Rh5BG481800

Leucine-rich repeats, typical (most populated) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0009438
Physical Location & Seq
Forward (+)
76646907 .. 76652719
5813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG481800.1

Sequence Viewer

Length: 1005 bp
ATGAATCACTCAATGCAGGAGTATGCATGGGGTGTTTATGATCCATTGACAGCCAATAATAGCAAGCACATTGACATTTGTGTGCCAAATTCTTCAGATTCTCGACCTGTTCAAACTAGCACCACAAAAAAACCAATTAGGATGGATGGACCTATTCTTAAACAAGCTCAGAGTCGCCCCATTTCTAGAGACAACAATGCTGATAGATCCAATAAAGGAAAGGCGAAAAAAGCTGCTGTTGATAAGAATAGGTTGGAACGATGGAAGGCTACTGGAGTTATAGGACTCAGTGAGTGTAACTTGAAGGCTATACCCGAGGAAGTCTGGGGGGATTCTAGAACTTCTGCAAGAGTTCTTGACCTCAGCAACAATGTTATTCAAGAAGTACCAGCCTTGATTGGCTGTATGAATTCCTTGCAGAAACTTTTACTCGATTCAAACGATATATCGGATGACTCTGTTAGCTGGGAAGCACTAAAATCTTTAAAGTCTTTAACTGTTCTTTCTCTGAACCAAAACCGTTTAACTAGATTGTCATCGGATCTGGGCTGGTTGCCATCACTAAGGCAACTTCATGTTGCGAATAACATGTTGTCTAGCCTCCCAAGTGAATTGCGATATCTGCCTAAGCTTGAAGTTCTGAAAGTTAACAATAACAGGATCACCACCATTCCTCCATGGATAGGGGACCTTATTTCTCTTATTGAGGTTGATCTTTCATCAAATCTTCTGTCAGATTTGCCCGAGACATTTAGCAATTTGCATAATCTAAAGTCCCTGTCTCTCAGTAATAATGGATTGAAATCTCTCCCTTCTTCGCTATTCAAAATGTGCCTAATGCTCACAAGACTTGACTTGCACAACACAGAAATAACCATGGATATCCTTCGTCAGATTGAGGGATGGGAAAACTTTGATGAACGCCGTCGCTTGAAGCAACAGAAGAAACTGGATTTTCGTGTTGTGGGCTCTGCTGCATTTGATGAAGGTGCTGATAAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 ubiquitin

Protein Analysis

334

Amino Acids

37.47

Weight (kDa)

8.79

Isoelectric Point (pI)

49.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 95 - 149 7.6e-06 Leucine rich repeat
LRR_14 PF23598 95 - 194 3e-06 Leucine-rich repeat region
LRR_8 PF13855 153 - 198 1.1e-06 Leucine rich repeat
LRR_14 PF23598 153 - 238 4.9e-08 Leucine-rich repeat region
LRR_4 PF12799 163 - 203 1.7e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 186 - 244 2.6e-07 Leucine rich repeat
LRR_4 PF12799 186 - 227 5.3e-08 Leucine Rich repeats (2 copies)
LRR_8 PF13855 209 - 267 4.1e-10 Leucine rich repeat
LRR_4 PF12799 209 - 248 1.4e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 35, 201, 549, 668
AcsI RAATTY 2 cut(s) 88, 409
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 1 cut(s) 387
AfiI CCNNNNNNNGG 1 cut(s) 683
AflIII ACRYGT 1 cut(s) 588
AgsI TTSAA 8 cut(s) 113, 304, 380, 438, 635, 802, 826, 934
AluBI AGCT 5 cut(s) 167, 233, 465, 631, 1002
AluI AGCT 5 cut(s) 167, 233, 465, 631, 1002
Alw26I GTCTC 3 cut(s) 183, 740, 786
AlwI GGATC 4 cut(s) 35, 201, 549, 668
Ama87I CYCGRG 2 cut(s) 314, 743
ApeKI GCWGC 2 cut(s) 233, 974
ApoI RAATTY 2 cut(s) 88, 409
ArsI GACNNNNNNTTYG 2 cut(s) 716, 748
AspS9I GGNCC 2 cut(s) 149, 688
AsuHPI GGTGA 1 cut(s) 655
AvaI CYCGRG 2 cut(s) 314, 743
AvaII GGWCC 2 cut(s) 149, 688
BanII GRGCYC 1 cut(s) 971
BbvCI CCTCAGC 1 cut(s) 362
BbvI GCAGC 2 cut(s) 220, 961
BccI CCATC 5 cut(s) 136, 140, 255, 565, 897
BceAI ACGGC 1 cut(s) 909
BcoDI GTCTC 3 cut(s) 183, 740, 786
BfaI CTAG 5 cut(s) 117, 186, 336, 528, 597
BisI GCNGC 2 cut(s) 234, 975
BlsI GCNGC 2 cut(s) 235, 976
Bme18I GGWCC 2 cut(s) 149, 688
BmeT110I CYCGRG 2 cut(s) 314, 743
BmgT120I GGNCC 2 cut(s) 149, 688
BmiI GGNNCC 1 cut(s) 689
BpmI CTGGAG 1 cut(s) 294
Bpu10I CCTNAGC 2 cut(s) 362, 627
BsaBI GATNNNNATC 2 cut(s) 535, 802
BsaJI CCNNGG 3 cut(s) 315, 677, 876
BsaXI ACNNNNNCTCC 2 cut(s) 658, 688
Bsc4I CCNNNNNNNGG 1 cut(s) 683
Bse1I ACTGG 2 cut(s) 277, 954
Bse8I GATNNNNATC 2 cut(s) 535, 802
BseDI CCNNGG 3 cut(s) 315, 677, 876
BseGI GGATG 4 cut(s) 147, 151, 457, 908
BseJI GATNNNNATC 2 cut(s) 535, 802
BseLI CCNNNNNNNGG 1 cut(s) 683
BseMII CTCAG 4 cut(s) 182, 301, 376, 799
BseNI ACTGG 2 cut(s) 277, 954
BseXI GCAGC 2 cut(s) 220, 961
BseYI CCCAGC 1 cut(s) 465
BsiHKCI CYCGRG 2 cut(s) 314, 743
BslFI GGGAC 2 cut(s) 701, 760
BslI CCNNNNNNNGG 1 cut(s) 683
BsmAI GTCTC 3 cut(s) 183, 740, 786
BsmFI GGGAC 2 cut(s) 701, 760
BsoBI CYCGRG 2 cut(s) 314, 743
Bsp1286I GDGCHC 1 cut(s) 971
Bsp143I GATC 5 cut(s) 40, 206, 541, 660, 712
Bsp19I CCATGG 2 cut(s) 677, 876
BspCNI CTCAG 4 cut(s) 181, 300, 375, 798
BspLI GGNNCC 1 cut(s) 689
BspPI GGATC 4 cut(s) 35, 201, 549, 668
BsrI ACTGG 2 cut(s) 277, 954
BssECI CCNNGG 3 cut(s) 315, 677, 876
BssMI GATC 5 cut(s) 40, 206, 541, 660, 712
BssT1I CCWWGG 2 cut(s) 677, 876
Bst4CI ACNGT 2 cut(s) 499, 521
BstC8I GCNNGC 1 cut(s) 65
BstDEI CTNAG 6 cut(s) 168, 287, 362, 563, 627, 785
BstDSI CCRYGG 2 cut(s) 677, 876
BstF5I GGATG 4 cut(s) 147, 151, 457, 908
BstKTI GATC 5 cut(s) 43, 209, 544, 663, 715
BstMAI GTCTC 3 cut(s) 183, 740, 786
BstMBI GATC 5 cut(s) 40, 206, 541, 660, 712
BstMWI GCNNNNNNNGC 2 cut(s) 230, 622
BstNSI RCATGY 1 cut(s) 592
BstV1I GCAGC 2 cut(s) 220, 961
BstX2I RGATCY 2 cut(s) 206, 541
BstYI RGATCY 2 cut(s) 206, 541
BtgI CCRYGG 2 cut(s) 677, 876
BtsCI GGATG 4 cut(s) 147, 151, 457, 908
BtsIMutI CAGTG 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 65
Cfr13I GGNCC 2 cut(s) 149, 688
Csp6I GTAC 1 cut(s) 386
CviAII CATG 5 cut(s) 27, 575, 589, 678, 877
CviQI GTAC 1 cut(s) 386
DdeI CTNAG 6 cut(s) 168, 287, 362, 563, 627, 785
DpnI GATC 5 cut(s) 42, 208, 543, 662, 714
DpnII GATC 5 cut(s) 40, 206, 541, 660, 712
DraI TTTAAA 1 cut(s) 486
Eco130I CCWWGG 2 cut(s) 677, 876
Eco24I GRGCYC 1 cut(s) 971
Eco32I GATATC 2 cut(s) 620, 883
Eco47I GGWCC 2 cut(s) 149, 688
Eco57I CTGAAG 1 cut(s) 78
Eco88I CYCGRG 2 cut(s) 314, 743
EcoO109I RGGNCCY 1 cut(s) 688
EcoRI GAATTC 1 cut(s) 409
EcoRV GATATC 2 cut(s) 620, 883
EcoT14I CCWWGG 2 cut(s) 677, 876
EcoT22I ATGCAT 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 971
ErhI CCWWGG 2 cut(s) 677, 876
FaeI CATG 5 cut(s) 30, 578, 592, 681, 880
FaqI GGGAC 2 cut(s) 701, 760
FatI CATG 5 cut(s) 26, 574, 588, 677, 876
Fnu4HI GCNGC 2 cut(s) 234, 975
FokI GGATG 4 cut(s) 154, 158, 464, 915
FriOI GRGCYC 1 cut(s) 971
Fsp4HI GCNGC 2 cut(s) 234, 975
FspBI CTAG 5 cut(s) 117, 186, 336, 528, 597
GluI GCNGC 2 cut(s) 234, 975
GsaI CCCAGC 1 cut(s) 469
GsuI CTGGAG 1 cut(s) 294
Hin1II CATG 5 cut(s) 30, 578, 592, 681, 880
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HindIII AAGCTT 1 cut(s) 629
HinfI GANTC 7 cut(s) 4, 98, 172, 285, 332, 434, 455
HpaI GTTAAC 1 cut(s) 649
HphI GGTGA 1 cut(s) 655
Hpy166II GTNNAC 1 cut(s) 649
Hpy188I TCNGA 8 cut(s) 97, 171, 451, 510, 541, 642, 736, 894
Hpy188III TCNNGA 5 cut(s) 102, 186, 336, 356, 380
Hpy8I GTNNAC 1 cut(s) 649
Hpy99I CGWCG 1 cut(s) 930
HpyAV CCTTC 5 cut(s) 259, 298, 822, 896, 980
HpyCH4III ACNGT 2 cut(s) 499, 521
HpyCH4V TGCA 7 cut(s) 16, 26, 347, 418, 763, 859, 977
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 622
HpyF3I CTNAG 6 cut(s) 168, 287, 362, 563, 627, 785
Hsp92II CATG 5 cut(s) 30, 578, 592, 681, 880
KspAI GTTAAC 1 cut(s) 649
Kzo9I GATC 5 cut(s) 40, 206, 541, 660, 712
Lsp1109I GCAGC 2 cut(s) 220, 961
MaeI CTAG 5 cut(s) 117, 186, 336, 528, 597
MaeIII GTNAC 1 cut(s) 296
MalI GATC 5 cut(s) 42, 208, 543, 662, 714
MboI GATC 5 cut(s) 40, 206, 541, 660, 712
MboII GAAGA 4 cut(s) 84, 719, 807, 955
MflI RGATCY 2 cut(s) 206, 541
MhlI GDGCHC 1 cut(s) 971
MluCI AATT 5 cut(s) 88, 135, 409, 611, 757
MlyI GAGTC 3 cut(s) 181, 279, 449
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 6 cut(s) 310, 371, 611, 684, 700, 892
Mph1103I ATGCAT 1 cut(s) 28
MseI TTAA 5 cut(s) 159, 485, 494, 524, 648
MslI CAYNNNNRTG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 230, 622
NcoI CCATGG 2 cut(s) 677, 876
NdeII GATC 5 cut(s) 40, 206, 541, 660, 712
NlaIII CATG 5 cut(s) 30, 578, 592, 681, 880
NlaIV GGNNCC 1 cut(s) 689
NsiI ATGCAT 1 cut(s) 28
NspI RCATGY 1 cut(s) 592
PciI ACATGT 1 cut(s) 588
PcsI WCGNNNNNNNCGW 1 cut(s) 438
PfeI GAWTC 4 cut(s) 4, 98, 332, 434
PkrI GCNGC 2 cut(s) 235, 976
PleI GAGTC 3 cut(s) 180, 279, 449
PpsI GAGTC 3 cut(s) 180, 279, 449
PpuMI RGGWCCY 1 cut(s) 688
PscI ACATGT 1 cut(s) 588
Psp5II RGGWCCY 1 cut(s) 688
PspFI CCCAGC 1 cut(s) 465
PspN4I GGNNCC 1 cut(s) 689
PspPI GGNCC 2 cut(s) 149, 688
PspPPI RGGWCCY 1 cut(s) 688
PsuI RGATCY 2 cut(s) 206, 541
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
RseI CAYNNNNRTG 1 cut(s) 80
SaqAI TTAA 5 cut(s) 159, 485, 494, 524, 648
SatI GCNGC 2 cut(s) 234, 975
Sau3AI GATC 5 cut(s) 40, 206, 541, 660, 712
Sau96I GGNCC 2 cut(s) 149, 688
SchI GAGTC 3 cut(s) 181, 279, 449
SduI GDGCHC 1 cut(s) 971
SinI GGWCC 2 cut(s) 149, 688
SmiMI CAYNNNNRTG 1 cut(s) 80
Sse9I AATT 5 cut(s) 88, 135, 409, 611, 757
SspMI CTAG 5 cut(s) 117, 186, 336, 528, 597
StyI CCWWGG 2 cut(s) 677, 876
TaaI ACNGT 2 cut(s) 499, 521
TaqI TCGA 2 cut(s) 103, 432
TasI AATT 5 cut(s) 88, 135, 409, 611, 757
TfiI GAWTC 4 cut(s) 4, 98, 332, 434
Tru1I TTAA 5 cut(s) 159, 485, 494, 524, 648
Tru9I TTAA 5 cut(s) 159, 485, 494, 524, 648
TscAI CASTG 1 cut(s) 295
TseI GCWGC 2 cut(s) 233, 974
TspDTI ATGAA 6 cut(s) 17, 422, 563, 708, 933, 999
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 2 cut(s) 149, 688
XapI RAATTY 2 cut(s) 88, 409
XbaI TCTAGA 2 cut(s) 185, 335
XceI RCATGY 1 cut(s) 592
XspI CTAG 5 cut(s) 117, 186, 336, 528, 597
Zsp2I ATGCAT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.