Rh5CG506300

Leucine-rich repeats, typical (most populated) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0009438
Physical Location & Seq
Forward (+)
70356315 .. 70463346
107032 bp
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UTR
Exon/CDS
Intron
Rh5CG506300.1

Sequence Viewer

Length: 1146 bp
ATGGAGACCGGTGTCACCGGCGCTGACGTCAGCGGAGCGACCACCACCACCATAAGCCTGAGTGTGAAGTTCAGTGGCCGAACCATACCCATCACAAATCTCTCACCGGACTCGACCATCAAGGACCTCAAGGCCCTTCTTCAACCTCTCACCAATGTCCTCCCTCGCGGCCAAAAGCTCATATCCAAAGGGAAGCTTTTGGTGGATGCAATGACGCTGAGGGAGTCTGAGATCACTAATGGGGCCAAGATCATGCTCATGGCTTCTCAGGGTTTGCACCAAGGGGATGGACCTATTCTTAAACAAGCTCAGAGTCGCCCCATTTCTAGAGACAACAATGCTGATAGATCCAATAAAGGAAAGGCGAAAAAAGCTGCTGTTGATAAGAATAGGTTGGAACGATGGAAGGCTACTGGAGTTATAGGACTCAGTGAGTGTAACTTGAAGGCTATACCCGAGGAAGTCTGGGGGGATTCTAGAACTTCTGCAAGAGTTCTTGACCTCAGCAACAATGTTATTCAAGAAGTACCAGCCTTGATTGGCTGTATGAATTCCTTGCAGAAACTTTTACTCGATTCAAACGATATATCGGATGACTCTGTTAGCTGGGAAGCACTAAAATCTTTAAAGTCTTTAACTGTTCTTTCTCTGAACCAAAACCGTTTAACTAGATTGTCATCGGATCTGGGCTGGTTGCCATCACTAAGGCAACTTCATGTTGCGAATAACATGTTGTCTAGCCTCCCAAGTGAATTGCGATATCTGCCTAAGCTTGAAGTTCTGAAAGTTAACAATAACAGGATCACCACCATTCCTCCATGGATAGGGGACCTTATTTCTCTTATTGAGGTTGATCTTTCATCAAATCTTCTGTCAGATTTGCCCGAGACATTTAGCAATTTGCATAATCTAAAGTCCCTGTCTCTCAGTAATAATGGGCTGAAATCTCTCCCTTCTTCACTATTCAAAATGTGCCTAATGCTCACAAGACTTGACTTGCACAACACAGAAATAACCATGGATATCCTTCGTCAGATTGAGGGATGGGAAAACTTTGATGAACGCCGTCGCTTGAAGCAACAGAAGAAACTGGATTTTCGTGTTGTGGGCTCTGCTGCATTTGATGAAGGTGCTGATAAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 ubiquitin

Protein Analysis

381

Amino Acids

42.0

Weight (kDa)

9.12

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 21 - 90 1e-14 Ubiquitin family
LRR_8 PF13855 142 - 196 9.3e-06 Leucine rich repeat
LRR_14 PF23598 142 - 241 3.9e-06 Leucine-rich repeat region
LRR_14 PF23598 199 - 284 5.8e-08 Leucine-rich repeat region
LRR_8 PF13855 200 - 245 1.2e-06 Leucine rich repeat
LRR_4 PF12799 210 - 250 2.3e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 233 - 291 2.7e-07 Leucine rich repeat
LRR_4 PF12799 233 - 274 5.9e-08 Leucine Rich repeats (2 copies)
LRR_8 PF13855 256 - 314 4.3e-10 Leucine rich repeat
LRR_4 PF12799 256 - 295 1.7e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 30
AccII CGCG 1 cut(s) 168
AciI CCGC 2 cut(s) 33, 168
AclWI GGATC 3 cut(s) 342, 690, 809
AcoI YGGCCR 2 cut(s) 76, 169
AcsI RAATTY 1 cut(s) 550
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 1 cut(s) 528
AfiI CCNNNNNNNGG 1 cut(s) 824
AflIII ACRYGT 1 cut(s) 729
AgeI ACCGGT 1 cut(s) 8
AgsI TTSAA 7 cut(s) 143, 445, 521, 579, 776, 967, 1075
AluBI AGCT 7 cut(s) 178, 196, 308, 374, 606, 772, 1143
AluI AGCT 7 cut(s) 178, 196, 308, 374, 606, 772, 1143
Alw26I GTCTC 3 cut(s) 324, 881, 927
AlwI GGATC 3 cut(s) 342, 690, 809
Ama87I CYCGRG 2 cut(s) 455, 884
AoxI GGCC 4 cut(s) 76, 132, 169, 243
ApeKI GCWGC 2 cut(s) 374, 1115
ApoI RAATTY 1 cut(s) 550
ArsI GACNNNNNNTTYG 2 cut(s) 857, 889
AsiGI ACCGGT 1 cut(s) 8
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 5 cut(s) 124, 133, 243, 290, 829
AsuHPI GGTGA 4 cut(s) 7, 96, 142, 796
AvaI CYCGRG 2 cut(s) 455, 884
AvaII GGWCC 3 cut(s) 124, 290, 829
BanII GRGCYC 1 cut(s) 1112
BbvCI CCTCAGC 2 cut(s) 218, 503
BbvI GCAGC 2 cut(s) 361, 1102
BccI CCATC 6 cut(s) 98, 125, 281, 396, 706, 1038
BceAI ACGGC 1 cut(s) 1050
BcoDI GTCTC 3 cut(s) 324, 881, 927
BfaI CTAG 4 cut(s) 327, 477, 669, 738
BfoI RGCGCY 1 cut(s) 24
BisI GCNGC 3 cut(s) 169, 375, 1116
BlsI GCNGC 3 cut(s) 170, 376, 1117
Bme18I GGWCC 3 cut(s) 124, 290, 829
BmeT110I CYCGRG 2 cut(s) 455, 884
BmgT120I GGNCC 5 cut(s) 124, 133, 243, 290, 829
BmiI GGNNCC 2 cut(s) 244, 830
BmsI GCATC 1 cut(s) 196
BoxI GACNNNNGTC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 435
Bpu10I CCTNAGC 3 cut(s) 218, 503, 768
BpuEI CTTGAG 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 676
BsaHI GRCGYC 1 cut(s) 27
BsaJI CCNNGG 4 cut(s) 280, 456, 818, 1017
BsaWI WCCGGW 2 cut(s) 8, 106
BsaXI ACNNNNNCTCC 2 cut(s) 799, 829
Bsc4I CCNNNNNNNGG 1 cut(s) 824
Bse118I RCCGGY 2 cut(s) 8, 17
Bse1I ACTGG 2 cut(s) 418, 1095
Bse3DI GCAATG 1 cut(s) 216
Bse8I GATNNNNATC 1 cut(s) 676
BseDI CCNNGG 4 cut(s) 280, 456, 818, 1017
BseGI GGATG 4 cut(s) 211, 292, 598, 1049
BseJI GATNNNNATC 1 cut(s) 676
BseLI CCNNNNNNNGG 1 cut(s) 824
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 8 cut(s) 50, 209, 219, 281, 323, 442, 517, 940
BseNI ACTGG 2 cut(s) 418, 1095
BseXI GCAGC 2 cut(s) 361, 1102
BseYI CCCAGC 1 cut(s) 606
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 4 cut(s) 78, 134, 171, 245
BshTI ACCGGT 1 cut(s) 8
BsiHKCI CYCGRG 2 cut(s) 455, 884
BsiSI CCGG 3 cut(s) 9, 18, 107
BslFI GGGAC 2 cut(s) 842, 901
BslI CCNNNNNNNGG 1 cut(s) 824
BsmAI GTCTC 3 cut(s) 324, 881, 927
BsmFI GGGAC 2 cut(s) 842, 901
BsnI GGCC 4 cut(s) 78, 134, 171, 245
BsoBI CYCGRG 2 cut(s) 455, 884
Bsp1286I GDGCHC 1 cut(s) 1112
Bsp143I GATC 6 cut(s) 231, 249, 347, 682, 801, 853
Bsp19I CCATGG 2 cut(s) 818, 1017
BspACI CCGC 2 cut(s) 33, 168
BspANI GGCC 4 cut(s) 78, 134, 171, 245
BspCNI CTCAG 8 cut(s) 51, 210, 220, 280, 322, 441, 516, 939
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 2 cut(s) 244, 830
BspPI GGATC 3 cut(s) 342, 690, 809
BsrDI GCAATG 1 cut(s) 216
BsrFI RCCGGY 2 cut(s) 8, 17
BsrI ACTGG 2 cut(s) 418, 1095
BssAI RCCGGY 2 cut(s) 8, 17
BssECI CCNNGG 4 cut(s) 280, 456, 818, 1017
BssMI GATC 6 cut(s) 231, 249, 347, 682, 801, 853
BssNI GRCGYC 1 cut(s) 27
BssT1I CCWWGG 3 cut(s) 280, 818, 1017
Bst4CI ACNGT 2 cut(s) 640, 662
BstACI GRCGYC 1 cut(s) 27
BstDSI CCRYGG 2 cut(s) 818, 1017
BstF5I GGATG 4 cut(s) 211, 292, 598, 1049
BstFNI CGCG 1 cut(s) 168
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 6 cut(s) 234, 252, 350, 685, 804, 856
BstMAI GTCTC 3 cut(s) 324, 881, 927
BstMBI GATC 6 cut(s) 231, 249, 347, 682, 801, 853
BstMWI GCNNNNNNNGC 2 cut(s) 371, 763
BstNSI RCATGY 1 cut(s) 733
BstPAI GACNNNNGTC 1 cut(s) 11
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 361, 1102
BstX2I RGATCY 2 cut(s) 347, 682
BstXI CCANNNNNNTGG 1 cut(s) 287
BstYI RGATCY 2 cut(s) 347, 682
BsuRI GGCC 4 cut(s) 78, 134, 171, 245
BtgI CCRYGG 2 cut(s) 818, 1017
BtsCI GGATG 4 cut(s) 211, 292, 598, 1049
BtsIMutI CAGTG 2 cut(s) 79, 436
CfoI GCGC 1 cut(s) 23
Cfr10I RCCGGY 2 cut(s) 8, 17
Cfr13I GGNCC 5 cut(s) 124, 133, 243, 290, 829
CseI GACGC 1 cut(s) 223
Csp6I GTAC 1 cut(s) 527
CspAI ACCGGT 1 cut(s) 8
CviAII CATG 6 cut(s) 253, 259, 716, 730, 819, 1018
CviQI GTAC 1 cut(s) 527
DpnI GATC 6 cut(s) 233, 251, 349, 684, 803, 855
DpnII GATC 6 cut(s) 231, 249, 347, 682, 801, 853
DraI TTTAAA 1 cut(s) 627
EaeI YGGCCR 2 cut(s) 76, 169
Eco130I CCWWGG 3 cut(s) 280, 818, 1017
Eco24I GRGCYC 1 cut(s) 1112
Eco32I GATATC 2 cut(s) 761, 1024
Eco47I GGWCC 3 cut(s) 124, 290, 829
Eco88I CYCGRG 2 cut(s) 455, 884
EcoO109I RGGNCCY 3 cut(s) 124, 133, 829
EcoRI GAATTC 1 cut(s) 550
EcoRV GATATC 2 cut(s) 761, 1024
EcoT14I CCWWGG 3 cut(s) 280, 818, 1017
EcoT38I GRGCYC 1 cut(s) 1112
ErhI CCWWGG 3 cut(s) 280, 818, 1017
FaeI CATG 6 cut(s) 256, 262, 719, 733, 822, 1021
FalI AAGNNNNNCTT 2 cut(s) 180, 212
FaqI GGGAC 2 cut(s) 842, 901
FatI CATG 6 cut(s) 252, 258, 715, 729, 818, 1017
Fnu4HI GCNGC 3 cut(s) 169, 375, 1116
FokI GGATG 4 cut(s) 218, 299, 605, 1056
FriOI GRGCYC 1 cut(s) 1112
Fsp4HI GCNGC 3 cut(s) 169, 375, 1116
FspBI CTAG 4 cut(s) 327, 477, 669, 738
GlaI GCGC 1 cut(s) 22
GluI GCNGC 3 cut(s) 169, 375, 1116
GsaI CCCAGC 1 cut(s) 610
GsuI CTGGAG 1 cut(s) 435
HaeII RGCGCY 1 cut(s) 24
HaeIII GGCC 4 cut(s) 78, 134, 171, 245
HapII CCGG 3 cut(s) 9, 18, 107
HgaI GACGC 1 cut(s) 223
HhaI GCGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 6 cut(s) 256, 262, 719, 733, 822, 1021
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HincII GTYRAC 1 cut(s) 790
HindII GTYRAC 1 cut(s) 790
HindIII AAGCTT 2 cut(s) 194, 770
HinfI GANTC 7 cut(s) 110, 224, 313, 426, 473, 575, 596
HpaI GTTAAC 1 cut(s) 790
HpaII CCGG 3 cut(s) 9, 18, 107
HphI GGTGA 4 cut(s) 7, 96, 142, 796
Hpy166II GTNNAC 1 cut(s) 790
Hpy188I TCNGA 8 cut(s) 229, 312, 592, 651, 682, 783, 877, 1035
Hpy188III TCNNGA 4 cut(s) 327, 477, 497, 521
Hpy8I GTNNAC 1 cut(s) 790
Hpy99I CGWCG 1 cut(s) 1071
HpyAV CCTTC 6 cut(s) 146, 400, 439, 963, 1037, 1121
HpyCH4III ACNGT 2 cut(s) 640, 662
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 7 cut(s) 209, 277, 488, 559, 904, 1000, 1118
HpyF10VI GCNNNNNNNGC 2 cut(s) 371, 763
HpySE526I ACGT 1 cut(s) 27
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 6 cut(s) 256, 262, 719, 733, 822, 1021
HspAI GCGC 1 cut(s) 21
KspAI GTTAAC 1 cut(s) 790
Kzo9I GATC 6 cut(s) 231, 249, 347, 682, 801, 853
LmnI GCTCC 1 cut(s) 35
Lsp1109I GCAGC 2 cut(s) 361, 1102
LweI GCATC 1 cut(s) 196
MaeI CTAG 4 cut(s) 327, 477, 669, 738
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 2 cut(s) 13, 437
MalI GATC 6 cut(s) 233, 251, 349, 684, 803, 855
MboI GATC 6 cut(s) 231, 249, 347, 682, 801, 853
MboII GAAGA 4 cut(s) 131, 860, 948, 1096
MflI RGATCY 2 cut(s) 347, 682
MhlI GDGCHC 1 cut(s) 1112
MluCI AATT 3 cut(s) 550, 752, 898
MlyI GAGTC 5 cut(s) 104, 233, 322, 420, 590
MmeI TCCRAC 1 cut(s) 375
MseI TTAA 5 cut(s) 300, 626, 635, 665, 789
MslI CAYNNNNRTG 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 3 cut(s) 9, 18, 107
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 371, 763
NcoI CCATGG 2 cut(s) 818, 1017
NdeII GATC 6 cut(s) 231, 249, 347, 682, 801, 853
NlaIII CATG 6 cut(s) 256, 262, 719, 733, 822, 1021
NlaIV GGNNCC 2 cut(s) 244, 830
NmuCI GTSAC 1 cut(s) 13
NspI RCATGY 1 cut(s) 733
PciI ACATGT 1 cut(s) 729
PcsI WCGNNNNNNNCGW 1 cut(s) 579
PfeI GAWTC 2 cut(s) 473, 575
PinAI ACCGGT 1 cut(s) 8
PkrI GCNGC 3 cut(s) 170, 376, 1117
PleI GAGTC 5 cut(s) 104, 232, 321, 420, 590
PpsI GAGTC 5 cut(s) 104, 232, 321, 420, 590
PpuMI RGGWCCY 2 cut(s) 124, 829
PscI ACATGT 1 cut(s) 729
PshAI GACNNNNGTC 1 cut(s) 11
Psp5II RGGWCCY 2 cut(s) 124, 829
PspFI CCCAGC 1 cut(s) 606
PspN4I GGNNCC 2 cut(s) 244, 830
PspPI GGNCC 5 cut(s) 124, 133, 243, 290, 829
PspPPI RGGWCCY 2 cut(s) 124, 829
PsuI RGATCY 2 cut(s) 347, 682
RsaI GTAC 1 cut(s) 528
RsaNI GTAC 1 cut(s) 527
RseI CAYNNNNRTG 1 cut(s) 257
SaqAI TTAA 5 cut(s) 300, 626, 635, 665, 789
SatI GCNGC 3 cut(s) 169, 375, 1116
Sau3AI GATC 6 cut(s) 231, 249, 347, 682, 801, 853
Sau96I GGNCC 5 cut(s) 124, 133, 243, 290, 829
SchI GAGTC 5 cut(s) 104, 233, 322, 420, 590
SduI GDGCHC 1 cut(s) 1112
SfaNI GCATC 1 cut(s) 196
SgrAI CRCCGGYG 1 cut(s) 17
SinI GGWCC 3 cut(s) 124, 290, 829
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 3 cut(s) 550, 752, 898
SsiI CCGC 2 cut(s) 33, 168
SspMI CTAG 4 cut(s) 327, 477, 669, 738
StyI CCWWGG 3 cut(s) 280, 818, 1017
TaaI ACNGT 2 cut(s) 640, 662
TaiI ACGT 1 cut(s) 30
TaqI TCGA 2 cut(s) 113, 573
TasI AATT 3 cut(s) 550, 752, 898
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 2 cut(s) 473, 575
Tru1I TTAA 5 cut(s) 300, 626, 635, 665, 789
Tru9I TTAA 5 cut(s) 300, 626, 635, 665, 789
TscAI CASTG 2 cut(s) 79, 436
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 2 cut(s) 374, 1115
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 5 cut(s) 563, 704, 849, 1074, 1140
TspRI CASTG 2 cut(s) 79, 436
VpaK11BI GGWCC 3 cut(s) 124, 290, 829
XapI RAATTY 1 cut(s) 550
XbaI TCTAGA 2 cut(s) 326, 476
XceI RCATGY 1 cut(s) 733
XspI CTAG 4 cut(s) 327, 477, 669, 738
ZraI GACGTC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.