502
HpyF3I	CTNAG	3 cut(s)	242, 507, 665
Hsp92II	CATG	4 cut(s)	458, 472, 561, 760
Kzo9I	GATC	4 cut(s)	64, 421, 540, 592
Lsp1109I	GCAGC	1 cut(s)	841
MaeI	CTAG	2 cut(s)	216, 408
MaeIII	GTNAC	1 cut(s)	51
MalI	GATC	4 cut(s)	66, 423, 542, 594
MboI	GATC	4 cut(s)	64, 421, 540, 592
MboII	GAAGA	4 cut(s)	74, 599, 687, 835
MflI	RGATCY	2 cut(s)	64, 421
MhlI	GDGCHC	1 cut(s)	851
MluCI	AATT	4 cut(s)	36, 289, 491, 637
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	8 cut(s)	136, 161, 190, 251, 491, 564, 580, 772
MseI	TTAA	5 cut(s)	365, 374, 390, 404, 443
MspR9I	CCNGG	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	3 cut(s)	143, 278, 502
NcoI	CCATGG	2 cut(s)	557, 756
NdeII	GATC	4 cut(s)	64, 421, 540, 592
NlaIII	CATG	4 cut(s)	458, 472, 561, 760
NlaIV	GGNNCC	1 cut(s)	569
NspI	RCATGY	1 cut(s)	472
PciI	ACATGT	1 cut(s)	468
PcsI	WCGNNNNNNNCGW	2 cut(s)	47, 318
PfeI	GAWTC	2 cut(s)	212, 314
PkrI	GCNGC	1 cut(s)	856
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
PpuMI	RGGWCCY	1 cut(s)	568
PscI	ACATGT	1 cut(s)	468
Psp5II	RGGWCCY	1 cut(s)	568
Psp6I	CCWGG	1 cut(s)	163
PspFI	CCCAGC	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	569
PspPI	GGNCC	1 cut(s)	568
PspPPI	RGGWCCY	1 cut(s)	568
PstI	CTGCAG	1 cut(s)	300
PsuI	RGATCY	2 cut(s)	64, 421
RsaI	GTAC	2 cut(s)	5, 267
RsaNI	GTAC	2 cut(s)	4, 266
SaqAI	TTAA	5 cut(s)	365, 374, 390, 404, 443
SatI	GCNGC	1 cut(s)	855
Sau3AI	GATC	4 cut(s)	64, 421, 540, 592
Sau96I	GGNCC	1 cut(s)	568
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	165
SduI	GDGCHC	1 cut(s)	851
SetI	ASST	8 cut(s)	243, 271, 347, 513, 573, 591, 871, 884
SfcI	CTRYAG	1 cut(s)	296
SinI	GGWCC	1 cut(s)	568
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	4 cut(s)	36, 289, 491, 637
SspMI	CTAG	2 cut(s)	216, 408
StyD4I	CCNGG	1 cut(s)	163
StyI	CCWWGG	2 cut(s)	557, 756
TaaI	ACNGT	2 cut(s)	379, 401
TaqI	TCGA	1 cut(s)	312
TasI	AATT	4 cut(s)	36, 289, 491, 637
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	212, 314
Tru1I	TTAA	5 cut(s)	365, 374, 390, 404, 443
Tru9I	TTAA	5 cut(s)	365, 374, 390, 404, 443
TseI	GCWGC	1 cut(s)	854
TspDTI	ATGAA	5 cut(s)	302, 443, 588, 813, 879
VpaK11BI	GGWCC	1 cut(s)	568
XapI	RAATTY	1 cut(s)	289
XbaI	TCTAGA	1 cut(s)	215
XceI	RCATGY	1 cut(s)	472
XspI	CTAG	2 cut(s)	216, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.