Rh5DG494700

Leucine-rich repeats, typical (most populated) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0009438
Physical Location & Seq
Forward (+)
77596316 .. 77599936
3621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG494700.1

Sequence Viewer

Length: 1155 bp
ATGGAGACCGGTGTCACCGGCGCTGACGTCAGCGGAGCGACCACCACCACCACCACCACCATAAGCCTGAGCGTCAAGTTCAGTGGCCGAACCATACCCATCACAAATCTCTCACCGGACTCGACCATCAAGGACCTCAAGGCCCTTCTTCAACCTCTCACCAATGTCCTCCCTCGCGGCCAAAAGCTCATATCCAAAGGGAAGCTTTTGGTGGATGCAATGACGCTGAGGGAGTCTGAGATCACTAATGGGGCCAAGATCATGCTCATGGCTTCTCAGGGTTTGCACCAAGGGGCTGGACCTATTCTTAAACAAGCTCAGAGTCGCCCCATTTCTAGAGACAACAATGCTGATAGATCCGATAAAGGAAAGGCGAAAAAAGCTGCTGTTGATAAGAATAGGTTGGAACGATGGAAGGCTACTGGAGTTATAGGACTCAGTGAGTGTAACTTGAAGGCTATACCTGAGGAAGTCTGGGGGGATTCTAGAACTTCTGCAAGAGTTCTTGACCTCAGCAACAATGTTATTCAAGAAGTACCCGCCTTGATTGGCTGTATGAATTCCTTGCAGAAACTGTTACTTGATTCAAATGATCTATCGGATGACTCTGTTAGCTGGGAAGCACTAAAATCTTTGAAGTCTTTAACTGTTCTTTCTCTGAACCAAAACCGTTTAACTAGATTGTCATCGGATCTGGGCTGGTTGCCATCACTAAGGCAACTTCATGTTGCGAACAACATGTTGTCTAGCCTCCCAAGTGAATTACGATATCTGCCTAAGCTTGAAGTTCTGAAAGTCAACAATAATAGGATCAGCACCATTCCTACATGGATAGGGGACCTTATTACTCTTATTGAGGTTGATCTTTCATCGAATCTTCTGTCAGATTTGCCGGAGACATTTAGCAATTTGCATAATCTAAAGTCTCTGTCTCTCAGTAATAATGGGCTGAAATCTCTTCCTTCTTCGCTATTCAAAATGTGCCTAATGCTCACAAGACTTGATTTGCACAACACAGAAATAACCATGGATATCCTTCGTCAGATTGAGGGATGGGAAAACTTCGATGAACGCCGTCGCTTGAAGCAACAGAAGAAACTGGATTTTCGCGTTGTGGGCTCTGCTGCATTTGATGAAGGTGCTGATAAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 ubiquitin

Protein Analysis

384

Amino Acids

42.26

Weight (kDa)

9.12

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 24 - 93 1e-14 Ubiquitin family
LRR_8 PF13855 145 - 199 8.2e-06 Leucine rich repeat
LRR_14 PF23598 145 - 244 7.5e-06 Leucine-rich repeat region
LRR_9 PF14580 194 - 273 2.8e-06 Leucine-rich repeat
LRR_14 PF23598 202 - 286 1.4e-07 Leucine-rich repeat region
LRR_8 PF13855 203 - 248 1.2e-06 Leucine rich repeat
LRR_4 PF12799 213 - 253 2.4e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 236 - 294 1.4e-06 Leucine rich repeat
LRR_4 PF12799 236 - 276 2.6e-07 Leucine Rich repeats (2 copies)
LRR_8 PF13855 259 - 317 3.9e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 30
AccII CGCG 2 cut(s) 177, 1110
AciI CCGC 3 cut(s) 33, 177, 540
AclWI GGATC 3 cut(s) 351, 699, 818
AcoI YGGCCR 2 cut(s) 85, 178
AcsI RAATTY 1 cut(s) 559
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 1 cut(s) 537
AflIII ACRYGT 1 cut(s) 738
AgeI ACCGGT 1 cut(s) 8
AgsI TTSAA 8 cut(s) 152, 454, 530, 588, 637, 785, 976, 1084
AluBI AGCT 7 cut(s) 187, 205, 317, 383, 615, 781, 1152
AluI AGCT 7 cut(s) 187, 205, 317, 383, 615, 781, 1152
Alw26I GTCTC 4 cut(s) 333, 890, 930, 936
AlwI GGATC 3 cut(s) 351, 699, 818
AlwNI CAGNNNCTG 1 cut(s) 574
AoxI GGCC 4 cut(s) 85, 141, 178, 252
ApeKI GCWGC 2 cut(s) 383, 1124
ApoI RAATTY 1 cut(s) 559
ArsI GACNNNNNNTTYG 2 cut(s) 866, 898
AsiGI ACCGGT 1 cut(s) 8
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 5 cut(s) 133, 142, 252, 299, 838
AsuHPI GGTGA 3 cut(s) 7, 105, 151
AvaII GGWCC 3 cut(s) 133, 299, 838
AxyI CCTNAGG 1 cut(s) 465
BanII GRGCYC 1 cut(s) 1121
BbvCI CCTCAGC 2 cut(s) 227, 512
BbvI GCAGC 2 cut(s) 370, 1111
BccI CCATC 5 cut(s) 107, 134, 405, 715, 1047
BceAI ACGGC 1 cut(s) 1059
BcoDI GTCTC 4 cut(s) 333, 890, 930, 936
BfaI CTAG 4 cut(s) 336, 486, 678, 747
BfoI RGCGCY 1 cut(s) 24
BisI GCNGC 3 cut(s) 178, 384, 1125
BlsI GCNGC 3 cut(s) 179, 385, 1126
Bme18I GGWCC 3 cut(s) 133, 299, 838
BmgT120I GGNCC 5 cut(s) 133, 142, 252, 299, 838
BmiI GGNNCC 2 cut(s) 253, 839
BmsI GCATC 1 cut(s) 205
BoxI GACNNNNGTC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 444
Bpu10I CCTNAGC 4 cut(s) 68, 227, 512, 777
BpuEI CTTGAG 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 685
BsaHI GRCGYC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 289, 1026
BsaWI WCCGGW 2 cut(s) 8, 115
Bse118I RCCGGY 2 cut(s) 8, 17
Bse1I ACTGG 2 cut(s) 427, 1104
Bse21I CCTNAGG 1 cut(s) 465
Bse3DI GCAATG 1 cut(s) 225
Bse8I GATNNNNATC 1 cut(s) 685
BseDI CCNNGG 2 cut(s) 289, 1026
BseGI GGATG 3 cut(s) 220, 607, 1058
BseJI GATNNNNATC 1 cut(s) 685
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 9 cut(s) 59, 218, 228, 290, 332, 451, 456, 526, 949
BseNI ACTGG 2 cut(s) 427, 1104
BseXI GCAGC 2 cut(s) 370, 1111
BseYI CCCAGC 1 cut(s) 615
Bsh1236I CGCG 2 cut(s) 177, 1110
BshFI GGCC 4 cut(s) 87, 143, 180, 254
BshTI ACCGGT 1 cut(s) 8
BsiSI CCGG 4 cut(s) 9, 18, 116, 893
BslFI GGGAC 1 cut(s) 851
BsmAI GTCTC 4 cut(s) 333, 890, 930, 936
BsmFI GGGAC 1 cut(s) 851
BsnI GGCC 4 cut(s) 87, 143, 180, 254
Bsp1286I GDGCHC 1 cut(s) 1121
Bsp143I GATC 7 cut(s) 240, 258, 356, 592, 691, 810, 862
Bsp19I CCATGG 1 cut(s) 1026
BspACI CCGC 3 cut(s) 33, 177, 540
BspANI GGCC 4 cut(s) 87, 143, 180, 254
BspCNI CTCAG 9 cut(s) 60, 219, 229, 289, 331, 450, 457, 525, 948
BspFNI CGCG 2 cut(s) 177, 1110
BspLI GGNNCC 2 cut(s) 253, 839
BspPI GGATC 3 cut(s) 351, 699, 818
BsrDI GCAATG 1 cut(s) 225
BsrFI RCCGGY 2 cut(s) 8, 17
BsrI ACTGG 2 cut(s) 427, 1104
BssAI RCCGGY 2 cut(s) 8, 17
BssECI CCNNGG 2 cut(s) 289, 1026
BssMI GATC 7 cut(s) 240, 258, 356, 592, 691, 810, 862
BssNI GRCGYC 1 cut(s) 27
BssT1I CCWWGG 2 cut(s) 289, 1026
Bst4CI ACNGT 3 cut(s) 576, 649, 671
Bst6I CTCTTC 1 cut(s) 963
BstACI GRCGYC 1 cut(s) 27
BstDSI CCRYGG 1 cut(s) 1026
BstF5I GGATG 3 cut(s) 220, 607, 1058
BstFNI CGCG 2 cut(s) 177, 1110
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 7 cut(s) 243, 261, 359, 595, 694, 813, 865
BstMAI GTCTC 4 cut(s) 333, 890, 930, 936
BstMBI GATC 7 cut(s) 240, 258, 356, 592, 691, 810, 862
BstMWI GCNNNNNNNGC 2 cut(s) 380, 1116
BstNSI RCATGY 1 cut(s) 742
BstPAI GACNNNNGTC 1 cut(s) 11
BstUI CGCG 2 cut(s) 177, 1110
BstV1I GCAGC 2 cut(s) 370, 1111
BstX2I RGATCY 2 cut(s) 356, 691
BstXI CCANNNNNNTGG 1 cut(s) 296
BstYI RGATCY 2 cut(s) 356, 691
Bsu36I CCTNAGG 1 cut(s) 465
BsuRI GGCC 4 cut(s) 87, 143, 180, 254
BtgI CCRYGG 1 cut(s) 1026
BtsCI GGATG 3 cut(s) 220, 607, 1058
BtsIMutI CAGTG 2 cut(s) 88, 445
CaiI CAGNNNCTG 1 cut(s) 574
CfoI GCGC 1 cut(s) 23
Cfr10I RCCGGY 2 cut(s) 8, 17
Cfr13I GGNCC 5 cut(s) 133, 142, 252, 299, 838
CseI GACGC 2 cut(s) 61, 232
Csp6I GTAC 1 cut(s) 536
CspAI ACCGGT 1 cut(s) 8
CspCI CAANNNNNGTGG 2 cut(s) 64, 99
CviAII CATG 6 cut(s) 262, 268, 725, 739, 828, 1027
CviQI GTAC 1 cut(s) 536
DpnI GATC 7 cut(s) 242, 260, 358, 594, 693, 812, 864
DpnII GATC 7 cut(s) 240, 258, 356, 592, 691, 810, 862
EaeI YGGCCR 2 cut(s) 85, 178
Eam1104I CTCTTC 1 cut(s) 963
EarI CTCTTC 1 cut(s) 963
Eco130I CCWWGG 2 cut(s) 289, 1026
Eco24I GRGCYC 1 cut(s) 1121
Eco32I GATATC 2 cut(s) 770, 1033
Eco47I GGWCC 3 cut(s) 133, 299, 838
Eco81I CCTNAGG 1 cut(s) 465
EcoO109I RGGNCCY 3 cut(s) 133, 142, 838
EcoRI GAATTC 1 cut(s) 559
EcoRV GATATC 2 cut(s) 770, 1033
EcoT14I CCWWGG 2 cut(s) 289, 1026
EcoT38I GRGCYC 1 cut(s) 1121
ErhI CCWWGG 2 cut(s) 289, 1026
FaeI CATG 6 cut(s) 265, 271, 728, 742, 831, 1030
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FaqI GGGAC 1 cut(s) 851
FatI CATG 6 cut(s) 261, 267, 724, 738, 827, 1026
FauI CCCGC 1 cut(s) 547
Fnu4HI GCNGC 3 cut(s) 178, 384, 1125
FokI GGATG 3 cut(s) 227, 614, 1065
FriOI GRGCYC 1 cut(s) 1121
Fsp4HI GCNGC 3 cut(s) 178, 384, 1125
FspBI CTAG 4 cut(s) 336, 486, 678, 747
GlaI GCGC 1 cut(s) 22
GluI GCNGC 3 cut(s) 178, 384, 1125
GsaI CCCAGC 1 cut(s) 619
GsuI CTGGAG 1 cut(s) 444
HaeII RGCGCY 1 cut(s) 24
HaeIII GGCC 4 cut(s) 87, 143, 180, 254
HapII CCGG 4 cut(s) 9, 18, 116, 893
HgaI GACGC 2 cut(s) 61, 232
HhaI GCGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 6 cut(s) 265, 271, 728, 742, 831, 1030
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HindIII AAGCTT 2 cut(s) 203, 779
HinfI GANTC 8 cut(s) 119, 233, 322, 435, 482, 584, 605, 874
HpaII CCGG 4 cut(s) 9, 18, 116, 893
HphI GGTGA 3 cut(s) 7, 105, 151
Hpy166II GTNNAC 1 cut(s) 799
Hpy188I TCNGA 9 cut(s) 238, 321, 361, 601, 660, 691, 792, 886, 1044
Hpy188III TCNNGA 4 cut(s) 336, 486, 506, 530
Hpy8I GTNNAC 1 cut(s) 799
Hpy99I CGWCG 1 cut(s) 1080
HpyAV CCTTC 6 cut(s) 155, 409, 448, 972, 1046, 1130
HpyCH4III ACNGT 3 cut(s) 576, 649, 671
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 7 cut(s) 218, 286, 497, 568, 913, 1009, 1127
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 1116
HpySE526I ACGT 1 cut(s) 27
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 6 cut(s) 265, 271, 728, 742, 831, 1030
HspAI GCGC 1 cut(s) 21
Kzo9I GATC 7 cut(s) 240, 258, 356, 592, 691, 810, 862
LmnI GCTCC 1 cut(s) 35
Lsp1109I GCAGC 2 cut(s) 370, 1111
LweI GCATC 1 cut(s) 205
MaeI CTAG 4 cut(s) 336, 486, 678, 747
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 3 cut(s) 13, 446, 576
MalI GATC 7 cut(s) 242, 260, 358, 594, 693, 812, 864
MboI GATC 7 cut(s) 240, 258, 356, 592, 691, 810, 862
MboII GAAGA 5 cut(s) 140, 869, 950, 957, 1105
MflI RGATCY 2 cut(s) 356, 691
MhlI GDGCHC 1 cut(s) 1121
MluCI AATT 3 cut(s) 559, 761, 907
MlyI GAGTC 5 cut(s) 113, 242, 331, 429, 599
MmeI TCCRAC 1 cut(s) 384
MseI TTAA 3 cut(s) 309, 644, 674
MslI CAYNNNNRTG 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 4 cut(s) 9, 18, 116, 893
MvnI CGCG 2 cut(s) 177, 1110
MwoI GCNNNNNNNGC 2 cut(s) 380, 1116
NcoI CCATGG 1 cut(s) 1026
NdeII GATC 7 cut(s) 240, 258, 356, 592, 691, 810, 862
NlaIII CATG 6 cut(s) 265, 271, 728, 742, 831, 1030
NlaIV GGNNCC 2 cut(s) 253, 839
NmuCI GTSAC 1 cut(s) 13
NspI RCATGY 1 cut(s) 742
PciI ACATGT 1 cut(s) 738
PfeI GAWTC 3 cut(s) 482, 584, 874
PinAI ACCGGT 1 cut(s) 8
PkrI GCNGC 3 cut(s) 179, 385, 1126
PleI GAGTC 5 cut(s) 113, 241, 330, 429, 599
PpsI GAGTC 5 cut(s) 113, 241, 330, 429, 599
PpuMI RGGWCCY 2 cut(s) 133, 838
PscI ACATGT 1 cut(s) 738
PshAI GACNNNNGTC 1 cut(s) 11
Psp5II RGGWCCY 2 cut(s) 133, 838
PspFI CCCAGC 1 cut(s) 615
PspN4I GGNNCC 2 cut(s) 253, 839
PspPI GGNCC 5 cut(s) 133, 142, 252, 299, 838
PspPPI RGGWCCY 2 cut(s) 133, 838
PstNI CAGNNNCTG 1 cut(s) 574
PsuI RGATCY 2 cut(s) 356, 691
RsaI GTAC 1 cut(s) 537
RsaNI GTAC 1 cut(s) 536
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 3 cut(s) 309, 644, 674
SatI GCNGC 3 cut(s) 178, 384, 1125
Sau3AI GATC 7 cut(s) 240, 258, 356, 592, 691, 810, 862
Sau96I GGNCC 5 cut(s) 133, 142, 252, 299, 838
SchI GAGTC 5 cut(s) 113, 242, 331, 429, 599
SduI GDGCHC 1 cut(s) 1121
SfaNI GCATC 1 cut(s) 205
SgrAI CRCCGGYG 1 cut(s) 17
SinI GGWCC 3 cut(s) 133, 299, 838
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 3 cut(s) 559, 761, 907
SsiI CCGC 3 cut(s) 33, 177, 540
SspMI CTAG 4 cut(s) 336, 486, 678, 747
StyI CCWWGG 2 cut(s) 289, 1026
TaaI ACNGT 3 cut(s) 576, 649, 671
TaiI ACGT 1 cut(s) 30
TaqI TCGA 3 cut(s) 122, 872, 1065
TasI AATT 3 cut(s) 559, 761, 907
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 3 cut(s) 482, 584, 874
Tru1I TTAA 3 cut(s) 309, 644, 674
Tru9I TTAA 3 cut(s) 309, 644, 674
TscAI CASTG 2 cut(s) 88, 445
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 2 cut(s) 383, 1124
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 5 cut(s) 572, 713, 858, 1083, 1149
TspRI CASTG 2 cut(s) 88, 445
VpaK11BI GGWCC 3 cut(s) 133, 299, 838
XapI RAATTY 1 cut(s) 559
XbaI TCTAGA 2 cut(s) 335, 485
XceI RCATGY 1 cut(s) 742
XspI CTAG 4 cut(s) 336, 486, 678, 747
ZraI GACGTC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.