Rh5AG464000

Leucine-rich repeats, typical (most populated) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0009438
Physical Location & Seq
Forward (+)
79408423 .. 79412011
3589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG464000.1

Sequence Viewer

Length: 813 bp
ATGGAGACCGGTGTCACCGGCGCTGACGTCAGCGGAGCGACCACCACCACCACTACCTCCATAAGCCTGAGCGTCAAGTTCAGTGGCCGAACCATACCCATCACAAATCTCTCACCGGACTCGACCATCAAGGACCTCAAGGCCCTTCTTCAACCTCTCACCAATGTCCTCCCTCGCGGCCAAAAGCTCATATCCAAAGGGAAGCTTTTGGTGGATGCAATGACGCTGAGGGAGTCTGAGATCACTAATGGGGCCAAGATCATGCTCATGGCTTCTCAGGGTTTGCACCAAGGGGATGGACCTATTCTTAAACAAGCTCAGAGTCACCCCATTTCTAGAGACAACAATGCTGATAGATCCGATAAAGGAAAGGCAAAAAAAGCTGCTGTTGATAAGAATAGGTTGGAACGATGGAAGGCTACTGGAGTTATAGGACTCAGTGAGTGTAACTTGAAGGCTATACCCGAGGAAGTCTGGGGGGATTCTAGAACTTCTGCAAGAGTTCTTGACCTCAGCAACAATGTTATTCAAGAAGTACCCGCCCTGATTGGCTGTATGAATTCCTTGCAGAAACTTTTACTCGATTCAAACGATATATCGGATGACTCTGTTAGCTGGGAAGCACTAAAATCTTTAAAGTCTTTAACTGTTCTTTCTCTGAACCAAAACCGTTTAACTAGATTGTCATCGGATCTGGGCTGGTTGCCATCATTAAGGCAACTTCATGTTGCGAACAACATGTTGTCTAGCCTCCCAAGTGAATTGCGATATCTGCCTAAGCTTGAAGTTCTGAAAGTCAACAATAACAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 ubiquitin

Protein Analysis

270

Amino Acids

29.34

Weight (kDa)

9.44

Isoelectric Point (pI)

32.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 24 - 93 5.7e-15 Ubiquitin family
LRR_8 PF13855 145 - 199 5.4e-06 Leucine rich repeat
LRR_14 PF23598 145 - 267 3.7e-07 Leucine-rich repeat region
LRR_8 PF13855 203 - 248 8.1e-07 Leucine rich repeat
LRR_4 PF12799 213 - 252 5.2e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 30
AccII CGCG 1 cut(s) 177
AciI CCGC 3 cut(s) 33, 177, 540
AclWI GGATC 2 cut(s) 351, 699
AcoI YGGCCR 2 cut(s) 85, 178
AcsI RAATTY 1 cut(s) 559
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 1 cut(s) 537
AflIII ACRYGT 1 cut(s) 738
AgeI ACCGGT 1 cut(s) 8
AgsI TTSAA 5 cut(s) 152, 454, 530, 588, 785
AluBI AGCT 6 cut(s) 187, 205, 317, 383, 615, 781
AluI AGCT 6 cut(s) 187, 205, 317, 383, 615, 781
Alw26I GTCTC 1 cut(s) 333
AlwI GGATC 2 cut(s) 351, 699
Ama87I CYCGRG 1 cut(s) 464
AoxI GGCC 4 cut(s) 85, 141, 178, 252
ApeKI GCWGC 1 cut(s) 383
ApoI RAATTY 1 cut(s) 559
AsiGI ACCGGT 1 cut(s) 8
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 4 cut(s) 133, 142, 252, 299
AsuHPI GGTGA 4 cut(s) 7, 105, 151, 317
AvaI CYCGRG 1 cut(s) 464
AvaII GGWCC 2 cut(s) 133, 299
BbvCI CCTCAGC 2 cut(s) 227, 512
BbvI GCAGC 1 cut(s) 370
BccI CCATC 5 cut(s) 107, 134, 290, 405, 715
BcoDI GTCTC 1 cut(s) 333
BfaI CTAG 4 cut(s) 336, 486, 678, 747
BfoI RGCGCY 1 cut(s) 24
BisI GCNGC 2 cut(s) 178, 384
BlsI GCNGC 2 cut(s) 179, 385
Bme18I GGWCC 2 cut(s) 133, 299
BmeT110I CYCGRG 1 cut(s) 464
BmgT120I GGNCC 4 cut(s) 133, 142, 252, 299
BmiI GGNNCC 1 cut(s) 253
BmsI GCATC 1 cut(s) 205
BoxI GACNNNNGTC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 444
Bpu10I CCTNAGC 4 cut(s) 68, 227, 512, 777
BpuEI CTTGAG 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 685
BsaHI GRCGYC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 289, 465
BsaWI WCCGGW 2 cut(s) 8, 115
Bse118I RCCGGY 2 cut(s) 8, 17
Bse1I ACTGG 1 cut(s) 427
Bse3DI GCAATG 1 cut(s) 225
Bse8I GATNNNNATC 1 cut(s) 685
BseDI CCNNGG 2 cut(s) 289, 465
BseGI GGATG 3 cut(s) 220, 301, 607
BseJI GATNNNNATC 1 cut(s) 685
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 7 cut(s) 59, 218, 228, 290, 332, 451, 526
BseNI ACTGG 1 cut(s) 427
BseXI GCAGC 1 cut(s) 370
BseYI CCCAGC 1 cut(s) 615
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 4 cut(s) 87, 143, 180, 254
BshTI ACCGGT 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 3 cut(s) 9, 18, 116
BsmAI GTCTC 1 cut(s) 333
BsnI GGCC 4 cut(s) 87, 143, 180, 254
BsoBI CYCGRG 1 cut(s) 464
Bsp143I GATC 4 cut(s) 240, 258, 356, 691
BspACI CCGC 3 cut(s) 33, 177, 540
BspANI GGCC 4 cut(s) 87, 143, 180, 254
BspCNI CTCAG 7 cut(s) 60, 219, 229, 289, 331, 450, 525
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 253
BspPI GGATC 2 cut(s) 351, 699
BsrDI GCAATG 1 cut(s) 225
BsrFI RCCGGY 2 cut(s) 8, 17
BsrI ACTGG 1 cut(s) 427
BssAI RCCGGY 2 cut(s) 8, 17
BssECI CCNNGG 2 cut(s) 289, 465
BssMI GATC 4 cut(s) 240, 258, 356, 691
BssNI GRCGYC 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 289
Bst4CI ACNGT 2 cut(s) 649, 671
BstACI GRCGYC 1 cut(s) 27
BstDEI CTNAG 8 cut(s) 68, 227, 237, 276, 318, 437, 512, 777
BstF5I GGATG 3 cut(s) 220, 301, 607
BstFNI CGCG 1 cut(s) 177
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 4 cut(s) 243, 261, 359, 694
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 4 cut(s) 240, 258, 356, 691
BstMWI GCNNNNNNNGC 2 cut(s) 380, 772
BstNSI RCATGY 1 cut(s) 742
BstPAI GACNNNNGTC 1 cut(s) 11
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 370
BstX2I RGATCY 2 cut(s) 356, 691
BstXI CCANNNNNNTGG 1 cut(s) 296
BstYI RGATCY 2 cut(s) 356, 691
BsuRI GGCC 4 cut(s) 87, 143, 180, 254
BtsCI GGATG 3 cut(s) 220, 301, 607
BtsIMutI CAGTG 2 cut(s) 88, 445
CfoI GCGC 1 cut(s) 23
Cfr10I RCCGGY 2 cut(s) 8, 17
Cfr13I GGNCC 4 cut(s) 133, 142, 252, 299
CseI GACGC 2 cut(s) 61, 232
Csp6I GTAC 1 cut(s) 536
CspAI ACCGGT 1 cut(s) 8
CspCI CAANNNNNGTGG 2 cut(s) 64, 99
CviAII CATG 4 cut(s) 262, 268, 725, 739
CviQI GTAC 1 cut(s) 536
DdeI CTNAG 8 cut(s) 68, 227, 237, 276, 318, 437, 512, 777
DpnI GATC 4 cut(s) 242, 260, 358, 693
DpnII GATC 4 cut(s) 240, 258, 356, 691
DraI TTTAAA 1 cut(s) 636
EaeI YGGCCR 2 cut(s) 85, 178
Eco130I CCWWGG 1 cut(s) 289
Eco32I GATATC 1 cut(s) 770
Eco47I GGWCC 2 cut(s) 133, 299
Eco88I CYCGRG 1 cut(s) 464
EcoO109I RGGNCCY 2 cut(s) 133, 142
EcoRI GAATTC 1 cut(s) 559
EcoRV GATATC 1 cut(s) 770
EcoT14I CCWWGG 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 4 cut(s) 265, 271, 728, 742
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FatI CATG 4 cut(s) 261, 267, 724, 738
FauI CCCGC 1 cut(s) 547
Fnu4HI GCNGC 2 cut(s) 178, 384
FokI GGATG 3 cut(s) 227, 308, 614
Fsp4HI GCNGC 2 cut(s) 178, 384
FspBI CTAG 4 cut(s) 336, 486, 678, 747
GlaI GCGC 1 cut(s) 22
GluI GCNGC 2 cut(s) 178, 384
GsaI CCCAGC 1 cut(s) 619
GsuI CTGGAG 1 cut(s) 444
HaeII RGCGCY 1 cut(s) 24
HaeIII GGCC 4 cut(s) 87, 143, 180, 254
HapII CCGG 3 cut(s) 9, 18, 116
HgaI GACGC 2 cut(s) 61, 232
HhaI GCGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 4 cut(s) 265, 271, 728, 742
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HindIII AAGCTT 2 cut(s) 203, 779
HinfI GANTC 7 cut(s) 119, 233, 322, 435, 482, 584, 605
HpaII CCGG 3 cut(s) 9, 18, 116
HphI GGTGA 4 cut(s) 7, 105, 151, 317
Hpy166II GTNNAC 1 cut(s) 799
Hpy188I TCNGA 7 cut(s) 238, 321, 361, 601, 660, 691, 792
Hpy188III TCNNGA 4 cut(s) 336, 486, 506, 530
Hpy8I GTNNAC 1 cut(s) 799
HpyAV CCTTC 3 cut(s) 155, 409, 448
HpyCH4III ACNGT 2 cut(s) 649, 671
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 4 cut(s) 218, 286, 497, 568
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 772
HpyF3I CTNAG 8 cut(s) 68, 227, 237, 276, 318, 437, 512, 777
HpySE526I ACGT 1 cut(s) 27
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 4 cut(s) 265, 271, 728, 742
HspAI GCGC 1 cut(s) 21
Kzo9I GATC 4 cut(s) 240, 258, 356, 691
LmnI GCTCC 1 cut(s) 35
Lsp1109I GCAGC 1 cut(s) 370
LweI GCATC 1 cut(s) 205
MaeI CTAG 4 cut(s) 336, 486, 678, 747
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 3 cut(s) 13, 323, 446
MalI GATC 4 cut(s) 242, 260, 358, 693
MboI GATC 4 cut(s) 240, 258, 356, 691
MboII GAAGA 1 cut(s) 140
MflI RGATCY 2 cut(s) 356, 691
MluCI AATT 2 cut(s) 559, 761
MlyI GAGTC 5 cut(s) 113, 242, 331, 429, 599
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 9 cut(s) 67, 146, 165, 179, 183, 222, 460, 521, 761
MseI TTAA 5 cut(s) 309, 635, 644, 674, 713
MslI CAYNNNNRTG 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 3 cut(s) 9, 18, 116
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 380, 772
NdeII GATC 4 cut(s) 240, 258, 356, 691
NlaIII CATG 4 cut(s) 265, 271, 728, 742
NlaIV GGNNCC 1 cut(s) 253
NmuCI GTSAC 2 cut(s) 13, 323
NspI RCATGY 1 cut(s) 742
PciI ACATGT 1 cut(s) 738
PcsI WCGNNNNNNNCGW 1 cut(s) 588
PfeI GAWTC 2 cut(s) 482, 584
PinAI ACCGGT 1 cut(s) 8
PkrI GCNGC 2 cut(s) 179, 385
PleI GAGTC 5 cut(s) 113, 241, 330, 429, 599
PpsI GAGTC 5 cut(s) 113, 241, 330, 429, 599
PpuMI RGGWCCY 1 cut(s) 133
PscI ACATGT 1 cut(s) 738
PshAI GACNNNNGTC 1 cut(s) 11
Psp5II RGGWCCY 1 cut(s) 133
PspFI CCCAGC 1 cut(s) 615
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 4 cut(s) 133, 142, 252, 299
PspPPI RGGWCCY 1 cut(s) 133
PsuI RGATCY 2 cut(s) 356, 691
RsaI GTAC 1 cut(s) 537
RsaNI GTAC 1 cut(s) 536
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 5 cut(s) 309, 635, 644, 674, 713
SatI GCNGC 2 cut(s) 178, 384
Sau3AI GATC 4 cut(s) 240, 258, 356, 691
Sau96I GGNCC 4 cut(s) 133, 142, 252, 299
SchI GAGTC 5 cut(s) 113, 242, 331, 429, 599
SfaNI GCATC 1 cut(s) 205
SgrAI CRCCGGYG 1 cut(s) 17
SinI GGWCC 2 cut(s) 133, 299
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 2 cut(s) 559, 761
SsiI CCGC 3 cut(s) 33, 177, 540
SspMI CTAG 4 cut(s) 336, 486, 678, 747
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 2 cut(s) 649, 671
TaiI ACGT 1 cut(s) 30
TaqI TCGA 2 cut(s) 122, 582
TasI AATT 2 cut(s) 559, 761
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 2 cut(s) 482, 584
Tru1I TTAA 5 cut(s) 309, 635, 644, 674, 713
Tru9I TTAA 5 cut(s) 309, 635, 644, 674, 713
TscAI CASTG 2 cut(s) 88, 445
TseFI GTSAC 2 cut(s) 13, 323
TseI GCWGC 1 cut(s) 383
Tsp45I GTSAC 2 cut(s) 13, 323
TspDTI ATGAA 2 cut(s) 572, 713
TspRI CASTG 2 cut(s) 88, 445
VpaK11BI GGWCC 2 cut(s) 133, 299
XapI RAATTY 1 cut(s) 559
XbaI TCTAGA 2 cut(s) 335, 485
XceI RCATGY 1 cut(s) 742
XspI CTAG 4 cut(s) 336, 486, 678, 747
ZraI GACGTC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.